Lag0038210 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038210
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Girdin-like
Location	chr2: 13837789 .. 13838346 (+)
RNA-Seq Expression	Lag0038210
Synteny	Lag0038210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATACTGCACTTAGAAGAGCAACTCGTTTATAAGAAGGCAGGATCAATGACCTTTCATCAAGAGGCAAAGAGACTCTTAAAGTTAGTTGTGGAATTAAATGAGACCATCAACAAGCAAAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCCCTATGTCGAACGTTGGACAATCTTCGTGTGAATATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTAAAGTTACATAAGCTCATTAGAAAACGTCAGTTCCAAGCATTTCAAAGAGCAAGCGAACAATTGTGGCTAGAGACAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGATTATGCCATTTTGAGAGACGACATGCAAATAGTTATTGGGAAGGTAAACCGAACCATGAACACTATCAAGATCATGGCTAGAAGAGCCCGAGGATTTGCAGAACGGGCAAGGGATCTGCAAGAGAGTACTTCACCTATGGCTTCTTATGCAGATGAGTTGTTTGAGTTTTTAGGAATGATTCGTAGGGACCTTGGATACTTTGGTCATTTTCACTAA

mRNA sequence

ATGAGAATACTGCACTTAGAAGAGCAACTCGTTTATAAGAAGGCAGGATCAATGACCTTTCATCAAGAGGCAAAGAGACTCTTAAAGTTAGTTGTGGAATTAAATGAGACCATCAACAAGCAAAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCCCTATGTCGAACGTTGGACAATCTTCGTGTGAATATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTAAAGTTACATAAGCTCATTAGAAAACGTCAGTTCCAAGCATTTCAAAGAGCAAGCGAACAATTGTGGCTAGAGACAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGATTATGCCATTTTGAGAGACGACATGCAAATAGTTATTGGGAAGGTAAACCGAACCATGAACACTATCAAGATCATGGCTAGAAGAGCCCGAGGATTTGCAGAACGGGCAAGGGATCTGCAAGAGAGTACTTCACCTATGGCTTCTTATGCAGATGAGTTGTTTGAGTTTTTAGGAATGATTCGTAGGGACCTTGGATACTTTGGTCATTTTCACTAA

Coding sequence (CDS)

ATGAGAATACTGCACTTAGAAGAGCAACTCGTTTATAAGAAGGCAGGATCAATGACCTTTCATCAAGAGGCAAAGAGACTCTTAAAGTTAGTTGTGGAATTAAATGAGACCATCAACAAGCAAAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCCCTATGTCGAACGTTGGACAATCTTCGTGTGAATATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTAAAGTTACATAAGCTCATTAGAAAACGTCAGTTCCAAGCATTTCAAAGAGCAAGCGAACAATTGTGGCTAGAGACAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGATTATGCCATTTTGAGAGACGACATGCAAATAGTTATTGGGAAGGTAAACCGAACCATGAACACTATCAAGATCATGGCTAGAAGAGCCCGAGGATTTGCAGAACGGGCAAGGGATCTGCAAGAGAGTACTTCACCTATGGCTTCTTATGCAGATGAGTTGTTTGAGTTTTTAGGAATGATTCGTAGGGACCTTGGATACTTTGGTCATTTTCACTAA

Protein sequence

MRILHLEEQLVYKKAGSMTFHQEAKRLLKLVVELNETINKQKTQLIEFEEANTALCRTLDNLRVNMQAQSEESEALKLHKLIRKRQFQAFQRASEQLWLETGQLEEKYSSLRGDYAILRDDMQIVIGKVNRTMNTIKIMARRARGFAERARDLQESTSPMASYADELFEFLGMIRRDLGYFGHFH

Homology

[Close]

BLAST of Lag0038210 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-19
Identity = 61/158 (38.61%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 28  LKLVVELNETINKQKTQLIEFEEANTALCRTLDNLRVNMQAQSEESEALKLHKLIRKRQF 87
           L+LV +LN +I K++TQ+++ E  N +L +T+DNL + M  +SEE E LK +      Q 
Sbjct: 216 LELVNDLNTSIGKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQL 275

Query: 88  QAFQRASEQLWLETGQLEEKYSSLRGDYAILRDDMQIVIGKVNRTMNTIKIMARRARGFA 147
            A Q +S+++  E   L   Y  ++ DY +   D Q+++ +V++T+  +++M++RA GFA
Sbjct: 276 TALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMMSKRANGFA 335

Query: 148 ERARDLQESTSPMASYADELFEFLGMIRRDLGYFGHFH 186
           E A DL+     M  +AD+L +FL MI R+LG+FG FH
Sbjct: 336 EWAADLRVKFFSMHPHADDLNKFLKMICRELGHFGRFH 373

[Close]

BLAST of Lag0038210 vs. NCBI nr
Match: KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 59/158 (37.34%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 28  LKLVVELNETINKQKTQLIEFEEANTALCRTLDNLRVNMQAQSEESEALKLHKLIRKRQF 87
           LKLV +LN +I K++T++++ E  N +L +T+D+L + M   SEE E LK +      Q 
Sbjct: 460 LKLVNDLNTSIRKRETKIMDLEAQNHSLRQTVDSLHLKMVEHSEEYEILKNYADSLHYQL 519

Query: 88  QAFQRASEQLWLETGQLEEKYSSLRGDYAILRDDMQIVIGKVNRTMNTIKIMARRARGFA 147
            A Q +S+++  E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA  FA
Sbjct: 520 TALQNSSKRITQEYESLNTDYVQMKVDYDMQTRDFQVLVERVDQTIEFLRMVSKRANDFA 579

Query: 148 ERARDLQESTSPMASYADELFEFLGMIRRDLGYFGHFH 186
           E A DL+ +   M  +AD+L  FL MI R+LG+FGHFH
Sbjct: 580 ESAADLRVNFFSMQPHADDLNRFLKMICRELGHFGHFH 617

[Close]

BLAST of Lag0038210 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-18
Identity = 58/158 (36.71%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 28  LKLVVELNETINKQKTQLIEFEEANTALCRTLDNLRVNMQAQSEESEALKLHKLIRKRQF 87
           L+LV +LN +I K++TQ+++ E  N +L +T+D+L + M  +SEE E LK +      Q 
Sbjct: 168 LELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQL 227

Query: 88  QAFQRASEQLWLETGQLEEKYSSLRGDYAILRDDMQIVIGKVNRTMNTIKIMARRARGFA 147
            A Q +S+++  E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GFA
Sbjct: 228 TALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFA 287

Query: 148 ERARDLQESTSPMASYADELFEFLGMIRRDLGYFGHFH 186
           E A DL+ +   +  +AD+L  FL MI R+LG+FG FH
Sbjct: 288 EWAADLRVNFFSIQPHADDLNRFLKMICRELGHFGRFH 325

[Close]

BLAST of Lag0038210 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 7.1e-18
Identity = 58/158 (36.71%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 28  LKLVVELNETINKQKTQLIEFEEANTALCRTLDNLRVNMQAQSEESEALKLHKLIRKRQF 87
           L+ V +LN +I K++TQ+++ E  N +L +T+D+L + M   SEE E LK +      Q 
Sbjct: 191 LERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVESLHYQL 250

Query: 88  QAFQRASEQLWLETGQLEEKYSSLRGDYAILRDDMQIVIGKVNRTMNTIKIMARRARGFA 147
            A Q +S ++  E   L   Y  ++ DY +   D Q+++ +V++T+  ++++++RA GFA
Sbjct: 251 TALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFA 310

Query: 148 ERARDLQESTSPMASYADELFEFLGMIRRDLGYFGHFH 186
           E A DL+ +   +  +AD+L  FL MI R+LG+FGHFH
Sbjct: 311 EWAADLRVNFFSIQPHADDLNRFLKMICRELGHFGHFH 348

[Close]

BLAST of Lag0038210 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 7.8e-17
Identity = 57/155 (36.77%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 28  LKLVVELNETINKQKTQLIEFEEANTALCRTLDNLRVNMQAQSEESEALKLHKLIRKRQF 87
           L+LV +L  +I K++ Q+++ E  N +L +T+D+L V M   SE+ + LK +      Q 
Sbjct: 226 LELVNDLKSSIGKREAQIVDLEVHNCSLRQTVDSLHVKMVEHSEDYKILKNYADSLHHQL 285

Query: 88  QAFQRASEQLWLETGQLEEKYSSLRGDYAILRDDMQIVIGKVNRTMNTIKIMARRARGFA 147
            AFQ +SE++  E   L+  Y  ++ DY + R D Q ++ +V++T+  ++I++RRA GFA
Sbjct: 286 TAFQNSSERIVQEYKLLKTDYMQMKVDYDLQRRDFQTLVERVDQTIGFLRIVSRRANGFA 345

Query: 148 ERARDLQESTSPMASYADELFEFLGMIRRDLGYFG 183
           E A DL+ +   +  ++D+L  FL MI R+LG+FG
Sbjct: 346 EWAADLRINFFSIRPHSDDLNRFLKMICRELGHFG 380

The following BLAST results are available for this feature:

BLAST of Lag0038210 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18656.1	1.7e-19	38.61	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036949.1	1.1e-18	37.34	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	4.2e-18	36.71	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	7.1e-18	36.71	girdin-like [Cucumis melo var. makuwa]	[more]
XP_031738551.1	7.8e-17	36.77	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]

BLAST of Lag0038210 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	COILS	Coil	Coil	coord: 24..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038210.1	Lag0038210.1	mRNA