Lag0037941 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037941
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Trophinin
Location	chr2: 10849183 .. 10850990 (-)
RNA-Seq Expression	Lag0037941
Synteny	Lag0037941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGAGGAGCGGGAGAGCCGAAAGAGTTGTCGGGGCTGTCCACGATCATCGAAGTGTCGGGGCTGCACGTCCTGTGTGTGCTTTGGATGTCTCCGTTGCCGCTTCTTGGACTGCCATTGCCGTGCCTGCATCGATTTTGTGCAGAATGCAGCACCTTGAGCTTGTTCTGTGTATGAAACTCTAATGGCTTCTGATTGTTTCATGGAGCATCTAGTAGATGACATTGCAGATACTCAAATTGGATTGTGAAGTGATTGATGCAGCTTTTTTTTAATTCCAAAAAAAAAAAAACCAGCTTTAAGATTGGACATGTACTGTTTTTACAGTTAGCTGACAGCAAATTCTTTCCTTAATTGTATCCAACAGTATCAGTAGAGTAGATGATATTCACATGTTTGATTTAACAAGGCATGGAATAAAATTGGAGAAAAGAGGAAATTTCTTTCAATCTTGAAATTAAACTTCTTGAATTTTCTTTGTTTTGTTATTTACTTTCTATCAATATTAATTTGAATATTCCTTTAAGAAAAGTGAAAACATATGAAAGAAATCGGAAAGAAACAAACATAAGTTTCAAAAACAGAAAACTAAAAACAAACTCGTTAACCAACAAGACTCTTAAGTTTGCAAGAATTGAAAAGGTGTTTTTAAACATCTCTCTAGCCCTAACCACCACTGGGTCATACATTAATAATAATTAGAAAGTGCCGAAACAACGCAAGAAAAGTTTTCTAGGTTCTGATTTTCAGGAAAAAATTGAGTGTATATTACAGATACAAAATGTGTAGTAAAACTATGGATGCCTAAGAGTACAACTTTTTTCTTTGGAGTCAATGAGTTAACATAGAGTCGTATTGAACTACAAAAAATACAGGGAAGAATTGTTGTAACTCCTGTTTCCTACTCGACACCAAATTGATTTCTTACAGTCATTGATCTACTCAAAAGGTTTTTTTTTTCACAAGATCAGCTGATGATGTTATTACTTTACTACCCCCACCAAGTCAGTTTGCTTCAGACTCGACTAAGTCCTTGCAAGGCTAAAAAAAATGGCACTTCTCCAAATCCTGAAACAACGAAATAACCAATTCATCATCTCTTGGGCTATAGTTCAAATTGTCATCTGGGATTCGCCAGGCATGCCCATTTGTGGCACCCACATGGTCCAAATACTTCCATTTCCAAAAGAGGGTTGGTTCTTAAATCCACAGCAGCAGAAGATTATCTATTGGATTTGTGGTTGTGGTTGTAGCTGTGATTGGGGTTGTGATTGCAGTTGTGGTTGGGGCTGGGGCTGGGGTTGCAGTCGCAGTTGCAGTTGGGGTTGGGGCTGGAGATGCAGTTGCAGTTGCAGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGTTTGGGGCTGGGGATGTATTTCCAGTTGGGTCTGGGGCTGGGGTTGCACTTGCTGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGTTTGGGGCTGGGGGTGTATTTCCAGTTGGGTCTGGGGCTGAGGTTGCACTTGCAGTTGGTGCTGGGGTTGGGGTTGCAGTTGGGGTTGTGGTTGGAAGGTCTGCGGTTGAGGTTGAGGTTGAGGTTGAGGTTGTGGTTGGGGTGGCTGTGGTTGTGCTTGCAGTTGGGGTGGCTGCGGTTGCAGTTGCATGTGCAGTTGTGGTTGCAGTTGCATTTGCAGTTGTGGGGGTCCAGCAGACAACCGATTCCTGCCCCGGCCTCTTCGAGCACCAGCAATACCAGCAATCAACGAGTTACCAATATTAG

mRNA sequence

ATGACGACGAGGAGCGGGAGAGCCGAAAGAGTTGTCGGGGCTGTCCACGATCATCGAAGTGTCGGGGCTGCACGTCCTGTGTGTGCTTTGGATGTCTCCGTTGCCGCTTCTTGGACTGCCATTGCCGTGCCTGCATCGATTTTGTGCAGAATGCAGCACCTTGAGCTTGTTCTGTCTGTGATTGGGGTTGTGATTGCAGTTGTGGTTGGGGCTGGGGCTGGGGTTGCAGTCGCAGTTGCAGTTGGGGTTGGGGCTGGAGATGCAGTTGCAGTTGCAGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGTTTGGGGCTGGGGATGTATTTCCAGTTGGGTCTGGGGCTGGGGTTGCACTTGCTGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGTTTGGGGCTGGGGGTGTATTTCCAGTTGGGTCTGGGGCTGAGGTTGCACTTGCAGTTGGTGCTGGGGTTGGGGTTGCAGTTGGGGTTGTGGTTGGAAGGTCTGCGGTTGAGGTTGAGGTTGAGGTTGAGGTTGTGGTTGGGGTGGCTGTGGTTGTGCTTGCAGTTGGGGTGGCTGCGGTTGCAGTTGCATGTGCAGTTGTGGTTGCAGTTGCATTTGCAGTTGTGGGGGTCCAGCAGACAACCGATTCCTGCCCCGGCCTCTTCGAGCACCAGCAATACCAGCAATCAACGAGTTACCAATATTAG

Coding sequence (CDS)

ATGACGACGAGGAGCGGGAGAGCCGAAAGAGTTGTCGGGGCTGTCCACGATCATCGAAGTGTCGGGGCTGCACGTCCTGTGTGTGCTTTGGATGTCTCCGTTGCCGCTTCTTGGACTGCCATTGCCGTGCCTGCATCGATTTTGTGCAGAATGCAGCACCTTGAGCTTGTTCTGTCTGTGATTGGGGTTGTGATTGCAGTTGTGGTTGGGGCTGGGGCTGGGGTTGCAGTCGCAGTTGCAGTTGGGGTTGGGGCTGGAGATGCAGTTGCAGTTGCAGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGTTTGGGGCTGGGGATGTATTTCCAGTTGGGTCTGGGGCTGGGGTTGCACTTGCTGTTGGGGCTGGGGTTGCAGTTGCAGTTGGGTTTGGGGCTGGGGGTGTATTTCCAGTTGGGTCTGGGGCTGAGGTTGCACTTGCAGTTGGTGCTGGGGTTGGGGTTGCAGTTGGGGTTGTGGTTGGAAGGTCTGCGGTTGAGGTTGAGGTTGAGGTTGAGGTTGTGGTTGGGGTGGCTGTGGTTGTGCTTGCAGTTGGGGTGGCTGCGGTTGCAGTTGCATGTGCAGTTGTGGTTGCAGTTGCATTTGCAGTTGTGGGGGTCCAGCAGACAACCGATTCCTGCCCCGGCCTCTTCGAGCACCAGCAATACCAGCAATCAACGAGTTACCAATATTAG

Protein sequence

MTTRSGRAERVVGAVHDHRSVGAARPVCALDVSVAASWTAIAVPASILCRMQHLELVLSVIGVVIAVVVGAGAGVAVAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGDVFPVGSGAGVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVGRSAVEVEVEVEVVVGVAVVVLAVGVAAVAVACAVVVAVAFAVVGVQQTTDSCPGLFEHQQYQQSTSYQY

Homology

[Close]

BLAST of Lag0037941 vs. NCBI nr
Match: MYD52435.1 (hypothetical protein [Dehalococcoidia bacterium])

