Lag0038211 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038211
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Girdin-like
Location	chr2: 13840057 .. 13840629 (-)
RNA-Seq Expression	Lag0038211
Synteny	Lag0038211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTGTATCCCAGAGTAAAAGGGTATGTGGATGACGATGTCTTGAAGCTCTTCTTCTGCATTGAGCAAGGGGTGAATCCAACCATACCTCTTCTGATAGAAACAATTCGGACGCTCAATTATTGTAAGTCCAATAAAGGCGGGAAACTGAGATGTTGTGTCCTTTTACTGTATATTTGGGTGCATAGCCATTTTAAGTTCCCAGAAGATTTTGGCTGCCCAAAAATTAATTTTAGCAGCACTTGGAATCTAACATGGAGTACAATTGTAGAATTTGGCATAGCCCAATGGAATTCAAGTTTTCTGAAAAAAGAAGCATGAGTGTCATTCTTTTCATATGTCAAATTAGAGCATGTAATTTGGAAGGCACATTAGATGCTCTTAAAGGCCTTAATCTACAAATGCGGGGGCTTCCACACAGTTCCTCTGGTAGGTCCTTGGGGGTGTGTCCATTATGCTCTGTTGTTGGCCTTACGACAAAGATGGTTTAAGCAATTCATACTAGCAACTCATGGTCTGAATAAACTAGAATTTTCCTACAACTGCGAGGATTCTAATGAATGGAAGTGA

mRNA sequence

ATGGTCCTGTATCCCAGAGTAAAAGGGTATGTGGATGACGATGTCTTGAAGCTCTTCTTCTGCATTGAGCAAGGGGTGAATCCAACCATACCTCTTCTGATAGAAACAATTCGGACGCTCAATTATTTTCCTCTGGTAGGTCCTTGGGGGTGTGTCCATTATGCTCTGTTGTTGGCCTTACGACAAAGATGGTTTAAGCAATTCATACTAGCAACTCATGGTCTGAATAAACTAGAATTTTCCTACAACTGCGAGGATTCTAATGAATGGAAGTGA

Coding sequence (CDS)

ATGGTCCTGTATCCCAGAGTAAAAGGGTATGTGGATGACGATGTCTTGAAGCTCTTCTTCTGCATTGAGCAAGGGGTGAATCCAACCATACCTCTTCTGATAGAAACAATTCGGACGCTCAATTATTTTCCTCTGGTAGGTCCTTGGGGGTGTGTCCATTATGCTCTGTTGTTGGCCTTACGACAAAGATGGTTTAAGCAATTCATACTAGCAACTCATGGTCTGAATAAACTAGAATTTTCCTACAACTGCGAGGATTCTAATGAATGGAAGTGA

Protein sequence

MVLYPRVKGYVDDDVLKLFFCIEQGVNPTIPLLIETIRTLNYFPLVGPWGCVHYALLLALRQRWFKQFILATHGLNKLEFSYNCEDSNEWK

Homology

[Close]

BLAST of Lag0038211 vs. NCBI nr
Match: MBA0819544.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1   MVLYPRVKGYVDDDVLKLFFCIEQGVNPTIPLLIETIRTLNYF----PLVGPWGCVHYAL 60
           +V+ P+V G++DD VL+LF   ++ V P +  L+ET R+L+ +    PL+G WG + Y L
Sbjct: 90  LVILPKVLGHIDDAVLELFDRFDKRVTPVLTFLVETFRSLSAYRRAVPLLGIWGAIGYVL 149

Query: 61  LLALRQRWFKQFILATHGLNKLEFSY 83
           LL LRQ   + FI AT  L + EF+Y
Sbjct: 150 LLVLRQYRSRNFIPATPRLAQFEFAY 175

[Close]

BLAST of Lag0038211 vs. NCBI nr
Match: TYK07552.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 51/184 (27.72%), Postives = 66/184 (35.87%), Query Frame = 0


Query: 2   VLYPRVKGYVDDDVLKLFFCIEQGVNPTIPLLIETIRTLNYF------------------ 61
           V++P+ +GYVD  V+KLFF +E+GVNP IP+L +T R+LNY+                  
Sbjct: 194 VIFPKAEGYVDGKVIKLFFEMERGVNPIIPILAKTFRSLNYYRNKGEGKFNCCVPLLYIW 253

Query: 62  ------------------------------------------------------------ 87
                                                                       
Sbjct: 254 IHSHIKFPAEFRCPRLDFSSPWNLMRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVI 313

[Close]

BLAST of Lag0038211 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 42/123 (34.15%), Postives = 60/123 (48.78%), Query Frame = 0


Query: 2   VLYPRVKGYVDDDVLKLFFCIEQGVNPTIPLLIETIRTLN-------------------- 61
           +++PR+KGYV+++V+K+F  IE+GVNP IP++ ET R+LN                    
Sbjct: 93  IIFPRIKGYVEEEVVKIFVGIERGVNPVIPIMTETFRSLNHCRIQVFQPFNDNRCNLESP 152

Query: 62  ---------------YFPLVG-PWGCVHYALLLALRQRWFKQFILATHGLNKLEFSYNCE 89
                          Y+P +    G + Y+ LL LRQ W KQF     GL   EFSY   
Sbjct: 153 LDAHKSFDTPLWKIGYYPTIRLMGGGIAYSPLLVLRQSWSKQFAPVVCGLEDWEFSYESN 212

[Close]

BLAST of Lag0038211 vs. NCBI nr
Match: MBA0560740.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MVLYPRVKGYVDDDVLKLFFCIEQGVNPTIPLLIETIRTLNYFPLVGPWGCVHYALLLAL 60
          MV++P+   ++DD V  LF  +++ V P + +++ET R+L+  PL+G WG + YA  L L
Sbjct: 1  MVIFPKALRHIDDTVSDLFNLLDKRVTPVLTIVVETFRSLS-VPLLGIWGAIGYAPQLVL 60

Query: 61 RQRWFKQFILATHGLNKLEFSY 83
          RQ   +QFILAT G  + +F+Y
Sbjct: 61 RQYRLRQFILATQGFAQCKFAY 81

[Close]

BLAST of Lag0038211 vs. NCBI nr
Match: MBA0671114.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-09
Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 1   MVLYPRVKGYVDDDVLKLFFCIEQGVNPTIPLLIETIRTLN------------------- 60
           +V++PR  G+VD+ V  LF  + +GV P   +L ET R+LN                   
Sbjct: 141 LVIFPRALGHVDEAVSGLFDRLSKGVMPVPTILAETFRSLNACRAPWLVPDEILYRCGSF 200

Query: 61  -YFPLVGPWGCVHYALLLALRQRWFKQFILATHGLNKLEFSY 83
            + PL+G WG V YA LL LRQ   +QF+LAT GL   EFSY
Sbjct: 201 DWVPLLGIWGAVGYAPLLVLRQYNSRQFVLATQGLAHCEFSY 242

The following BLAST results are available for this feature:

BLAST of Lag0038211 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0819544.1	1.3e-09	43.02	hypothetical protein [Gossypium harknessii]	[more]
TYK07552.1	1.7e-09	27.72	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0032013.1	1.7e-09	34.15	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
MBA0560740.1	2.3e-09	41.46	hypothetical protein [Gossypium lobatum]	[more]
MBA0671114.1	3.0e-09	41.18	hypothetical protein [Gossypium klotzschianum]	[more]

BLAST of Lag0038211 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038211.1	Lag0038211.1	mRNA