Lag0038096 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038096
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AAI domain-containing protein
Location	chr2: 12529378 .. 12529692 (+)
RNA-Seq Expression	Lag0038096
Synteny	Lag0038096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCAACAAGGTTTTGGTGGCAGTTCTGTTCTTGGTCGCCGTCGTTCTTCTGGGCGGCGCCACCGCCTCTCCGCTCTGTAAGATCGACACCACTGACCTCGGCGTTTGCCGCCCGGCGGTGACCACGCCCGCGCACGGCCAGCCTCTGCCGCTGCCGACCGACGAGTGCTGCGCGGTGGTCCGCCGTGCTGACCTTAAGTGTCTTTGCAACCTCAAGTCTTTGCTTCCGGCTATGGGGATTGACACTGCCAATGCCATGGCTTTGCCCACCAAATGTGGCCTCCCACTCCCCACCGAGTGTCATCTTTAG

mRNA sequence

ATGGCGGCCAACAAGGTTTTGGTGGCAGTTCTGTTCTTGGTCGCCGTCGTTCTTCTGGGCGGCGCCACCGCCTCTCCGCTCTGTAAGATCGACACCACTGACCTCGGCGTTTGCCGCCCGGCGGTGACCACGCCCGCGCACGGCCAGCCTCTGCCGCTGCCGACCGACGAGTGCTGCGCGGTGGTCCGCCGTGCTGACCTTAAGTGTCTTTGCAACCTCAAGTCTTTGCTTCCGGCTATGGGGATTGACACTGCCAATGCCATGGCTTTGCCCACCAAATGTGGCCTCCCACTCCCCACCGAGTGTCATCTTTAG

Coding sequence (CDS)

ATGGCGGCCAACAAGGTTTTGGTGGCAGTTCTGTTCTTGGTCGCCGTCGTTCTTCTGGGCGGCGCCACCGCCTCTCCGCTCTGTAAGATCGACACCACTGACCTCGGCGTTTGCCGCCCGGCGGTGACCACGCCCGCGCACGGCCAGCCTCTGCCGCTGCCGACCGACGAGTGCTGCGCGGTGGTCCGCCGTGCTGACCTTAAGTGTCTTTGCAACCTCAAGTCTTTGCTTCCGGCTATGGGGATTGACACTGCCAATGCCATGGCTTTGCCCACCAAATGTGGCCTCCCACTCCCCACCGAGTGTCATCTTTAG

Protein sequence

MAANKVLVAVLFLVAVVLLGGATASPLCKIDTTDLGVCRPAVTTPAHGQPLPLPTDECCAVVRRADLKCLCNLKSLLPAMGIDTANAMALPTKCGLPLPTECHL

Homology

[Close]

BLAST of Lag0038096 vs. NCBI nr
Match: KAG7037349.1 (putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 86/104 (82.69%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MAANKVLVAVLFLVAVVLLGGATASPLCKIDTTDLGVCRPAVTTPAHGQPLPLPTDECCA 60
           MA NKVLVA LFL+AV   GG  ASPLCKIDTTDLGVCRPAVTTP HGQPLPLPT+ CCA
Sbjct: 1   MAPNKVLVAALFLIAV---GGVLASPLCKIDTTDLGVCRPAVTTPEHGQPLPLPTEGCCA 60

Query: 61  VVRRADLKCLCNLKSLLPAMGIDTANAMALPTKCGLPLPTECHL 105
           VVRRADLKCLCNLKS+LPA+GID ANAMALP KCGL +P ECHL
Sbjct: 61  VVRRADLKCLCNLKSMLPAIGIDAANAMALPGKCGLSIPPECHL 101

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BLAST of Lag0038096 vs. NCBI nr
Match: XP_008447695.1 (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo] >KAA0048163.1 putative lipid-transfer protein DIR1 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-28
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MAANKVLVAVLFLVAVVLLGGATASPLCKIDTTDLGVCRPAVTTPAHGQPLPLPTDECCA 60
           MA +K+ + +L LV ++L G  T+SPLC+IDTTDL VCRPAVT P HG+ LPLPTD CC+
Sbjct: 1   MAPSKLHLLLLLLV-LLLAGAVTSSPLCEIDTTDLEVCRPAVTPPDHGKTLPLPTDACCS 60

Query: 61  VVRRADLKCLCNLKSLLPAMGIDTANAMALPTKCGLPLPTEC 103
           VVRRADLKCLC+LK  LP+ GI+TANA+ALP+KCG+  P EC
Sbjct: 61  VVRRADLKCLCSLKYALPSFGINTANALALPSKCGVSPPPEC 101

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BLAST of Lag0038096 vs. NCBI nr
Match: KAE8646001.1 (hypothetical protein Csa_015500 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 1  MAANKVLVAVLFLVAVVLLGGATASPLCKIDTTDLGVCRPAVTTPAHGQPLPLPTDECCA 60
          MA +K L  +L L+ ++L    TA PLCKIDT+DL +CR AVT P HGQPLPLPT++CC+
Sbjct: 1  MAPSK-LHLLLPLLVLLLPAAVTAYPLCKIDTSDLKLCRSAVTPPDHGQPLPLPTEDCCS 60

Query: 61 VVRRADLKCLCNLKSLLPAMGIDTANAMALPTKC 95
          VVR ADLKCLCNLKS+LP+MGIDTANA+ALP+KC
Sbjct: 61 VVRHADLKCLCNLKSVLPSMGIDTANALALPSKC 93

[Close]

BLAST of Lag0038096 vs. NCBI nr
Match: KAG6607773.1 (putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 5   KVLVAVLFLVAVVLLGGATASPLCKIDTTDLGVCRPAVTTPAHGQPLPLPTDECCAVVRR 64
           K L ++LF + +V   G  A+PLC++DT +L +C+PAV  P HGQPL  PT  CC+VVRR
Sbjct: 3   KFLASLLFSLFLV---GTIATPLCRVDTKELKMCQPAV-APPHGQPLQPPTKGCCSVVRR 62

Query: 65  ADLKCLCNLKSLLPAMGIDTANAMALPTKCGLPLPTEC 103
           ADLKCLC+LKS+LP +GI+TANA+ALP+KCG+  P EC
Sbjct: 63  ADLKCLCSLKSVLPTIGINTANALALPSKCGIHTPPEC 96

[Close]

BLAST of Lag0038096 vs. NCBI nr
Match: KAG7037350.1 (putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 5   KVLVAVLFLVAVVLLGGATASPLCKIDTTDLGVCRPAVTTPAHGQPLPLPTDECCAVVRR 64
           K L ++LF + +V   G  A+PLC++DT +L +C+PAV  P HGQ L  PT  CC+VVRR
Sbjct: 7   KFLASLLFSLFLV---GTIATPLCRVDTKELKMCQPAV-APPHGQLLQPPTKGCCSVVRR 66

Query: 65  ADLKCLCNLKSLLPAMGIDTANAMALPTKCGLPLPTECH 104
           ADLKCLC+LKS+LP +GI+TANA+ALP+KCG+  P ECH
Sbjct: 67  ADLKCLCSLKSVLPTIGINTANALALPSKCGIHTPPECH 101

The following BLAST results are available for this feature:

BLAST of Lag0038096 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037349.1	1.4e-39	82.69	putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_008447695.1	5.5e-28	65.69	PREDICTED: putative lipid-transfer protein DIR1 [Cucumis melo] >KAA0048163.1 put...	[more]
KAE8646001.1	1.2e-25	68.09	hypothetical protein Csa_015500 [Cucumis sativus]	[more]
KAG6607773.1	1.6e-22	59.18	putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7037350.1	2.7e-22	58.59	putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of Lag0038096 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 28..102 e-value: 8.3E-5 score: 32.0
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 9..99 e-value: 5.8E-9 score: 36.0
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 25..102 e-value: 6.6E-16 score: 59.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 31..100
None	No IPR available	PANTHER	PTHR33122:SF43	LIPID TRANSFER PROTEIN	coord: 6..103
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 6..103
IPR044741	Non-specific lipid-transfer protein-like	CDD	cd04660	nsLTP_like	coord: 28..99 e-value: 7.64686E-16 score: 64.3126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038096.1	Lag0038096.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
molecular_function	GO:0005504	fatty acid binding