Lag0038088 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038088
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 12437615 .. 12438541 (-)
RNA-Seq Expression	Lag0038088
Synteny	Lag0038088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCATCGCCATTGCTCTGATTTCTTACTCTTACTATGTAGCTTCCAAGATCCCCAAGGGACTCCCAAGGCTCCTCGCTCTCTTCCCCGTTCTCTTCATCTTCCTCCTCCTTCCTCTGACTCTCCACTCCTTCCATCTCTGCGGTCCGACTGCTTTCTTCCTCGCTTGGCTCGGCAATTTCAAGCTCCTCCTCTTCGCCTTCGATCTCGGTCCTCTGATCTCCTCGCCGCTCCCGAGCTTCCTCCGCTTCGCCGCCGTGCTCTGCCTTCCAGTCAAGATCCAGAAGCACAAATCTCCAGAAGAATCGAAGAATCGGAGAGTCGGAGAGCCGATCATTCTCGCCGTGAAGGTTTTACTTCTTGCGATGGTCGTTCGGCTCTACGAGTACCGAAATCGGATGGATCCGGCGGTCGTTTTCGTCCTGTATTGCCTCCATATGTACATCGGCGTCGAAATCGTCCTCGCTCTGTTTTCTCTCCCGGCGAGGGCGATCATCGGAGCTCCGATCGAGCCGCAGTTCGACGAGCCCTATCTCTCCACCTCGCTTCAGGATTTCTGGAGCCGTCGATGGAATCTCATGGTCCCGAGTATTCTACGCCCGACCGTATACGATCCGACTCGTCTCATAACTTCCCGCTTCTTTGGGCCGAGGTGGGCCCAACTTCTGGCCATGGTGGCTACGTTTGCCGTCTCTGGCTTTATGCACGAGCTGATATATTATTACTTCACACGTGCCGCTCCCACGTGGGAGGTCACGTGGTTCTTCGTCCTGCACGGCGTGTGTACGGCGGCGGAGGTGGCGGCGAAGGCCGCTTTGGCCGGTCGGAAGGTGCGGTGGCGGATCCACCGGCTGGTGTCTGGGTTGATGACTTTGGTGTTTTTGATGGTGACGGCGAAGTGGCTGATGTTCCCTCAACTAATTAG

mRNA sequence

ATGGTCCATCGCCATTGCTCTGATTTCTTACTCTTACTATGTAGCTTCCAAGATCCCCAAGGGACTCCCAAGGCTCCTCGCTCTCTTCCCCGTTCTCTTCATCTTCCTCCTCCTTCCTCTGACTCTCCACTCCTTCCATCTCTGCGGTCCGACTGCTTTCTTCCTCGCTTGGCTCGGCAATTTCAAGCTCCTCCTCTTCGCCTTCGATCTCGGTCCTCTGATCTCCTCGCCGCTCCCGAGCTTCCTCCGCTTCGCCGCCGTGCTCTGCCTTCCAGTCAAGATCCAGAAGCACAAATCTCCAGAAGAATCGAAGAATCGGAGAGTCGGAGAGCCGATCATTCTCGCCGTGAAGGTTTTACTTCTTGCGATGGTCGTTCGGCTCTACGAGTACCGAAATCGGATGGATCCGGCGGTCGTTTTCGTCCTGTATTGCCTCCATATGTACATCGGCGTCGAAATCGTCCTCGCTCTGTTTTCTCTCCCGGCGAGGGCGATCATCGGAGCTCCGATCGAGCCGCAGTTCGACGAGCCCTATCTCTCCACCTCGCTTCAGGATTTCTGGAGCCGTCGATGGAATCTCATGGTCCCGAGTATTCTACGCCCGACCGTATACGATCCGACTCGTCTCATAACTTCCCGCTTCTTTGGGCCGAGGTGGGCCCAACTTCTGGCCATGGTGGCTACGTTTGCCGTCTCTGGCTTTATGCACGAGCTGATATATTATTACTTCACACGTGCCGCTCCCACGTGGGAGGTCACGTGGTTCTTCGTCCTGCACGGCGTGTGTACGGCGGCGGAGGTGGCGGCGAAGGCCGCTTTGGCCGGTCGGAAGGTGCGGTGGCGGATCCACCGGCTGGTGTCTGGGTTGATGACTTTGGTGTTTTTGATGGTGACGGCGAAGTGGCTGATGTTCCCTCAACTAATTAG

