Lag0038179 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038179
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSerine-rich family protein
Locationchr2: 13383992 .. 13384321 (+)
RNA-Seq ExpressionLag0038179
SyntenyLag0038179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCACAAACCAGATCACAAGGCTCCAAGGCCCAGCGACAGACACAACCACAATCACCACCACCACAAAACGTCCACCACAGACTTCAGTTTAGAGGATTTGAAGCGAAGTCCTCACCGCTTCCTCTCTCCCTCGTCGCAATCGCCGGCGCCCAAGCCCTCCTCCGCCTCCAAGGGGAATTGCCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGGCACCATCGCCACTCCGGCATGCTCCGCGGCGGCTCCGTCGGATCCAATCTCTCCGATTTGGATCGGAAATCGACTCCAATTATGGGATCCTATTCGCCTTGA

mRNA sequence

ATGGATCACAAACCAGATCACAAGGCTCCAAGGCCCAGCGACAGACACAACCACAATCACCACCACCACAAAACGTCCACCACAGACTTCAGTTTAGAGGATTTGAAGCGAAGTCCTCACCGCTTCCTCTCTCCCTCGTCGCAATCGCCGGCGCCCAAGCCCTCCTCCGCCTCCAAGGGGAATTGCCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGGCACCATCGCCACTCCGGCATGCTCCGCGGCGGCTCCGTCGGATCCAATCTCTCCGATTTGGATCGGAAATCGACTCCAATTATGGGATCCTATTCGCCTTGA

Coding sequence (CDS)

ATGGATCACAAACCAGATCACAAGGCTCCAAGGCCCAGCGACAGACACAACCACAATCACCACCACCACAAAACGTCCACCACAGACTTCAGTTTAGAGGATTTGAAGCGAAGTCCTCACCGCTTCCTCTCTCCCTCGTCGCAATCGCCGGCGCCCAAGCCCTCCTCCGCCTCCAAGGGGAATTGCCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGGCACCATCGCCACTCCGGCATGCTCCGCGGCGGCTCCGTCGGATCCAATCTCTCCGATTTGGATCGGAAATCGACTCCAATTATGGGATCCTATTCGCCTTGA

Protein sequence

MDHKPDHKAPRPSDRHNHNHHHHKTSTTDFSLEDLKRSPHRFLSPSSQSPAPKPSSASKGNCLCSPTTHIGSFRCRHHRHSGMLRGGSVGSNLSDLDRKSTPIMGSYSP
Homology
BLAST of Lag0038179 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-32
Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 0

Query: 1   MDHKPDHKAPRPSDRHNHN-------HHHHKTSTTDFSLEDLKRSPHRFLSPSSQSP-AP 60
           MD+K DH+APRP+DR+NHN       HHHHK + TD +LEDLK++P   +SPS  S  A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KPSSASKGNCLCSPTTHIGSFRCRHHRHSGMLRGGSVGSNLSDLDRKSTPIMGSYSP 110
           +  S++K NCLCSPTTHIGSFRCRHHRHSGM+RGGSVGSNLSDL RK T I+GS+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

BLAST of Lag0038179 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 1   MDHKPDHKAPRPSDRHNHNHHHHKTSTTDFSLEDLKRSPHRFLSPSSQSPAPKPSSASKG 60
           MDHKPDH+APRP DR+N N HHHKT  TDF LED K+  +   S  S+S APK  S++K 
Sbjct: 1   MDHKPDHRAPRPIDRNNPN-HHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKA 60

Query: 61  NCLCSPTTHIGSFRCRHHRHSGMLRGGSVGSNLSDLDRKSTPIMGSYSP 110
           +CLCSPTTHIGSFRCRHHRH+GMLRG SVGSNLS+L  KST +M SYSP
Sbjct: 61  SCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108

BLAST of Lag0038179 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-29
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MDHKPDHKAPRPSDRHNHNHHHHKTSTTDFSLEDLKRSPHRFLSPSSQSPAPKPSSASKG 60
           MDHKPDH+APRP+ RH+ + HH+K   TDF LEDLKRSP   +SPS  S   K S A+KG
Sbjct: 1   MDHKPDHRAPRPTHRHSLD-HHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKG 60

Query: 61  NCLCSPTTHIGSFRCRHHRHS-GMLRGGSVGSNLSDLDRKSTPIMG 106
           +CLCSPTTHIGSFRCRHHR S G+LRGGSVGSNLSDLDRKS+  MG
Sbjct: 61  SCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 105

BLAST of Lag0038179 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 28  TDFSLEDLKRSPHRFL-SPSSQSPAPKPSSASKGNCLCSPTTHIGSFRCRHHRHSGMLRG 87
           T+ +L DLK + H  L SPS  S A K  S++K NCLCSPTTHIGSFRCRHHRH+GM+RG
Sbjct: 4   TELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRG 63

Query: 88  GSVGSNLSDLDRKSTPIMGSYSP 110
           GSVGSNLSDL RK T IMG +SP
Sbjct: 64  GSVGSNLSDLARKPTEIMGPFSP 86

BLAST of Lag0038179 vs. NCBI nr
Match: KAF4362350.1 (hypothetical protein F8388_008234 [Cannabis sativa])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 23  HKTSTTDFSLEDLKRSPH-RFLSPSSQSPAPKPSSASKGNCLCSPTTHIGSFRCRHHRHS 82
           +K +  + +LED K+  H   +SP +++P+   SS+++ NCLCSPTTH+GSFRCRHHR  
Sbjct: 19  YKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVGSFRCRHHRSL 78

Query: 83  GMLRGGSVGSNLSDLDRKSTPI 104
           GMLRGGSVGSNL+DL RKS+ I
Sbjct: 79  GMLRGGSVGSNLADLGRKSSSI 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN44385.16.6e-3265.81hypothetical protein Csa_015645 [Cucumis sativus][more]
KAG7024984.14.3e-3168.81hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607735.11.4e-2970.75hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0048240.11.4e-2168.67putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D... [more]
KAF4362350.12.3e-1657.32hypothetical protein F8388_008234 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availablePANTHERPTHR33132:SF73SERINE-RICH PROTEIN-LIKE PROTEINcoord: 43..96
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 43..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038179.1Lag0038179.1mRNA