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-08
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 77  VAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGDVFPVGSGAGVALAVGAGVA 136
           VAVAVGVG+G AVAV VG+GVAVAVGVG+GVAVAVG G+G    VG G+GVA+AVG+G +
Sbjct: 18  VAVAVGVGSGVAVAVGVGSGVAVAVGVGSGVAVAVGVGSGVAVAVGVGSGVAVAVGSGTS 77

Query: 137 VAVGFGAGGVFPVGSGAEVALAVGAGVGV 166
           VAVG GA  V  VG G  VA+AVG+GVGV
Sbjct: 78  VAVGCGA--VMAVGIG--VAVAVGSGVGV 102

[Close]

BLAST of Lag0037941 vs. NCBI nr
Match: ONI61960.1 (hypothetical protein ALI44B_13825 [Leifsonia sp. ALI-44-B])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-06
Identity = 64/122 (52.46%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 58  LSVIGVVIAVVVGAGAGVAVAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGD 117
           ++  GV + V VG G GV V V VGVG G  V V VG GV V VGVG GV V VG G G 
Sbjct: 1   MAAAGVGVGVAVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGV 60

Query: 118 VFPVGSGAGVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVGRSAVE 177
              VG G GV + VG GV V VG G G    VG G  V + VG GVGV VGV VG +A  
Sbjct: 61  GVGVGVGVGVGVGVGVGVGVGVGVGVGVGVVVGVGVGVGVGVGVGVGVGVGVGVGTAAAL 120

Query: 178 VE 180
            E
Sbjct: 121 TE 122

[Close]

BLAST of Lag0037941 vs. NCBI nr
Match: GBD19705.1 (hypothetical protein HRbin28_00139 [bacterium HR28])

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-06
Identity = 105/213 (49.30%), Postives = 114/213 (53.52%), Query Frame = 0


Query: 11  VVGAVHDHRSVGAARP---VCALDVSVAASWTAIAVPASILCRMQHLELVLSVIGVVIAV 70
           V G V    +VG   P   VCA+ V V     A+ V   +             +GV + V
Sbjct: 69  VAGGVEVGVAVGCGPPTGVVCAVGVGVGVE-VAVGVAVGV------------AVGVAVGV 128

Query: 71  VVGAGAGVAVAVAVGVGAGDAVAVAVGAGVA--VAVGVGAGVAVAVGFGAGDVFPVGSGA 130
            VG   GVAV VAVGV  G AV V VG  VA  VAVGV  GVAV VG G G    VG G 
Sbjct: 129 AVGVAVGVAVGVAVGVAVGVAVGVGVGVAVAAGVAVGVAVGVAVGVGVGVGVGVAVGVGI 188

Query: 131 GVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVGRSAVEVEVEVEVV 190
           GV +AVG  V VAVG   G    VG G  V +AVG GVGVAVGV VG   V V V V V 
Sbjct: 189 GVGVAVGVAVGVAVGVAVGVAVGVGVGVAVGVAVGVGVGVAVGVAVG---VAVGVAVGVA 248

Query: 191 VGVAVVVLAVGVAAVAVACAVVVAVAFAV-VGV 218
           VGVAV V  VGV AV VA +V V V F V VGV
Sbjct: 249 VGVAVGV-EVGV-AVGVAVSVGVLVGFGVLVGV 263

[Close]

BLAST of Lag0037941 vs. NCBI nr
Match: VCA40504.1 (Uncharacterised protein [Burkholderia pseudomallei])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-06
Identity = 63/118 (53.39%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 61  IGVVIAVVVGAGAGVAVAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGDVFP 120
           +GV + V VG G GV V V VGVG G  V V VG GV V VGVG GV V VG G G    
Sbjct: 5   VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 64

Query: 121 VGSGAGVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVGRSAVEV 179
           VG G GV + VG GV V VG G G    VG G  V + VG GVGV VGV VG     V
Sbjct: 65  VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGSGGTSV 122

[Close]

BLAST of Lag0037941 vs. NCBI nr
Match: WP_166791019.1 (hypothetical protein [Cryobacterium sp. MDB1-5])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-06
Identity = 60/108 (55.56%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 60  VIGVVIAVVVGAGAGVAVAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGDVF 119
           V+GV + V VG G GV V V VGVG G  V V  G GV V VGVG GV V VGFG G   
Sbjct: 6   VVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGFGVGVGVGVGVGVGVGVGVGFGVGAGV 65

Query: 120 PVGSGAGVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAV 168
            VG G GV   VGAGV    G GAG  F VG+G  V   VG GVGV V
Sbjct: 66  GVGVGVGVGFGVGAGVGFGAGVGAGVGFGVGAGVGVGAGVGVGVGVGV 113

[Close]

BLAST of Lag0037941 vs. ExPASy TrEMBL
Match: A0A6I4ZXX2 (Uncharacterized protein OS=Dehalococcoidia bacterium OX=2026734 GN=F4W93_13295 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-08
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 77  VAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGDVFPVGSGAGVALAVGAGVA 136
           VAVAVGVG+G AVAV VG+GVAVAVGVG+GVAVAVG G+G    VG G+GVA+AVG+G +
Sbjct: 18  VAVAVGVGSGVAVAVGVGSGVAVAVGVGSGVAVAVGVGSGVAVAVGVGSGVAVAVGSGTS 77

Query: 137 VAVGFGAGGVFPVGSGAEVALAVGAGVGV 166
           VAVG GA  V  VG G  VA+AVG+GVGV
Sbjct: 78  VAVGCGA--VMAVGIG--VAVAVGSGVGV 102

[Close]

BLAST of Lag0037941 vs. ExPASy TrEMBL
Match: A0A1V2NE53 (Uncharacterized protein OS=Leifsonia sp. ALI-44-B OX=1933776 GN=ALI44B_13825 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-07
Identity = 64/122 (52.46%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 58  LSVIGVVIAVVVGAGAGVAVAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGD 117
           ++  GV + V VG G GV V V VGVG G  V V VG GV V VGVG GV V VG G G 
Sbjct: 1   MAAAGVGVGVAVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGV 60

Query: 118 VFPVGSGAGVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVGRSAVE 177
              VG G GV + VG GV V VG G G    VG G  V + VG GVGV VGV VG +A  
Sbjct: 61  GVGVGVGVGVGVGVGVGVGVGVGVGVGVGVVVGVGVGVGVGVGVGVGVGVGVGVGTAAAL 120

Query: 178 VE 180
            E
Sbjct: 121 TE 122

[Close]

BLAST of Lag0037941 vs. ExPASy TrEMBL
Match: A0A2H5Z1X6 (Uncharacterized protein OS=bacterium HR28 OX=2035423 GN=HRbin28_00139 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 105/213 (49.30%), Postives = 114/213 (53.52%), Query Frame = 0


Query: 11  VVGAVHDHRSVGAARP---VCALDVSVAASWTAIAVPASILCRMQHLELVLSVIGVVIAV 70
           V G V    +VG   P   VCA+ V V     A+ V   +             +GV + V
Sbjct: 69  VAGGVEVGVAVGCGPPTGVVCAVGVGVGVE-VAVGVAVGV------------AVGVAVGV 128

Query: 71  VVGAGAGVAVAVAVGVGAGDAVAVAVGAGVA--VAVGVGAGVAVAVGFGAGDVFPVGSGA 130
            VG   GVAV VAVGV  G AV V VG  VA  VAVGV  GVAV VG G G    VG G 
Sbjct: 129 AVGVAVGVAVGVAVGVAVGVAVGVGVGVAVAAGVAVGVAVGVAVGVGVGVGVGVAVGVGI 188

Query: 131 GVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVGRSAVEVEVEVEVV 190
           GV +AVG  V VAVG   G    VG G  V +AVG GVGVAVGV VG   V V V V V 
Sbjct: 189 GVGVAVGVAVGVAVGVAVGVAVGVGVGVAVGVAVGVGVGVAVGVAVG---VAVGVAVGVA 248

Query: 191 VGVAVVVLAVGVAAVAVACAVVVAVAFAV-VGV 218
           VGVAV V  VGV AV VA +V V V F V VGV
Sbjct: 249 VGVAVGV-EVGV-AVGVAVSVGVLVGFGVLVGV 263

[Close]

BLAST of Lag0037941 vs. ExPASy TrEMBL
Match: A0A4V6Q574 (Uncharacterized protein OS=Paraburkholderia phenazinium OX=60549 GN=DFH20_4304 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 62/112 (55.36%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 61  IGVVIAVVVGAGAGVAVAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGDVFP 120
           +GV + V VG G GV V V VGVG G  V V VG GV V VGVG GV V VG G G    
Sbjct: 3   LGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 62

Query: 121 VGSGAGVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVG 173
           VG G GV + VG GV V VG G G    VG G  V + VG GVGV VGV VG
Sbjct: 63  VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 114

[Close]

BLAST of Lag0037941 vs. ExPASy TrEMBL
Match: A0A150H4Y3 (Uncharacterized protein OS=Gonium pectorale OX=33097 GN=GPECTOR_5000g1312 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.7e-06
Identity = 64/115 (55.65%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 61  IGVVIAVVVGAGAGVAVAVAVGVGAGDAVAVAVGAGVAVAVGVGAGVAVAVGFGAGDVFP 120
           +GV + V VGAGAGV V V VGVGAG       GAGV V VGVG GV V VG G G    
Sbjct: 11  VGVGVGVGVGAGAGVGVGVGVGVGAG--AGAGAGAGVGVGVGVGVGVGVGVGVGVGVGVG 70

Query: 121 VGSGAGVALAVGAGVAVAVGFGAGGVFPVGSGAEVALAVGAGVGVAVGVVVGRSA 176
           VG G GV + VG GV V VG G G    VG G  V + VG GVGV VGV  G SA
Sbjct: 71  VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVRPGWSA 123

The following BLAST results are available for this feature:

BLAST of Lag0037941 vs. NCBI nr


Match Name	E-value	Identity	Description
MYD52435.1	8.7e-08	69.66	hypothetical protein [Dehalococcoidia bacterium]	[more]
ONI61960.1	1.3e-06	52.46	hypothetical protein ALI44B_13825 [Leifsonia sp. ALI-44-B]	[more]
GBD19705.1	2.8e-06	49.30	hypothetical protein HRbin28_00139 [bacterium HR28]	[more]
VCA40504.1	3.6e-06	53.39	Uncharacterised protein [Burkholderia pseudomallei]	[more]
WP_166791019.1	3.6e-06	55.56	hypothetical protein [Cryobacterium sp. MDB1-5]	[more]

BLAST of Lag0037941 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0037941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6I4ZXX2	4.2e-08	69.66	Uncharacterized protein OS=Dehalococcoidia bacterium OX=2026734 GN=F4W93_13295 P...	[more]
A0A1V2NE53	6.1e-07	52.46	Uncharacterized protein OS=Leifsonia sp. ALI-44-B OX=1933776 GN=ALI44B_13825 PE=...	[more]
A0A2H5Z1X6	1.3e-06	49.30	Uncharacterized protein OS=bacterium HR28 OX=2035423 GN=HRbin28_00139 PE=4 SV=1	[more]
A0A4V6Q574	2.3e-06	55.36	Uncharacterized protein OS=Paraburkholderia phenazinium OX=60549 GN=DFH20_4304 P...	[more]
A0A150H4Y3	8.7e-06	55.65	Uncharacterized protein OS=Gonium pectorale OX=33097 GN=GPECTOR_5000g1312 PE=4 S...	[more]

BLAST of Lag0037941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037941.1	Lag0037941.1	mRNA