Coding sequence (CDS)

ATGGTCCATCGCCATTGCTCTGATTTCTTACTCTTACTATGTAGCTTCCAAGATCCCCAAGGGACTCCCAAGGCTCCTCGCTCTCTTCCCCGTTCTCTTCATCTTCCTCCTCCTTCCTCTGACTCTCCACTCCTTCCATCTCTGCGGTCCGACTGCTTTCTTCCTCGCTTGGCTCGGCAATTTCAAGCTCCTCCTCTTCGCCTTCGATCTCGGTCCTCTGATCTCCTCGCCGCTCCCGAGCTTCCTCCGCTTCGCCGCCGTGCTCTGCCTTCCAGTCAAGATCCAGAAGCACAAATCTCCAGAAGAATCGAAGAATCGGAGAGTCGGAGAGCCGATCATTCTCGCCGTGAAGGTTTTACTTCTTGCGATGGTCGTTCGGCTCTACGAGTACCGAAATCGGATGGATCCGGCGGTCGTTTTCGTCCTGTATTGCCTCCATATGTACATCGGCGTCGAAATCGTCCTCGCTCTGTTTTCTCTCCCGGCGAGGGCGATCATCGGAGCTCCGATCGAGCCGCAGTTCGACGAGCCCTATCTCTCCACCTCGCTTCAGGATTTCTGGAGCCGTCGATGGAATCTCATGGTCCCGAGTATTCTACGCCCGACCGTATACGATCCGACTCGTCTCATAACTTCCCGCTTCTTTGGGCCGAGGTGGGCCCAACTTCTGGCCATGGTGGCTACGTTTGCCGTCTCTGGCTTTATGCACGAGCTGATATATTATTACTTCACACGTGCCGCTCCCACGTGGGAGGTCACGTGGTTCTTCGTCCTGCACGGCGTGTGTACGGCGGCGGAGGTGGCGGCGAAGGCCGCTTTGGCCGGTCGGAAGGTGCGGTGGCGGATCCACCGGCTGGTGTCTGGGTTGATGACTTTGGTGTTTTTGATGGTGACGGCGAAGTGGCTGATGTTCCCTCAACTAATTAG

Protein sequence

MVHRHCSDFLLLLCSFQDPQGTPKAPRSLPRSLHLPPPSSDSPLLPSLRSDCFLPRLARQFQAPPLRLRSRSSDLLAAPELPPLRRRALPSSQDPEAQISRRIEESESRRADHSRREGFTSCDGRSALRVPKSDGSGGRFRPVLPPYVHRRRNRPRSVFSPGEGDHRSSDRAAVRRALSLHLASGFLEPSMESHGPEYSTPDRIRSDSSHNFPLLWAEVGPTSGHGGYVCRLWLYARADILLLHTCRSHVGGHVVLRPARRVYGGGGGGEGRFGRSEGAVADPPAGVWVDDFGVFDGDGEVADVPSTN

Homology

[Close]

BLAST of Lag0038088 vs. NCBI nr
Match: RLM73548.1 (hypothetical protein C2845_PM15G12080 [Panicum miliaceum])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-10
Identity = 98/298 (32.89%), Postives = 125/298 (41.95%), Query Frame = 0


Query: 23  PKAPRSLPRSLHLPPPS-SDSPLLPSLRSDCFLPRLARQFQAPPLRLRSRSSDLLAAPEL 82
           P  PR  P     PPP+ +  P  P  R    LPRL R+ QAP  RLR+       AP +
Sbjct: 88  PAPPRRAPPGGRRPPPAPARVPRAPPARHLRLLPRLGRRVQAPAPRLRAG-----PAPPV 147

Query: 83  PP---LRRRALPSSQDPEAQISRRIEESESRRADHSRREGFTSCDGRSALRVPKSDGSGG 142
           PP   LRRR          Q  RR  E+   RA   RR G  +C  R+A+    +D    
Sbjct: 148 PPAADLRRRRHAPCHGAGPQ-GRRGREAPGPRARRVRRHGRAACGDRAAVPARGAD---- 207

Query: 143 RFRPVLPPYVHRRRNRPRSVFSPGEGDHRSS------DRAAVRRALSLHLASGFLEPSME 202
              PV PP    R + PR+   PG G  R +        AAVR AL L +A+G L P++E
Sbjct: 208 --EPVRPPRALLRAHVPRAGARPGGGRGRGARDAGPGAGAAVRPALPLGVAAGLLGPAVE 267

Query: 203 ----SHGPEYSTPDRIRSDSSHNFPLLWAEVGPTSGHGGYVCRLWLYARADILLLHTCRS 262
                  P    P R R           A   P  G GG + R+   AR  +L+ H   +
Sbjct: 268 PLRAGAAPAVRVPPRAR-----------APRRPRGGAGG-LRRVRPDARGHVLVPHAAPA 327

Query: 263 HVGGHVVLRPARRVYGGGGGGEGRFGRSEGAVADPPAGVWVDDFGVFDGDGEVADVPS 307
           H GG  +LR AR V G G    G  GR+       P        GV    G +A +P+
Sbjct: 328 HGGGGGLLRAARGVRGSG----GVVGRARAVATPAPRAGHAAHAGVRRRHGVLALLPA 357

[Close]

BLAST of Lag0038088 vs. NCBI nr
Match: CAB4298622.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-10
Identity = 50/125 (40.00%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 142 PVLPPYVHRRRNRPRSVFSPGEGDHRSSDRAAVRRALSLHLASGFLEPSMESHGPEYSTP 201
           P L  ++   RN      SP  G      + A +RAL LHL++  L   ME  G +Y TP
Sbjct: 153 PSLLVHIPSSRNPTHHCSSPRLGPSGFRSQTAFQRALPLHLSAKLLGQKMEPRGHQYPTP 212

Query: 202 DRIRSDSSHNFPLLWAEVGPTSGHGGYVCRLWLYARADILLLHTCRSHVGGHVVLRPARR 261
            RIR+         W +VG T+     +  L  YARA ILL  +C +HVGGHVVLR AR 
Sbjct: 213 VRIRTHPQFLHVRHWPQVGLTTRCLCKLPCLRAYARAHILLHGSCEAHVGGHVVLRFARV 272

Query: 262 VYGGG 267
           ++ GG
Sbjct: 273 LFDGG 277

[Close]

BLAST of Lag0038088 vs. NCBI nr
Match: CAB4268229.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-08
Identity = 54/142 (38.03%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 142 PVLPPYVHRRRNRPRSVFSPGEGDHRSSDRAAVRRALSLHLASGFLEPSMESHGPEYSTP 201
           P L  ++   RN      SP  G      + A +RAL LHL++  L   ME  G +Y TP
Sbjct: 21  PSLLVHIPSSRNPTHHCSSPRLGPSGFRSQTAFQRALPLHLSAKLLGQKMEPRGHQYPTP 80

Query: 202 DRIRSDSSHNFPLLWAEVGPTSGHGGYVCRLWLYARADILLLHTCRSHVGGHVVLRPARR 261
            RIR+         W +VG T+     +  L  YARA +LL  +C +HVGGHVVLR AR 
Sbjct: 81  VRIRTHPQFLHVRHWPQVGFTTRCLCKLPCLRAYARAHLLLHGSCEAHVGGHVVLRFARV 140

Query: 262 VYG-GGGGGEGRFGRSEGAVAD 283
           ++  G    EG  G+   A AD
Sbjct: 141 LFDVGDRFEEGIEGQLSVAEAD 162

[Close]

BLAST of Lag0038088 vs. ExPASy TrEMBL
Match: A0A3L6Q6S9 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G12080 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-11
Identity = 98/298 (32.89%), Postives = 125/298 (41.95%), Query Frame = 0


Query: 23  PKAPRSLPRSLHLPPPS-SDSPLLPSLRSDCFLPRLARQFQAPPLRLRSRSSDLLAAPEL 82
           P  PR  P     PPP+ +  P  P  R    LPRL R+ QAP  RLR+       AP +
Sbjct: 88  PAPPRRAPPGGRRPPPAPARVPRAPPARHLRLLPRLGRRVQAPAPRLRAG-----PAPPV 147

Query: 83  PP---LRRRALPSSQDPEAQISRRIEESESRRADHSRREGFTSCDGRSALRVPKSDGSGG 142
           PP   LRRR          Q  RR  E+   RA   RR G  +C  R+A+    +D    
Sbjct: 148 PPAADLRRRRHAPCHGAGPQ-GRRGREAPGPRARRVRRHGRAACGDRAAVPARGAD---- 207

Query: 143 RFRPVLPPYVHRRRNRPRSVFSPGEGDHRSS------DRAAVRRALSLHLASGFLEPSME 202
              PV PP    R + PR+   PG G  R +        AAVR AL L +A+G L P++E
Sbjct: 208 --EPVRPPRALLRAHVPRAGARPGGGRGRGARDAGPGAGAAVRPALPLGVAAGLLGPAVE 267

Query: 203 ----SHGPEYSTPDRIRSDSSHNFPLLWAEVGPTSGHGGYVCRLWLYARADILLLHTCRS 262
                  P    P R R           A   P  G GG + R+   AR  +L+ H   +
Sbjct: 268 PLRAGAAPAVRVPPRAR-----------APRRPRGGAGG-LRRVRPDARGHVLVPHAAPA 327

Query: 263 HVGGHVVLRPARRVYGGGGGGEGRFGRSEGAVADPPAGVWVDDFGVFDGDGEVADVPS 307
           H GG  +LR AR V G G    G  GR+       P        GV    G +A +P+
Sbjct: 328 HGGGGGLLRAARGVRGSG----GVVGRARAVATPAPRAGHAAHAGVRRRHGVLALLPA 357

[Close]

BLAST of Lag0038088 vs. ExPASy TrEMBL
Match: A0A6J5WG60 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS11178 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 50/125 (40.00%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 142 PVLPPYVHRRRNRPRSVFSPGEGDHRSSDRAAVRRALSLHLASGFLEPSMESHGPEYSTP 201
           P L  ++   RN      SP  G      + A +RAL LHL++  L   ME  G +Y TP
Sbjct: 153 PSLLVHIPSSRNPTHHCSSPRLGPSGFRSQTAFQRALPLHLSAKLLGQKMEPRGHQYPTP 212

Query: 202 DRIRSDSSHNFPLLWAEVGPTSGHGGYVCRLWLYARADILLLHTCRSHVGGHVVLRPARR 261
            RIR+         W +VG T+     +  L  YARA ILL  +C +HVGGHVVLR AR 
Sbjct: 213 VRIRTHPQFLHVRHWPQVGLTTRCLCKLPCLRAYARAHILLHGSCEAHVGGHVVLRFARV 272

Query: 262 VYGGG 267
           ++ GG
Sbjct: 273 LFDGG 277

[Close]

BLAST of Lag0038088 vs. ExPASy TrEMBL
Match: A0A6J5TWU3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS11413 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 54/142 (38.03%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 142 PVLPPYVHRRRNRPRSVFSPGEGDHRSSDRAAVRRALSLHLASGFLEPSMESHGPEYSTP 201
           P L  ++   RN      SP  G      + A +RAL LHL++  L   ME  G +Y TP
Sbjct: 21  PSLLVHIPSSRNPTHHCSSPRLGPSGFRSQTAFQRALPLHLSAKLLGQKMEPRGHQYPTP 80

Query: 202 DRIRSDSSHNFPLLWAEVGPTSGHGGYVCRLWLYARADILLLHTCRSHVGGHVVLRPARR 261
            RIR+         W +VG T+     +  L  YARA +LL  +C +HVGGHVVLR AR 
Sbjct: 81  VRIRTHPQFLHVRHWPQVGFTTRCLCKLPCLRAYARAHLLLHGSCEAHVGGHVVLRFARV 140

Query: 262 VYG-GGGGGEGRFGRSEGAVAD 283
           ++  G    EG  G+   A AD
Sbjct: 141 LFDVGDRFEEGIEGQLSVAEAD 162

The following BLAST results are available for this feature:

BLAST of Lag0038088 vs. NCBI nr


Match Name	E-value	Identity	Description
RLM73548.1	1.1e-10	32.89	hypothetical protein C2845_PM15G12080 [Panicum miliaceum]	[more]
CAB4298622.1	3.1e-10	40.00	unnamed protein product [Prunus armeniaca]	[more]
CAB4268229.1	2.9e-08	38.03	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lag0038088 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3L6Q6S9	5.2e-11	32.89	Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G12080 PE=4 SV...	[more]
A0A6J5WG60	1.5e-10	40.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS11178 PE=...	[more]
A0A6J5TWU3	1.4e-08	38.03	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS11413 PE=4 S...	[more]

BLAST of Lag0038088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038088.1	Lag0038088.1	mRNA