Lag0038159 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038159
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	chr2: 13185737 .. 13186657 (+)
RNA-Seq Expression	Lag0038159
Synteny	Lag0038159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTATGTCATCGCTTGATTTCTGCTTCTCAAGGATATTATTTATGATTTTTGCTTTGTTGTGCTTCTCGATCGGTTTGAGCTTTACTTCCTGCTGAATTTCCCTTTCCTTGATTCCATTTGTCTATTCATTTGATTTCCTTCTAGATTGTTCAATTCTGCACTTCTATGACTTCCACTTTGATTTGTTTATTCGTTTTCCTGATGTTGAAGCTGATTGATTCTGTTCTAGTTGTATTGGGGCAAAAATATAGATTTTCTGCTAGATTTTAATTAGTTGTTGGATGTCGTTTCTGAACTTTGAATCAATAAATTCGCTGGCTACATTCGAGTATATTATGTTGTTGGATTAACTGCTGTTGGAGGAAACTTTTTCTTGTTGGTTTTTTTTGTTTTGTTTTATTGATTCATATCGGATTTGAAGGTGCTTGTAAAATCCTTGGCCATAAAGCAATGTTGTATAGTAATTGATGGTGATTGTTAGATTCATAGTCCGATTAGTGAGGAAAGCTACCAGATTCATGGAGGGTACATCTTGTTGTTCTCTCTTTTTGTAGGACAAAGGTCGGCCACTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCTGCTGAGGGGTTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGTGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAAGGCAGGCCTCGAGCAGATCCTGGCAAGGCACCGTCTGTAAGATATCATTCATAATCCTTTTTCAATTTTTGCCGTTGGATGATTGTCATAGCTAGCTTGTCTGTTGATAGTATAGAGTACTTGGCATCTAAAGAATGCTTCTTTTGCACCTTTGGAGAATTGTTTGGTTTATTACTGTCAATGAATTTCTTAGAGCGTTGCTTCTGATAAGTGA

mRNA sequence

ATGTCGGACAAAGGTCGGCCACTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCTGCTGAGGGGTTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGTGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAAGGCAGGCCTCGAGCAGATCCTGGCAAGGCACCGTCTAGCGTTGCTTCTGATAAGTGA

Coding sequence (CDS)

ATGTCGGACAAAGGTCGGCCACTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCTGCTGAGGGGTTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGTGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAAGGCAGGCCTCGAGCAGATCCTGGCAAGGCACCGTCTAGCGTTGCTTCTGATAAGTGA

Protein sequence

MSDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPRADPGKAPSSVASDK

Homology

[Close]

BLAST of Lag0038159 vs. NCBI nr
Match: XP_038897827.1 (protein NOI4 [Benincasa hispida])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MSDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPRADPGK 60
          M+DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GRP ADP K
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAK 60

Query: 61 AP 63
          AP
Sbjct: 61 AP 62

[Close]

BLAST of Lag0038159 vs. NCBI nr
Match: XP_022139562.1 (RPM1-interacting protein 4 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MSDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPRADPGK 60
          M+DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRP ADP K
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSK 60

Query: 61 AP 63
          AP
Sbjct: 61 AP 62

[Close]

BLAST of Lag0038159 vs. NCBI nr
Match: KAG7037321.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MSDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPRADPGK 60
          M+DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRP A+P K
Sbjct: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60

Query: 61 AP 63
          AP
Sbjct: 61 AP 62

[Close]

BLAST of Lag0038159 vs. NCBI nr
Match: XP_022941007.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022981664.1 RPM1-interacting protein 4-like [Cucurbita maxima] >XP_023525056.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6607743.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MSDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPRADPGK 60
          M+DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRP A+P K
Sbjct: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60

Query: 61 AP 63
          AP
Sbjct: 61 AP 62

[Close]

BLAST of Lag0038159 vs. NCBI nr
Match: KAG7030269.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 3.2e-24
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MSDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPRADPGK 60
          M+DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR  ADP K
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 AP 63
          AP
Sbjct: 61 AP 62

[Close]

BLAST of Lag0038159 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-19
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MSDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPRA---D 60
          MSDKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G  ++   D
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGD 60

[Close]

BLAST of Lag0038159 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.4e-06
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 3   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG 40
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

The following BLAST results are available for this feature:

BLAST of Lag0038159 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897827.1	1.1e-24	93.55	protein NOI4 [Benincasa hispida]	[more]
XP_022139562.1	1.1e-24	93.55	RPM1-interacting protein 4 [Momordica charantia]	[more]
KAG7037321.1	1.4e-24	93.55	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022941007.1	1.4e-24	93.55	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022981664.1 RPM1-intera...	[more]
KAG7030269.1	3.2e-24	93.55	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0038159 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	1.9e-19	77.78	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	5.4e-06	54.05	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 e-value: 5.1E-23 score: 80.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 3..63
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 3..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038159.1	Lag0038159.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane