Lag0038093 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038093
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF2647 domain-containing protein
Location	chr2: 12514586 .. 12516016 (-)
RNA-Seq Expression	Lag0038093
Synteny	Lag0038093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAATGAAGAAGGAGAGCAAGAACACACAGATGTAAAGTGGTTCGGCAACAAGGCCTACGTCCACTGTGATGAAGGGAGGTACCAGTCTTATTTCAGAATTATAGAGAATTACAACAAACACTCACACTGAAATTTCTTTAACTCTCTTACCTTTTTTTTTTTTTTATGCCTGAGAGATTTACATATTTATAATGCAGTTCCCTACCTGCTTCAGGTGAACTTTTTCCAAGGGACTTTGAAGATGGCAACCGGATAAACAGGTAATTTCAACAGGCTCGATTTTCTATTTTAAAGCAAATTCCTCCATATCCTACATGCACAAAAATATATGTCGATAGCATGTTGTGCAAGTCATAATTTTATCAAATTGCATGATAGTCATGATGAACTTTTTAGTGAGTATACTCAGAATTGATGATTATTGAAGAAGACAATATGCAAGATGGAAGCGACCTTTCACAGACCCCTACTGAGGTAAATGTGAGCCAAAATCAATTGAAGCATATGGCTCAAGTGAGGGATCGAATTGCTGATTGACTTTGGATGGCAACTCAAGCACGAAGTTGATTCTTGTCTTTTCTAATTTTGTTATTTTCACTTTTATAAACTCATTAGTATTGTTAAACATTATGGACATCTTTATTGTGTATTCTAATATGTTTATTATTATTACTATTATTATTATTATTTTCATTAGTAACCAAATACATTTAAAACATCGATATTATTTTACCAACATGCAATTTTTTTTGTAAAATTATAAACAACAATATAATTTTTATAATTACAGTATATATGAGATGAAAAATTTTTGTAAAAAAATATAGAAATAAAAAAAATCATCAATTGTTCTTTTGTTTTTTTAAATATAATTATCAAACCCGATTATTGTTTTATATTTAAAAAAAAAAACAGAAAATCAAAACATAGTTATCAAACATGTTTTTGGTTTTTAGTTTTTTAAAAACAGAAAACCAAAAACAGTTATCAAACATGTTTTGTTTTTGTTTTTTAAAAACAGAAAACCAAAAACCAAAAACTGAAATAGTTATCAAACGAGACCTTAGTTTTCTATAAATATATGTCATGTTTTCTCACTTCGATTCATATAACAAATTTGAAGCATTTGCTTTTTGCAAGTTCCTCTCTTGTTTCTACTTTTTGTTTTCTTTTCCTTTTTTTTTTTTTTTTGTTATAGAAATGTTACGTTGTTTTACCAGTTACCAGTGATGGTCAATTATTTGTTGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGAGCGGTCTGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAA

mRNA sequence

ATGAAGAACAATGAAGAAGGAGAGCAAGAACACACAGATGTAAAGTGGTTCGGCAACAAGGCCTACGTCCACTGTGATGAAGGGAGTTCCCTACCTGCTTCAGGTGAACTTTTTCCAAGGGACTTTGAAGATGGCAACCGGATAAACAGTGATGGTCAATTATTTGTTGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGAGCGGTCTGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAA

Coding sequence (CDS)

ATGAAGAACAATGAAGAAGGAGAGCAAGAACACACAGATGTAAAGTGGTTCGGCAACAAGGCCTACGTCCACTGTGATGAAGGGAGTTCCCTACCTGCTTCAGGTGAACTTTTTCCAAGGGACTTTGAAGATGGCAACCGGATAAACAGTGATGGTCAATTATTTGTTGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGAGCGGTCTGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAA

Protein sequence

MKNNEEGEQEHTDVKWFGNKAYVHCDEGSSLPASGELFPRDFEDGNRINSDGQLFVGAIQVRSNVDPTFYSLVGSERSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK

Homology

[Close]

BLAST of Lag0038093 vs. NCBI nr
Match: YP_009865163.1 (hypothetical protein RF68 [Alchemilla argyrophylla] >YP_009865250.1 hypothetical protein RF68 [Alchemilla pedata] >QKE47234.1 hypothetical protein RF68 [Alchemilla argyrophylla] >QKE47321.1 hypothetical protein RF68 [Alchemilla pedata])

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-22
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 115
           GAIQVRSNVDPTFYSLVGS RSGGDH GSSLLENPYIPYQYMDSYLSSTGLGSASMGK
Sbjct: 17  GAIQVRSNVDPTFYSLVGSGRSGGDHHGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 74

[Close]

BLAST of Lag0038093 vs. NCBI nr
Match: QTW91834.1 (hypothetical protein RF68 [Quercus saravanensis])

HSP 1 Score: 114.8 bits (286), Expect = 5.0e-22
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 115
           GAIQVRSNVDPTFYS+VGS RSGGDH GSSLLENPYIPYQYMDSYLSSTGLGSASMGK
Sbjct: 17  GAIQVRSNVDPTFYSIVGSGRSGGDHHGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 74

[Close]

BLAST of Lag0038093 vs. NCBI nr
Match: KAF8376866.1 (hypothetical protein HHK36_031466 [Tetracentron sinense])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 115
           GAIQVRSNVDPTFYSLVGS RSGGDH GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 53  GAIQVRSNVDPTFYSLVGSGRSGGDHYGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 110

[Close]

BLAST of Lag0038093 vs. NCBI nr
Match: QVD38994.1 (hypothetical protein RF68 [Morus alba var. multicaulis] >QVD39079.1 hypothetical protein RF68 [Morus alba var. atropurpurea])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 115
           GAIQVRSNVDPTFYSLVGS RSG DH GSSLLENPYIPYQYMDSYLSSTGLGSASMGK
Sbjct: 17  GAIQVRSNVDPTFYSLVGSGRSGRDHHGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 74

[Close]

BLAST of Lag0038093 vs. NCBI nr
Match: QVD40841.1 (hypothetical protein RF68 [Potentilla sischanensis])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 115
           GAIQVRSNVDPTFYSLVGS RSG DH GSSLLENPYIPYQYMDSYLSSTGLGSASMGK
Sbjct: 17  GAIQVRSNVDPTFYSLVGSGRSGRDHHGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 74

[Close]

BLAST of Lag0038093 vs. ExPASy Swiss-Prot
Match: Q49KT9 (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-23
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGDHLGSSLLENPYIPYQYMDSYLSSTGLGSASMGK 115
           GAIQVRSNVDPTFYSLVGS RSGGD  GSSLLENPYIPYQ MDSYLSSTGLGSASMGK
Sbjct: 56  GAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPYQCMDSYLSSTGLGSASMGK 113

[Close]

BLAST of Lag0038093 vs. ExPASy Swiss-Prot
Match: Q85WV9 (Uncharacterized protein ycf68 OS=Pinus koraiensis OX=88728 GN=ycf68 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 38/53 (71.70%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGD---HLGSSLLENPYIPYQYMDSYLSSTG 107
           GAIQVRSN DPTFYS V     GG    H GSSLLENPYIPYQ MD YLS TG
Sbjct: 23  GAIQVRSNADPTFYSFVDLGGPGGPVVIHHGSSLLENPYIPYQCMDGYLSGTG 75

[Close]

BLAST of Lag0038093 vs. ExPASy Swiss-Prot
Match: P52807 (Uncharacterized protein ycf68 OS=Pinus thunbergii OX=3350 GN=ycf68 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-12
Identity = 38/53 (71.70%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 57  GAIQVRSNVDPTFYSLVGSERSGGD---HLGSSLLENPYIPYQYMDSYLSSTG 107
           GAIQVRSN DPTFYS V     G     HLGSSLLENPYIPYQ MD YLS TG
Sbjct: 23  GAIQVRSNTDPTFYSFVDLGGPGVPVVIHLGSSLLENPYIPYQCMDGYLSGTG 75

The following BLAST results are available for this feature:

BLAST of Lag0038093 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009865163.1	2.9e-22	96.55	hypothetical protein RF68 [Alchemilla argyrophylla] >YP_009865250.1 hypothetical...	[more]
QTW91834.1	5.0e-22	94.83	hypothetical protein RF68 [Quercus saravanensis]	[more]
KAF8376866.1	1.9e-21	94.83	hypothetical protein HHK36_031466 [Tetracentron sinense]	[more]
QVD38994.1	2.5e-21	94.83	hypothetical protein RF68 [Morus alba var. multicaulis] >QVD39079.1 hypothetical...	[more]
QVD40841.1	2.5e-21	94.83	hypothetical protein RF68 [Potentilla sischanensis]	[more]

BLAST of Lag0038093 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KT9	6.1e-23	93.10	Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus OX=71271 GN...	[more]
Q85WV9	1.7e-12	71.70	Uncharacterized protein ycf68 OS=Pinus koraiensis OX=88728 GN=ycf68 PE=3 SV=1	[more]
P52807	2.8e-12	71.70	Uncharacterized protein ycf68 OS=Pinus thunbergii OX=3350 GN=ycf68 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022546	Uncharacterised protein family Ycf68	PFAM	PF10839	DUF2647	coord: 57..81 e-value: 2.1E-10 score: 40.5
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 51..114
None	No IPR available	PANTHER	PTHR34890:SF7	BNAUNNG00850D PROTEIN	coord: 51..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038093.1	Lag0038093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast