Lag0038081 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038081
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NAC domain-containing protein
Location	chr2: 12359449 .. 12360240 (+)
RNA-Seq Expression	Lag0038081
Synteny	Lag0038081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCAAACATGCTTCCACTCGGCTATACTTTCTCTCCCACCGATGAAGAACTACTTAACTACTTTCTTTACCACAAGATTGTTGAAAATTTCGATCCTCCTCTTGTGGTACCAGTGATTGATCTTTACAGCCAAGAACCTTCTATGATATGGCAACAATTTGGAGGGATTGATGGTCGAGACTTGCATTTTTTGACCCAACTTAAGAAGAAGAAACCTCGTATTATCAGAAAAGTCGGCTCTAATGGTGGTACTTGGAGTGGTGAAAACAAGGCGACTAAAGTATTCACTCCTACTAACAATGCCTTAGTTGGTAGTTTCAAGCGTTTTCATTACGAGAATCCTAAACTCAAAGTGAAGGATGAAGATTATTCTTGGATCATGTATGAGTGAGTACACTCTTGATCCCACTCCTACGTACTCTGCAAGATTCGGAAAAGGATTGTGAAAAGTGAAAAAAGAAGGGCAGTTTCATCAATGGAAACGTTTGCTTGTTGGCCACCAGCACAACTACGTGATCAAATTCCCAATTGTAGAAAATTGGTAGACAATTTTGTAAATTTGAATTTGTTGTCCATTAACAATGTCCATAAACACAATTTTAATTTTGCTTATAGTCCAACAGCACAAATGGAATCCCATCTTAACAATTTAGATGATGAAATGTTTGTAAAAGAAATCGAGAGGGAACTTGAACAATCCAACAATATGGAAATTGGTGGTACAAAAGAAGACTCAAGTTATGGCAATGAATGGTATTGGAGTGTTCAGCAAACTACTTCGTCATAG

mRNA sequence

ATGAATCCAAACATGCTTCCACTCGGCTATACTTTCTCTCCCACCGATGAAGAACTACTTAACTACTTTCTTTACCACAAGATTGTTGAAAATTTCGATCCTCCTCTTGTGGTACCAGTGATTGATCTTTACAGCCAAGAACCTTCTATGATATGGCAACAATTTGGAGGGATTGATGGTCGAGACTTGCATTTTTTGACCCAACTTAAGAAGAAGAAACCTCGTATTATCAGAAAAGTCGGCTCTAATGGTGGTACTTGGAGTGGTGAAAACAAGGCGACTAAAGTATTCACTCCTACTAACAATGCCTTAGTTGGTAGTTTCAAGCGTTTTCATTACGAGAATCCTAAACTCAAAGTGAAGGATGAAGATTATTCTTGGATCATGTATGATCCAACAGCACAAATGGAATCCCATCTTAACAATTTAGATGATGAAATGTTTGTAAAAGAAATCGAGAGGGAACTTGAACAATCCAACAATATGGAAATTGGTGGTACAAAAGAAGACTCAAGTTATGGCAATGAATGGTATTGGAGTGTTCAGCAAACTACTTCGTCATAG

Coding sequence (CDS)

ATGAATCCAAACATGCTTCCACTCGGCTATACTTTCTCTCCCACCGATGAAGAACTACTTAACTACTTTCTTTACCACAAGATTGTTGAAAATTTCGATCCTCCTCTTGTGGTACCAGTGATTGATCTTTACAGCCAAGAACCTTCTATGATATGGCAACAATTTGGAGGGATTGATGGTCGAGACTTGCATTTTTTGACCCAACTTAAGAAGAAGAAACCTCGTATTATCAGAAAAGTCGGCTCTAATGGTGGTACTTGGAGTGGTGAAAACAAGGCGACTAAAGTATTCACTCCTACTAACAATGCCTTAGTTGGTAGTTTCAAGCGTTTTCATTACGAGAATCCTAAACTCAAAGTGAAGGATGAAGATTATTCTTGGATCATGTATGATCCAACAGCACAAATGGAATCCCATCTTAACAATTTAGATGATGAAATGTTTGTAAAAGAAATCGAGAGGGAACTTGAACAATCCAACAATATGGAAATTGGTGGTACAAAAGAAGACTCAAGTTATGGCAATGAATGGTATTGGAGTGTTCAGCAAACTACTTCGTCATAG

Protein sequence

MNPNMLPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQQFGGIDGRDLHFLTQLKKKKPRIIRKVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKLKVKDEDYSWIMYDPTAQMESHLNNLDDEMFVKEIERELEQSNNMEIGGTKEDSSYGNEWYWSVQQTTSS

Homology

[Close]

BLAST of Lag0038081 vs. NCBI nr
Match: XP_038880323.1 (NAC domain-containing protein 96-like [Benincasa hispida])

HSP 1 Score: 201.1 bits (510), Expect = 8.7e-48
Identity = 90/133 (67.67%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MNPNMLPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQQFGGIDG 60
           +NP+MLP+G+TFSPTDEELL+++L+HKIV +F PP+V+ VIDLY++EPS IWQ+ GGIDG
Sbjct: 2   INPSMLPIGFTFSPTDEELLSFYLFHKIVGDFIPPIVLQVIDLYNEEPSQIWQRCGGIDG 61

Query: 61  RDLHFLTQLKKKKPRIIRKVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKLKV 120
           +D++F T LKKKK R+IRKVGSNG TWSGENKA  VF+  NNAL+GS KRFHYEN K+K+
Sbjct: 62  QDIYFFTNLKKKKSRVIRKVGSNGATWSGENKANMVFSSINNALIGSVKRFHYENSKVKL 121

Query: 121 KDEDYSWIMYDPT 134
            D ++SWIMY+ T
Sbjct: 122 ND-NHSWIMYEYT 133

[Close]

BLAST of Lag0038081 vs. NCBI nr
Match: KAA0057812.1 (NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-45
Identity = 91/138 (65.94%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 1   MNPNMLPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQQFGGIDG 60
           MNP++LP+GYTF PTDEELL ++LYHKI+ +F PP+++PVID+Y+QEP  IW+Q GG++G
Sbjct: 1   MNPSLLPVGYTFCPTDEELLTFYLYHKIMGDFIPPIMLPVIDIYTQEPPQIWEQCGGVEG 60

Query: 61  RDLHFLTQLKKKKPRIIRKVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKL-K 120
           RD+HF T LKK+K RIIRKVGSNG  WSGE+KATKVF+  +N LVG+FKRFHYEN K+ K
Sbjct: 61  RDVHFFTTLKKRKSRIIRKVGSNGAMWSGESKATKVFS-HDNTLVGTFKRFHYENSKMTK 120

Query: 121 VKD--EDYSWIMYDPTAQ 136
           V D    YSWIMY+ T Q
Sbjct: 121 VDDCNNIYSWIMYEYTLQ 137

[Close]

BLAST of Lag0038081 vs. NCBI nr
Match: TYJ98496.1 (NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-45
Identity = 91/138 (65.94%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 1   MNPNMLPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQQFGGIDG 60
           MNP++LP+GYTF PTDEELL ++LYHKI+ +F PP+++PVID+Y+QEP  IW+Q GG++G
Sbjct: 1   MNPSLLPVGYTFCPTDEELLTFYLYHKIMGDFIPPIMLPVIDIYTQEPPQIWEQCGGVEG 60

Query: 61  RDLHFLTQLKKKKPRIIRKVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKL-K 120
           RD+HF T LKK+K RIIRKVGSNG  WSGE+KATKVF+  +N LVG+FKRFHYEN K+ K
Sbjct: 61  RDVHFFTTLKKRKSRIIRKVGSNGAMWSGESKATKVFS-HDNTLVGTFKRFHYENSKMTK 120

Query: 121 VKD--EDYSWIMYDPTAQ 136
           V D    YSWIMY+ T Q
Sbjct: 121 VDDCNNIYSWIMYEYTLQ 137

[Close]

BLAST of Lag0038081 vs. NCBI nr
Match: XP_031742243.1 (NAC transcription factor 29-like [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-45
Identity = 88/136 (64.71%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MNPNMLPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQQFGGIDG 60
           MN +MLP+GYTF PTDEELL Y+LYHK+V  F PP+++ V+D+Y++EP  IWQQ GG+DG
Sbjct: 1   MNTSMLPMGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDG 60

Query: 61  RDLHFLTQLKKKKPRIIRKVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKLKV 120
           +D+HF T LKKKK R++RKVG NG TWSGE+KATKVF+  NN LVG FKRFHYENPK+K 
Sbjct: 61  QDVHFFTCLKKKKSRVVRKVGPNGATWSGESKATKVFS-HNNTLVGDFKRFHYENPKMKK 120

Query: 121 ---KDEDYSWIMYDPT 134
               + +YSWIMY+ T
Sbjct: 121 GGHHNNNYSWIMYEYT 135

[Close]

BLAST of Lag0038081 vs. NCBI nr
Match: KAE8653009.1 (hypothetical protein Csa_004551 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 83/129 (64.34%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 8   LGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQQFGGIDGRDLHFLT 67
           +GYTF PTDEELL Y+LYHK+V  F PP+++ V+D+Y++EP  IWQQ GG+DG+D+HF T
Sbjct: 1   MGYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFT 60

Query: 68  QLKKKKPRIIRKVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKLKV---KDED 127
            LKKKK R++RKVG NG TWSGE+KATKVF+  NN LVG FKRFHYENPK+K     + +
Sbjct: 61  CLKKKKSRVVRKVGPNGATWSGESKATKVFS-HNNTLVGDFKRFHYENPKMKKGGHHNNN 120

Query: 128 YSWIMYDPT 134
           YSWIMY+ T
Sbjct: 121 YSWIMYEYT 128

[Close]

BLAST of Lag0038081 vs. ExPASy Swiss-Prot
Match: Q9LS24 (NAC domain-containing protein 96 OS=Arabidopsis thaliana OX=3702 GN=NAC096 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 1   MNPNMLPLGYTFSPTDEELLNYFLYHKIVENFDPPL-VVPVIDLYSQEPSMIWQ--QFGG 60
           M  + LP G+ F PTDEEL+ Y+L  K VE  +  L V+PVIDLYS +P   W+      
Sbjct: 1   MGSSCLPPGFRFHPTDEELIEYYLKRK-VEGLEIELEVIPVIDLYSFDP---WELPDKSF 60

Query: 61  IDGRDL--HFLTQLKKKKPRIIR-KVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYE 120
           +  RD+  +F     KK P   R   G+  G W    K  K+ T  +++++G  K   + 
Sbjct: 61  LPNRDMEWYFFCSRDKKYPNGFRTNRGTKAGYWKATGKDRKI-TSRSSSIIGYRKTLVFY 120

Query: 121 NPKLKVKDEDYSWIMYD 132
             +  + D   +WIM++
Sbjct: 121 KGRAPLGDRS-NWIMHE 131

[Close]

BLAST of Lag0038081 vs. ExPASy Swiss-Prot
Match: O04017 (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-07
Identity = 36/129 (27.91%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 6   LPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQQFG--GIDGRDL 65
           LP G+ F PTDEEL+ ++L  K+++       +  +DL   EP   WQ  G   +  ++ 
Sbjct: 17  LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEP---WQLPGRAKMGEKEW 76

Query: 66  HFLTQLKKKKPRIIR-KVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKLKVKD 125
           +F +   +K P  +R    +  G W    K  ++F+    ALVG  K   +   +   K 
Sbjct: 77  YFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAP-KG 136

Query: 126 EDYSWIMYD 132
           E  +W+M++
Sbjct: 137 EKSNWVMHE 141

[Close]

BLAST of Lag0038081 vs. ExPASy Swiss-Prot
Match: K4BNG7 (NAC domain-containing protein 2 OS=Solanum lycopersicum OX=4081 GN=NAP2 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 36/136 (26.47%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 2   NPNMLPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQ-----QFG 61
           N N LP G+ F PTDEEL+ Y+L ++      P  ++P +D+Y  +P   W+     +FG
Sbjct: 6   NSNHLPPGFRFHPTDEELIMYYLRNQATSKPCPSSIIPEVDVYKFDP---WELPEKTEFG 65

Query: 62  GIDGRDLHFLTQLKKKKPRIIR-KVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYEN 121
               ++ +F T   +K P  +R    +  G W        +++ T    +     F+   
Sbjct: 66  ---EKEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKGIYSGTKYVGIKKALVFYKGK 125

Query: 122 PKLKVKDEDYSWIMYD 132
           P   +K +   WIM++
Sbjct: 126 PPKGIKTD---WIMHE 132

[Close]

BLAST of Lag0038081 vs. ExPASy Swiss-Prot
Match: Q9FRV4 (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana OX=3702 GN=NAC054 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-06
Identity = 32/131 (24.43%), Postives = 63/131 (48.09%), Query Frame = 0


Query: 4   NMLPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQ--QFGGIDGR 63
           +++P G+ F PTDEEL+ Y+L  K++++      +  +DL   EP   W+  +   +  +
Sbjct: 18  SLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEP---WELPEKAKMGEK 77

Query: 64  DLHFLTQLKKKKPRIIR-KVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKLKV 123
           + +F T   +K P  +R    +  G W    K  ++ +    +L+G  K   +   +   
Sbjct: 78  EWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAP- 137

Query: 124 KDEDYSWIMYD 132
           K E   W+M++
Sbjct: 138 KGEKSCWVMHE 144

[Close]

BLAST of Lag0038081 vs. ExPASy Swiss-Prot
Match: O49255 (NAC transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=NAC029 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.5e-06
Identity = 35/132 (26.52%), Postives = 63/132 (47.73%), Query Frame = 0


Query: 6   LPLGYTFSPTDEELLNYFLYHKIVENFDPPLVVPVIDLYSQEPSMIWQ-----QFGGIDG 65
           LP G+ F PTDEEL+ Y+L ++ +    P  ++P +D+Y  +P   WQ     +FG    
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDP---WQLPEKTEFG---E 68

Query: 66  RDLHFLTQLKKKKPRIIR-KVGSNGGTWSGENKATKVFTPTNNALVGSFKRFHYENPKLK 125
            + +F +  ++K P  +R    +  G W        + + ++N  V     F+   P   
Sbjct: 69  NEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKG 128

Query: 126 VKDEDYSWIMYD 132
           +K +   WIM++
Sbjct: 129 IKTD---WIMHE 131

The following BLAST results are available for this feature:

BLAST of Lag0038081 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880323.1	8.7e-48	67.67	NAC domain-containing protein 96-like [Benincasa hispida]	[more]
KAA0057812.1	1.4e-45	65.94	NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa]	[more]
TYJ98496.1	1.4e-45	65.94	NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa]	[more]
XP_031742243.1	1.8e-45	64.71	NAC transcription factor 29-like [Cucumis sativus]	[more]
KAE8653009.1	1.9e-42	64.34	hypothetical protein Csa_004551 [Cucumis sativus]	[more]

BLAST of Lag0038081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS24	4.8e-09	33.58	NAC domain-containing protein 96 OS=Arabidopsis thaliana OX=3702 GN=NAC096 PE=1 ...	[more]
O04017	5.9e-07	27.91	Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV...	[more]
K4BNG7	1.0e-06	26.47	NAC domain-containing protein 2 OS=Solanum lycopersicum OX=4081 GN=NAP2 PE=2 SV=...	[more]
Q9FRV4	3.8e-06	24.43	Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana OX=3702 GN=NAC054 PE=1 SV...	[more]
O49255	6.5e-06	26.52	NAC transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=NAC029 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 7..130 e-value: 1.1E-15 score: 58.7
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 6..155 score: 21.829027
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 15..161 e-value: 7.5E-16 score: 60.3
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 4..146
None	No IPR available	PANTHER	PTHR31989:SF371	SUBFAMILY NOT NAMED	coord: 4..149
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 4..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038081.1	Lag0038081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding