Lag0038208 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038208
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr2: 13804651 .. 13805304 (+)
RNA-Seq Expression	Lag0038208
Synteny	Lag0038208

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCTGTGACAGATGGACAAGTTTAGTTATGGGATGCGTTGAATCGGTGAGATTCCAAGTTCTCCTTAATGGAGTTCCTCGTTCAGAGTTTACTCCAAACCGTGGTCTAAGACAAAGAGATCCTCTCTCTTCTTATTTATTCTTGATCTATGCAGAAGGTTTATCGGGACTTCTCAACCACTATGAGAGGAATAAGGAGATCACAACTACTGAAACAGGTTGCAGGTCCATCCAAAGAATCCTCCATATATACGAAAAAGCATCGAGACAAACTGTTAACTTTGAGAAATTAAACTTTATGGTTAGTCCCAACACAAGCATTGGGCGTATCAACACTATTAGGGACACCCTAAAGGTTCATCACATAGAGAGTTTTGGGCAATATCTTGGTTTACCATCTCAAAATGCGAAGAACAAACGAGAAATTTTTGACAATATTAAAGATCGAGTGTGGAATACACTTCAAGGGTGGAAAGGGAAGTTTTTCTCAACCGCGGGCAGAGAAATCCTCATTAAATCTGTAGCTCAAGCAATTCTAAACTACGCCATGAGCTGTTTCAAATTTCCTGTAACCTTGTGTAACGAGCTTAACTGTTTTTGTGCAAGGTTTTGGTGGGGATCATCGAAGGAAGGAAGGAAGATTCATTGA

mRNA sequence

ATGGGTTTCTGTGACAGATGGACAAGTTTAGTTATGGGATGCGTTGAATCGGTGAGATTCCAAGTTCTCCTTAATGGAGTTCCTCGTTCAGAGTTTACTCCAAACCGTGGTCTAAGACAAAGAGATCCTCTCTCTTCTTATTTATTCTTGATCTATGCAGAAGGTTTATCGGGACTTCTCAACCACTATGAGAGGAATAAGGAGATCACAACTACTGAAACAGGTTGCAGGTCCATCCAAAGAATCCTCCATATATACGAAAAAGCATCGAGACAAACTGTTAACTTTGAGAAATTAAACTTTATGGTTAGTCCCAACACAAGCATTGGGCGTATCAACACTATTAGGGACACCCTAAAGGTTCATCACATAGAGAGTTTTGGGCAATATCTTGGTTTACCATCTCAAAATGCGAAGAACAAACGAGAAATTTTTGACAATATTAAAGATCGAGTGTGGAATACACTTCAAGGGTGGAAAGGGAAGTTTTTCTCAACCGCGGGCAGAGAAATCCTCATTAAATCTGTAGCTCAAGCAATTCTAAACTACGCCATGAGCTGTTTCAAATTTCCTGTAACCTTGTGTAACGAGCTTAACTGTTTTTGTGCAAGGTTTTGGTGGGGATCATCGAAGGAAGGAAGGAAGATTCATTGA

Coding sequence (CDS)

ATGGGTTTCTGTGACAGATGGACAAGTTTAGTTATGGGATGCGTTGAATCGGTGAGATTCCAAGTTCTCCTTAATGGAGTTCCTCGTTCAGAGTTTACTCCAAACCGTGGTCTAAGACAAAGAGATCCTCTCTCTTCTTATTTATTCTTGATCTATGCAGAAGGTTTATCGGGACTTCTCAACCACTATGAGAGGAATAAGGAGATCACAACTACTGAAACAGGTTGCAGGTCCATCCAAAGAATCCTCCATATATACGAAAAAGCATCGAGACAAACTGTTAACTTTGAGAAATTAAACTTTATGGTTAGTCCCAACACAAGCATTGGGCGTATCAACACTATTAGGGACACCCTAAAGGTTCATCACATAGAGAGTTTTGGGCAATATCTTGGTTTACCATCTCAAAATGCGAAGAACAAACGAGAAATTTTTGACAATATTAAAGATCGAGTGTGGAATACACTTCAAGGGTGGAAAGGGAAGTTTTTCTCAACCGCGGGCAGAGAAATCCTCATTAAATCTGTAGCTCAAGCAATTCTAAACTACGCCATGAGCTGTTTCAAATTTCCTGTAACCTTGTGTAACGAGCTTAACTGTTTTTGTGCAAGGTTTTGGTGGGGATCATCGAAGGAAGGAAGGAAGATTCATTGA

Protein sequence

MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLLNHYERNKEITTTETGCRSIQRILHIYEKASRQTVNFEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNTLQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRKIH

Homology

[Close]

BLAST of Lag0038208 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 3.7e-50
Identity = 108/199 (54.27%), Postives = 127/199 (63.82%), Query Frame = 0


Query: 1   MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
           MGF +RW  L+M CVESVRF VL+NGVP  EFTPNRGLRQ DPLS YLF++ AEGLS L+
Sbjct: 416 MGFANRWVDLIMNCVESVRFAVLINGVPGDEFTPNRGLRQGDPLSPYLFIMCAEGLSALI 475

Query: 61  NHYERNKEIT------------------------TTETG-CRSIQRILHIYEKASR-QTV 120
           N  E+   IT                           TG CRSI+ IL  YEKAS  Q +
Sbjct: 476 NDEEKKGNITRLKINRRCPPISHLFYADDCLLFFKASTGNCRSIKGILESYEKASSGQCI 535

Query: 121 NFEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWN 174
           N +K  F+VS NT    +  IR  L V+H ES GQYLGLPSQ  +NKR++F+NIKDRVW 
Sbjct: 536 NLDKSMFIVSKNTKEQMVGVIRQELMVNHTESLGQYLGLPSQTGRNKRQVFNNIKDRVWK 595

[Close]

BLAST of Lag0038208 vs. NCBI nr
Match: XP_030923330.1 (uncharacterized protein LOC115950239 [Quercus lobata])

HSP 1 Score: 206.1 bits (523), Expect = 3.1e-49
Identity = 109/242 (45.04%), Postives = 135/242 (55.79%), Query Frame = 0


Query: 1    MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
            MGF   W   VM CV +  F +L+NG P     P+RG+RQ DP+S YLFL+ AEGL+ LL
Sbjct: 997  MGFPAGWIERVMSCVTTPSFSILVNGKPYEMIQPSRGIRQGDPISPYLFLLCAEGLTALL 1056

Query: 61   NHYERNKEIT-------------------------TTETGCRSIQRILHIYEKASRQTVN 120
            N  E N  IT                          T     +I  IL IYE+AS Q++N
Sbjct: 1057 NKAELNGMITGVSICRGAPKITNLMFADDSLLFCQATRAEGETIAEILQIYERASGQSIN 1116

Query: 121  FEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNT 180
             EK +   S NTS G+   I + L V  ++ F +YLGLP+   + K   F  +KDRVW  
Sbjct: 1117 LEKSSAYFSTNTSEGQKGQILEILGVKEVDRFVKYLGLPTLIGRAKYNTFSELKDRVWKK 1176

Query: 181  LQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRK 218
            LQGWKG   S AG+EILIK+VAQAI  Y MS F+ P+ LC+EL   CARFWWG     RK
Sbjct: 1177 LQGWKGMLLSRAGKEILIKAVAQAIPTYTMSVFQIPLKLCSELEALCARFWWGQVGNERK 1236

[Close]

BLAST of Lag0038208 vs. NCBI nr
Match: XP_023923071.1 (uncharacterized protein LOC112034488 [Quercus suber])

HSP 1 Score: 206.1 bits (523), Expect = 3.1e-49
Identity = 107/243 (44.03%), Postives = 140/243 (57.61%), Query Frame = 0


Query: 1   MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
           MGF D W  L+M C+ S  + VL+NG P  + TP RGLRQ DPLS YLFL+  EG  GLL
Sbjct: 528 MGFNDIWVHLMMQCISSATYSVLINGEPHGKITPTRGLRQGDPLSPYLFLLCTEGFHGLL 587

Query: 61  NHYERNKEI--------------------------TTTETGCRSIQRILHIYEKASRQTV 120
              E   +I                          + TE  C  +  IL IYE+AS Q +
Sbjct: 588 RKAESVGDIRGVSLCKKGPKLTHLLFADDSLIFCKSKTEE-CAKLLEILAIYERASGQQI 647

Query: 121 NFEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWN 180
           N +K     S +T+ G  + I+++L V  ++ + +YLGLPS   + K+E FDNIK +VW 
Sbjct: 648 NRDKTKLFFSKSTAPGVQDAIKNSLGVSVVQQYEKYLGLPSFIGRKKKESFDNIKQQVWK 707

Query: 181 TLQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGR 218
            LQGW+GK  S AGREILIK+VAQA+  Y MSCFK P  LC+++     RF+WG   EGR
Sbjct: 708 KLQGWEGKLLSQAGREILIKAVAQALPTYTMSCFKLPSGLCHDIEAQIRRFFWGQRGEGR 767

[Close]

BLAST of Lag0038208 vs. NCBI nr
Match: XP_022841874.1 (uncharacterized protein LOC111365549 [Olea europaea var. sylvestris])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-48
Identity = 107/242 (44.21%), Postives = 134/242 (55.37%), Query Frame = 0


Query: 1    MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
            +GF D+   LVM CV +  F +L+NG P    TP+RGLRQ DP+S YLFLI  EGL  LL
Sbjct: 981  LGFHDKIIQLVMKCVTTTSFSILINGSPTGHITPSRGLRQGDPISPYLFLICTEGLVNLL 1040

Query: 61   NHYERNKEIT-------------------------TTETGCRSIQRILHIYEKASRQTVN 120
            N  ERNK +T                           E+    +Q +L  YE AS Q +N
Sbjct: 1041 NKAERNKNVTGIQVCRGAPSLNHLLFADDSLIFCEANESTTSRLQALLSSYEDASGQQLN 1100

Query: 121  FEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNT 180
             +K + + S N S  +  +I        ++ + +YLGLP    ++K   F +IK +VW  
Sbjct: 1101 RDKTSMVFSANVSQDKQESIMALSNAPQVQQYDKYLGLPPMVGRSKTRAFSDIKHKVWLK 1160

Query: 181  LQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRK 218
            LQGWK   FS  GREIL+KSVA AI +YAMSCFK P TLC EL    ARFWWG  KE RK
Sbjct: 1161 LQGWKSSMFSQGGREILLKSVALAIPSYAMSCFKLPSTLCTELEKTMARFWWGQRKEERK 1220

[Close]

BLAST of Lag0038208 vs. NCBI nr
Match: XP_023889222.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-48
Identity = 102/242 (42.15%), Postives = 137/242 (56.61%), Query Frame = 0


Query: 1    MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
            MGF D+W +L+M C+ +V + +++NG P S   P+RG+RQ DPLS YLFL+  EGL  LL
Sbjct: 867  MGFDDKWVALLMECITTVSYSIMINGEPTSVIRPSRGIRQGDPLSPYLFLLCTEGLHNLL 926

Query: 61   NHYERNKEI-------------------------TTTETGCRSIQRILHIYEKASRQTVN 120
            +       I                           +   C+ +Q +L  YEKAS Q +N
Sbjct: 927  HQAAATGHIRGVSICKKGPRLTHLFFADDSLIFCRASMLECQKVQSLLSCYEKASGQLLN 986

Query: 121  FEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNT 180
              K +   S  T    +N I+ +L V  ++   +YLGLP+   KNK+E F  IK+RVW  
Sbjct: 987  LHKTSLFFSKATHPDILNQIKASLGVQEVKHCEKYLGLPTLIGKNKKESFRYIKERVWAK 1046

Query: 181  LQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRK 218
            LQGWK +  S AGRE+L+K+V QAI  YAMSCFK P+TLCNE+     +FWWG   E RK
Sbjct: 1047 LQGWKEQLLSQAGREVLLKAVIQAIPTYAMSCFKLPITLCNEIESLIKKFWWGQRGEQRK 1106

[Close]

BLAST of Lag0038208 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-06
Identity = 27/85 (31.76%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 133 LPSQNAKNKREIFDNIKDRVWNTLQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPV 192
           +P    +  ++ F  I +RV + + GW+ K  S AGR  L K+V  ++  ++MS    P 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 193 TLCNELNCFCARFWWGSSKEGRKIH 218
           ++ N L+     F WGS+ E +K H
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQH 85

[Close]

BLAST of Lag0038208 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 23 LLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGL 60
          ++NG P+   TP+RGLRQ DPLS YLF++  E LSGL
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGL 49

[Close]

BLAST of Lag0038208 vs. ExPASy TrEMBL
Match: A0A2N9EK17 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7109 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 9.2e-55
Identity = 108/217 (49.77%), Postives = 135/217 (62.21%), Query Frame = 0


Query: 1   MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
           MGF  RW +L+M C+ +V + VL+NG P     P+RGLRQ DPLS YLFLI AEGLS L 
Sbjct: 157 MGFESRWVNLIMECLSTVNYSVLINGEPHGYIRPSRGLRQGDPLSPYLFLICAEGLSALF 216

Query: 61  NHYERNKEITTTETGCRSIQRILHIYEKASRQTVNFEKLNFMVSPNTSIGRINTIRDTLK 120
              ER + +   ++   +++ ILH YE AS Q +NFEK  F  S NT       I   L 
Sbjct: 217 RAAERERRLCALQSDSMALKEILHNYEMASGQQLNFEKSAFFFSKNTPQQIKEDISTILG 276

Query: 121 VHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNTLQGWKGKFFSTAGREILIKSVAQAI 180
                +FG+YLGLP    + KR+ F+  K R+W  LQGWKGK  S AGRE+LIK+VA AI
Sbjct: 277 TSLTSNFGKYLGLPPLIGRKKRQAFEENKTRIWKRLQGWKGKLLSQAGREVLIKAVAYAI 336

Query: 181 LNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRKIH 218
             YAMSCFK P TLC+E+    +RFWWG   + RKIH
Sbjct: 337 PTYAMSCFKIPETLCSEIQALTSRFWWGQRGDERKIH 373

[Close]

BLAST of Lag0038208 vs. ExPASy TrEMBL
Match: A0A2N9H0J9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33051 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52
Identity = 109/242 (45.04%), Postives = 138/242 (57.02%), Query Frame = 0


Query: 1    MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
            MGF  +W SL+M C+ +V + +L+NG PR   TP+RGLRQ DP+S YLFL+ AEGL+GLL
Sbjct: 1001 MGFHSQWVSLMMECITTVSYSLLINGEPRGHITPSRGLRQGDPISPYLFLLCAEGLNGLL 1060

Query: 61   NHYERNKEI-------------------------TTTETGCRSIQRILHIYEKASRQTVN 120
            N      EI                           T+  C  IQ +L+IYEKAS Q +N
Sbjct: 1061 NKAAAQGEIHGVSLCRRGPKLTHLFFADDSLLFCRATQAECHKIQDLLNIYEKASGQQLN 1120

Query: 121  FEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNT 180
              K     S NTS    + I++ L V  I  + +YLGLPS   K K   F  IKDRVW+ 
Sbjct: 1121 RSKTTLFFSHNTSQATQDDIKNILGVPSIRQYEKYLGLPSLVGKEKMACFSQIKDRVWSK 1180

Query: 181  LQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRK 218
            ++GWK K  S AGREILIK+V QAI  Y M+CFK PV LC ++     RFWWG   + RK
Sbjct: 1181 VKGWKEKLLSQAGREILIKAVIQAIPTYTMNCFKLPVKLCKDIEAIMRRFWWGQKDQERK 1240

[Close]

BLAST of Lag0038208 vs. ExPASy TrEMBL
Match: A0A2N9GB96 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27778 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52
Identity = 109/242 (45.04%), Postives = 138/242 (57.02%), Query Frame = 0


Query: 1    MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
            MGF  +W SL+M C+ +V + +L+NG PR   TP+RGLRQ DP+S YLFL+ AEGL+GLL
Sbjct: 1001 MGFHSQWVSLMMECITTVSYSLLINGEPRGHITPSRGLRQGDPISPYLFLLCAEGLNGLL 1060

Query: 61   NHYERNKEI-------------------------TTTETGCRSIQRILHIYEKASRQTVN 120
            N      EI                           T+  C  IQ +L+IYEKAS Q +N
Sbjct: 1061 NKAAAQGEIHGVSLCRRGPKLTHLFFADDSLLFCRATQAECHKIQDLLNIYEKASGQQLN 1120

Query: 121  FEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNT 180
              K     S NTS    + I++ L V  I  + +YLGLPS   K K   F  IKDRVW+ 
Sbjct: 1121 RSKTTLFFSHNTSQATQDDIKNILGVPSIRQYEKYLGLPSLVGKEKMACFSQIKDRVWSK 1180

Query: 181  LQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRK 218
            ++GWK K  S AGREILIK+V QAI  Y M+CFK PV LC ++     RFWWG   + RK
Sbjct: 1181 VKGWKEKLLSQAGREILIKAVIQAIPTYTMNCFKLPVKLCKDIEAIMRRFWWGQKDQERK 1240

[Close]

BLAST of Lag0038208 vs. ExPASy TrEMBL
Match: A0A2N9GLG8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28235 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52
Identity = 109/242 (45.04%), Postives = 138/242 (57.02%), Query Frame = 0


Query: 1   MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
           MGF  +W SL+M C+ +V + +L+NG PR   TP+RGLRQ DP+S YLFL+ AEGL+GLL
Sbjct: 446 MGFHSQWVSLMMECITTVSYSLLINGEPRGHITPSRGLRQGDPISPYLFLLCAEGLNGLL 505

Query: 61  NHYERNKEI-------------------------TTTETGCRSIQRILHIYEKASRQTVN 120
           N      EI                           T+  C  IQ +L+IYEKAS Q +N
Sbjct: 506 NKAAAQGEIHGVSLCRRGPKLTHLFFADDSLLFCRATQAECHKIQDLLNIYEKASGQQLN 565

Query: 121 FEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNT 180
             K     S NTS    + I++ L V  I  + +YLGLPS   K K   F  IKDRVW+ 
Sbjct: 566 RSKTTLFFSHNTSQATQDDIKNILGVPSIRQYEKYLGLPSLVGKEKMACFSQIKDRVWSK 625

Query: 181 LQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRK 218
           ++GWK K  S AGREILIK+V QAI  Y M+CFK PV LC ++     RFWWG   + RK
Sbjct: 626 VKGWKEKLLSQAGREILIKAVIQAIPTYTMNCFKLPVKLCKDIEAIMRRFWWGQKDQERK 685

[Close]

BLAST of Lag0038208 vs. ExPASy TrEMBL
Match: A0A2N9GYM1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32617 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52
Identity = 109/242 (45.04%), Postives = 138/242 (57.02%), Query Frame = 0


Query: 1   MGFCDRWTSLVMGCVESVRFQVLLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGLL 60
           MGF  +W SL+M C+ +V + +L+NG PR   TP+RGLRQ DP+S YLFL+ AEGL+GLL
Sbjct: 505 MGFHSQWVSLMMECITTVSYSLLINGEPRGHITPSRGLRQGDPISPYLFLLCAEGLNGLL 564

Query: 61  NHYERNKEI-------------------------TTTETGCRSIQRILHIYEKASRQTVN 120
           N      EI                           T+  C  IQ +L+IYEKAS Q +N
Sbjct: 565 NKAAAQGEIHGVSLCRRGPKLTHLFFADDSLLFCRATQAECHKIQDLLNIYEKASGQQLN 624

Query: 121 FEKLNFMVSPNTSIGRINTIRDTLKVHHIESFGQYLGLPSQNAKNKREIFDNIKDRVWNT 180
             K     S NTS    + I++ L V  I  + +YLGLPS   K K   F  IKDRVW+ 
Sbjct: 625 RSKTTLFFSHNTSQATQDDIKNILGVPSIRQYEKYLGLPSLVGKEKMACFSQIKDRVWSK 684

Query: 181 LQGWKGKFFSTAGREILIKSVAQAILNYAMSCFKFPVTLCNELNCFCARFWWGSSKEGRK 218
           ++GWK K  S AGREILIK+V QAI  Y M+CFK PV LC ++     RFWWG   + RK
Sbjct: 685 VKGWKEKLLSQAGREILIKAVIQAIPTYTMNCFKLPVKLCKDIEAIMRRFWWGQKDQERK 744

[Close]

BLAST of Lag0038208 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 23 LLNGVPRSEFTPNRGLRQRDPLSSYLFLIYAEGLSGL 60
          ++NG P+   TP+RGLRQ DPLS YLF++  E LSGL
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGL 49

The following BLAST results are available for this feature:

BLAST of Lag0038208 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157437.1	3.7e-50	54.27	uncharacterized protein LOC111024135 [Momordica charantia]	[more]
XP_030923330.1	3.1e-49	45.04	uncharacterized protein LOC115950239 [Quercus lobata]	[more]
XP_023923071.1	3.1e-49	44.03	uncharacterized protein LOC112034488 [Quercus suber]	[more]
XP_022841874.1	1.2e-48	44.21	uncharacterized protein LOC111365549 [Olea europaea var. sylvestris]	[more]
XP_023889222.1	1.2e-48	42.15	LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber]	[more]

BLAST of Lag0038208 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	1.2e-06	31.76	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P92555	2.2e-05	59.46	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lag0038208 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9EK17	9.2e-55	49.77	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9H0J9	3.3e-52	45.04	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33051 PE=4 SV=1	[more]
A0A2N9GB96	3.3e-52	45.04	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27778 PE=4 SV=1	[more]
A0A2N9GLG8	3.3e-52	45.04	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9GYM1	3.3e-52	45.04	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]

BLAST of Lag0038208 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	1.6e-06	59.46	RNA-directed DNA polymerase (reverse transcriptase)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 1..215
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038208.1	Lag0038208.1	mRNA