Lag0038161 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038161
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr2: 13201259 .. 13201935 (+)
RNA-Seq Expression	Lag0038161
Synteny	Lag0038161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCCGACCTCGATTTGGCCTTCCAACTTCAACTGCAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTTAATAGAACCATCTCCATCACTTAACAGGTCTGCCCCTGTCTTGGAGTCTGAAGAAACCGACCCTTCTCATGTGGTTTTTGTTTTTTTTTCGTTTCTTTCTCAGATCTGAAAAAGGAGTATGGTTTTTTTTTTTTTTTTTTGCTTAGATTTGCTCTGTGGGTGTTCGGAGGTGGGGGAGATGAAGAAGGGCGGCGACGGCAACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGGGTATGAGGGAGAGAGACGGTAAAAAAGGGTGGGAAAAGAGATATTGGTAGAGAGAGAAGGGAAACGCCGTTTGGTGAAGAAGATGAAGGAACAGAGAAGGAGAGAGGAAAACGCCATTGGAGGAGGAAGAATAAAGAGAGGAAAGTTTCTAAAGTTTTTTTTTTTTTTGGTGTAAAGGTGTTCGCAAATGTGGCGATGTTGGTGTCAGTCACGGAAAATCCGGCGGCGGGAGAAGCTCTGGCGGCGGCGGGAGGAGGCTCCGGCGATAG

mRNA sequence

ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCCGACCTCGATTTGGCCTTCCAACTTCAACTGCAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTTAATAGAACCATCTCCATCACTTAACAGATTTGCTCTGTGGGTGTTCGGAGGTGGGGGAGATGAAGAAGGGCGGCGACGGCAACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGGGTGTTCGCAAATGTGGCGATGTTGGTGTCAGTCACGGAAAATCCGGCGGCGGGAGAAGCTCTGGCGGCGGCGGGAGGAGGCTCCGGCGATAG

Coding sequence (CDS)

ATGGCGGACACCATGGACGACGATTACCTTCAAGACATAATCACCGAGCAACATTCCAAACTCCTCGCCGCCAAAACCCTCGTCTCCGACCTCGATTTGGCCTTCCAACTTCAACTGCAGGAGGCCATGAATGCCTCTCTCAAGTCTATGCCCTTAATAGAACCATCTCCATCACTTAACAGATTTGCTCTGTGGGTGTTCGGAGGTGGGGGAGATGAAGAAGGGCGGCGACGGCAACGGACTATCGTCGGTGAGAAGGGGAAAGGAGAGGAAAGGATTTGGGGGGGGGGTGTTCGCAAATGTGGCGATGTTGGTGTCAGTCACGGAAAATCCGGCGGCGGGAGAAGCTCTGGCGGCGGCGGGAGGAGGCTCCGGCGATAG

Protein sequence

MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQLQEAMNASLKSMPLIEPSPSLNRFALWVFGGGGDEEGRRRQRTIVGEKGKGEERIWGGGVRKCGDVGVSHGKSGGGRSSGGGGRRLRR

Homology

[Close]

BLAST of Lag0038161 vs. NCBI nr
Match: XP_022157931.1 (uncharacterized protein LOC111024540 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MADTM-DDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQLQEAMNASLKSMPLIEPSPSL 60
          MADTM DDDYLQ++++EQ S+LLAAKTL SDLDLAFQLQLQEAMNASL S P  +PSPS 
Sbjct: 1  MADTMDDDDYLQEVVSEQRSELLAAKTLFSDLDLAFQLQLQEAMNASLDSKPSTQPSPSR 60

Query: 61 NR 62
          NR
Sbjct: 61 NR 62

[Close]

BLAST of Lag0038161 vs. NCBI nr
Match: XP_038893965.1 (uncharacterized protein LOC120082751 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-14
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQLQEAMNASLKSMPLIEPSPSLN 60
          MADTMDDD +QD+IT+Q S+LL+AKTL SDLD AFQLQLQEAMNASL S P  EPS SLN
Sbjct: 1  MADTMDDDSIQDLITQQRSELLSAKTLFSDLDFAFQLQLQEAMNASLASKPSTEPSSSLN 60

[Close]

BLAST of Lag0038161 vs. NCBI nr
Match: KAG7019256.1 (dbl4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-12
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQLQEAMNASLKSMPLIEPSPSLN 60
          MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAMNASL S    +   ++N
Sbjct: 4  MADTVDDDYLQDLITEQRSEILAAKTLISDLDLAYQLQMQEAMNASLGSKSSSKRPATVN 63

Query: 61 R 62
          R
Sbjct: 64 R 64

[Close]

BLAST of Lag0038161 vs. NCBI nr
Match: XP_022964983.1 (uncharacterized protein LOC111464930 [Cucurbita moschata] >KAG6583501.1 hypothetical protein SDJN03_19433, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-12
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQLQEAMNASLKSMPLIEPSPSLN 60
          MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAMNASL S    +   ++N
Sbjct: 1  MADTVDDDYLQDLITEQRSEILAAKTLISDLDLAYQLQMQEAMNASLGSKSSSKGPATVN 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of Lag0038161 vs. NCBI nr
Match: XP_023519052.1 (uncharacterized protein LOC111782521 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-12
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MADTMDDDYLQDIITEQHSKLLAAKTLVSDLDLAFQLQLQEAMNASLKSMPLIEPSPSLN 60
          MADT+DDDYLQD+ITEQ S++LAAKTL+SDLDLA+QLQ+QEAM+ASL S    +   S+N
Sbjct: 1  MADTVDDDYLQDLITEQRSEILAAKTLISDLDLAYQLQMQEAMDASLGSKSSSKRPASVN 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:

BLAST of Lag0038161 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157931.1	1.1e-14	77.42	uncharacterized protein LOC111024540 [Momordica charantia]	[more]
XP_038893965.1	4.2e-14	76.67	uncharacterized protein LOC120082751 [Benincasa hispida]	[more]
KAG7019256.1	2.3e-12	68.85	dbl4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022964983.1	2.3e-12	68.85	uncharacterized protein LOC111464930 [Cucurbita moschata] >KAG6583501.1 hypothet...	[more]
XP_023519052.1	4.0e-12	68.85	uncharacterized protein LOC111782521 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0038161 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038161.1	Lag0038161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity