Lag0037931 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037931
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionstem-specific protein TSJT1-like
Locationchr2: 10734979 .. 10738686 (+)
RNA-Seq ExpressionLag0037931
SyntenyLag0037931
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCTTAGAAACTCATGTATCAGGAGGGCATCCAAATCTTCTTAGATGCCTCTCGTGTGGGCATCCTAGGATGTCCGGGCATCCCGAGATGCCTAGGCATCTTACATCACCACAAAACAAGCGGGGTAATCCAGATACCCATTCCATGGGAATCTTGGATTACTGCGAAACAAACGACCCCTTAGATCTAACTGTACAAACTATCAAACTTATTGTGACGGTCTTATTGAATAATTCCTAAGACCAACAAAAAAAAAAAAAAAAACCGTGAGTCTAACATCGGAGAGGGTATCGCCTAAAATTAATAAAATTAGATTAAGAAATTGTGTGGTGTAATTTTCACATAGAGCTATGTCTTATGAAGACTACTAATCAATCTAGAACCAGTTCACATGAAGCATTTCAAGTTGCAATTAAACCTAACCTAAAACACACATAGGGAGCATTTATTATTACTTGTTGACATTAATTTTCTTTTTTTGATATATTTATGTATAAGATGGTCACATGTTACCCTATTATTATATTATTATAGTTACTATCTAATTGTTAATTTTTTAATCTATTATCTTGTTTTGAAATTTGATAACCCATTTTATTTTTAGGTTTTTTTTATATAATTAAGGTGTTTCTATCTTTATCTATAGATTTTTTTTTCTATGTTGTTATCTACTTTGTACAAATATTTATAAAATCCAATCCAAGTTTTGAAAATTAAAAAAAAAAAATAGTTATTAAAAAAGTAGCTATTAAAAAAAATAGTTAAAAATTCAGTTGTTCATTTAAGAAGATGAAAACCATGGTAAAAAATTATGAAAACAAACACAATTTTCAAAAATCAAAAACTAAAAACCAAATGATTATCAAACGACCTTACAAATACTCATAAATTACCTATGAATTTACACTTCACCATGTTAAGATTCAGAATTGTAACATAATTATAAATATAGTTTAAAAGATGAAATGAATTTCAGTATAGTACTTGTCCAAGCAAAGATCTATTAGTTGATGGCAAAAATAAATATGTAAATAGCATAAAGTTTTAGTATTTGTGTCAAGAATAATCCATAACTCAAATAGTTGACAATGGTTAATTTATTATATTCAGGATTTAATTTGAGAGAAGATAATAATAATGTACTCTCTTATATTTTATTTTTCAAGCAAGCATGTTGGCCACCATTCATATTATATTTCAAGCATGCATTTTGAAATATTCTCATAGGTTTAGTGAGAAATAATCTCAAAGTGATCATTTGATGATGATGTTCATATTTTCCTTTTATATTTTTTTCTTTTAAAATTAAACTTATTTAATATCAAATTCTAAACTAAATCTCTAGTATTTTTTTTTTTTTTAATTCAACTTGTGGGAAGTGGGAATTCGAATCTTGATATTTTGGTCGAGAGTATATGTTTTAACTAATTGAGTTCCTCTTATATAACAAACACCAATATAATAGGTAAAAAGACTATATTAAAAAATAAAAATTTTCCAAAAAAATGAAAACTAAACCCTAAATGAAAATTTACATATCATAATATATAGATATAGATATGCATGAGAAGGATAGAAAACTTTCATAGTGGTGTTGTATATATCTAATTAAAAAAGGAAGCACCAATTGGTTTCATGTTTTAGAAAAGTAGTTTTGGAGGGTTTCCTTGGAAGAGAAGATGCAATTGATAAATTGATAAAAATGTGGTGGATATATATGAGATTTTTTATTCCTTTTATATATATGAAAAGAAAAAAAGAAAAAAAAAGGCCAATTTCTTTGTGACCTCAAAGTCTATGGAATATATCTCTCAATGTCTAAATCAAAAGAAAATGACACCCACCCATCTCTCTAATTTTGTTATTTTTGGTTCAAAAATTTGAGAGAGGGATCTAATTCCTTTATTTTAAGTCCTTCAAATTTTGATTCATGATCTTGGTGTTTTTGTATTTTATATTATTTTGATTTTTGGTTAAAGGGATGATGGTTTGATAGAGATATTTCATTTTTGTTTTTATGTTTTCTACTACCATGCTTTTTTAATTAGTTATAATTTTATTTGTTTTTCTTTTTATCTAATTTTAAAAATATATTTAGAAATTTGCCCAAATTTTTATTATGAAAAAAAAGGAAAAAATAGACCTGACTTAAATTTGTTGTTAAAAATTAAGCTTAAGAACCCAACTTGCATAATTTAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAACCCCAACTTGCATGTGTTTTTTTTATATATATAATTTTTAAAAATGCTTTCAAAATACTAGCTAGATCAAAAACAAAAATAGGTTTTAAAACTATTTATTTTAGTGTCCAATTTCACTTTAAAACTCCCGATCAAATAAAAAAGAAAATAAAGGAAGATCAAAGATGTCAGTATATTATAGCTCAACTAGCATAAAACTCGTATCAATGATTAAAAGGTCTGTGGTTCAAATCTCTCTCTCGTACATGTTTAAAAAAAATTACAGAAAAATGCAAGTTGCAATTATTTATTTATTATTATTTTTTTTTTGGGACAAAATTGCAATTGGTATTATGCAAACCCTACCATTTTAGACTATAATTTCAAAAGAAAAATAAATAAAAAAAGTGAAAAACTAAACAAAAGAGTGACTACTACTTAACCCAACTTTAATTTTTCAAAAAACAAGATCATTACCCAATTGAATTGAAATAATTGAAATAACAAAATTTAAAAGAAATGGTACAAAATTTGAACCCATATAGATTTCTTAAGATTAAAATTAGGGTAAAATACCCTTTTGGTCTCTCATGTTTTAGGATCGTTTCCAATAGGTCCCTAGGTTTGAAAATTGAACAATCAAGTCTCCACTGTTTAAAAAATACTTCTATTGAGTCCTTGGACCGTTAATTTTTTTAACGGTGATGACGTGGCAGTTACGGTGCTGACGTGGCATATTTTTTTAAATTAAAATATTAATTTTTGAATTAAAATAATAATATATTAATATATTAAATAATAATAATAAGTTTTTTTTTAAAGAAAATAATCTTTCTCTCTCCCCCACCCACCCACCCGAACCCCTTCTTCCCCTTTCCCTTTCTTTCTCTCTCCTTTCCCCCTCCCATGTCGTCGCCCATTTGAGCGGCAGCTTCGCCTTCATCCTCTTCGACACCTCCACCTCCACTCTCTTCGTCGCCTCTATTAGTTACTTTCCACTTCTACTTTCCGAAATCGGACTTACACAGCATCGATTTTTTATCACCCTTTCTGTTGATCTTGGATTTTGCAGGATCAGTTCGGGAAAGTGCCTCTGTATTGGGGAATCACCGCGTTCGCCGATGATGCTGGACTCCTCAAAGGCGCTTGTGGAAAATCACTCGCTTCGTTTCCTCAAGGTATTTCGAAACCTAGGGATCGGTTTTCGTTGAATTCGGAAATTAGGGCACGGATTGATTCTGGATTGTTTGTTTGTTTCGATTTCAGGCTGTTTCTTCTCCACCGCCACCGCCGCCGATTTCCTCTTACCCAGATGCTACAGACCAACCAGATTCCCGCTGCCGCTGCCTTCCTCTCCTTCATCTTCTCTTCTTTCCCTCTCCTTCGTCATCTCTTCTCTCTCTCAACCCTCAAAACTCTGTTTTCTTCTCGTTCAGCTCCGGCGGGTGCTTTGTTTCTTAAAGATGAAAACGAAACTTGGGGGCTGATTTGA

mRNA sequence

ATGGGAATCTTAGAAACTCATGTATCAGGAGGGCATCCAAATCTTCTTAGATGCCTCTCGTGTGGGCATCCTAGGATGTCCGGGCATCCCGAGATGCCTAGGCATCTTACATCACCACAAAACAAGCGGGGTAATCCAGATACCCATTCCATGGGAATCTTGGATTACTGCGAAACAAACGACCCCTTAGATCTAACTGATCAGTTCGGGAAAGTGCCTCTGTATTGGGGAATCACCGCGTTCGCCGATGATGCTGGACTCCTCAAAGGCGCTTGTGGAAAATCACTCGCTTCGTTTCCTCAAGGTATTTCGAAACCTAGGGATCGGTTTTCGTTGAATTCGGAAATTAGGGCACGGATTGATTCTGGATTGTTTGTTTGTTTCGATTTCAGGCTGTTTCTTCTCCACCGCCACCGCCGCCGATTTCCTCTTACCCAGATGCTACAGACCAACCAGATTCCCGCTGCCGCTGCCTTCCTCTCCTTCATCTTCTCTTCTTTCCCTCTCCTTCGTCATCTCTTCTCTCTCTCAACCCTCAAAACTCTGTTTTCTTCTCGTTCAGCTCCGGCGGGTGCTTTGTTTCTTAAAGATGAAAACGAAACTTGGGGGCTGATTTGA

Coding sequence (CDS)

ATGGGAATCTTAGAAACTCATGTATCAGGAGGGCATCCAAATCTTCTTAGATGCCTCTCGTGTGGGCATCCTAGGATGTCCGGGCATCCCGAGATGCCTAGGCATCTTACATCACCACAAAACAAGCGGGGTAATCCAGATACCCATTCCATGGGAATCTTGGATTACTGCGAAACAAACGACCCCTTAGATCTAACTGATCAGTTCGGGAAAGTGCCTCTGTATTGGGGAATCACCGCGTTCGCCGATGATGCTGGACTCCTCAAAGGCGCTTGTGGAAAATCACTCGCTTCGTTTCCTCAAGGTATTTCGAAACCTAGGGATCGGTTTTCGTTGAATTCGGAAATTAGGGCACGGATTGATTCTGGATTGTTTGTTTGTTTCGATTTCAGGCTGTTTCTTCTCCACCGCCACCGCCGCCGATTTCCTCTTACCCAGATGCTACAGACCAACCAGATTCCCGCTGCCGCTGCCTTCCTCTCCTTCATCTTCTCTTCTTTCCCTCTCCTTCGTCATCTCTTCTCTCTCTCAACCCTCAAAACTCTGTTTTCTTCTCGTTCAGCTCCGGCGGGTGCTTTGTTTCTTAAAGATGAAAACGAAACTTGGGGGCTGATTTGA

Protein sequence

MGILETHVSGGHPNLLRCLSCGHPRMSGHPEMPRHLTSPQNKRGNPDTHSMGILDYCETNDPLDLTDQFGKVPLYWGITAFADDAGLLKGACGKSLASFPQGISKPRDRFSLNSEIRARIDSGLFVCFDFRLFLLHRHRRRFPLTQMLQTNQIPAAAAFLSFIFSSFPLLRHLFSLSTLKTLFSSRSAPAGALFLKDENETWGLI
Homology
[Close]
BLAST of Lag0037931 vs. NCBI nr
Match: XP_022959386.1 (stem-specific protein TSJT1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 43/63 (68.25%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQGISK------PRDRFSLNS 118
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQGISK       R+R   N 
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQGISKLGAIFREREREKANG 207

[Close]
BLAST of Lag0037931 vs. NCBI nr
Match: XP_023006444.1 (stem-specific protein TSJT1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-11
Identity = 42/63 (66.67%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQGISK------PRDRFSLNS 118
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG SK       R+R   N 
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQGTSKLGAIFREREREKANG 207

[Close]
BLAST of Lag0037931 vs. NCBI nr
Match: XP_023006443.1 (stem-specific protein TSJT1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQG 103
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQG 189

[Close]
BLAST of Lag0037931 vs. NCBI nr
Match: XP_022959387.1 (stem-specific protein TSJT1-like isoform X2 [Cucurbita moschata] >KAG6575011.1 Stem-specific protein TSJT1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013582.1 Stem-specific protein TSJT1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQG 103
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQG 189

[Close]
BLAST of Lag0037931 vs. NCBI nr
Match: XP_023548563.1 (stem-specific protein TSJT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQG 103
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQG 189

[Close]
BLAST of Lag0037931 vs. ExPASy TrEMBL
Match: A0A6J1H4Q4 (stem-specific protein TSJT1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460374 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-12
Identity = 43/63 (68.25%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQGISK------PRDRFSLNS 118
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQGISK       R+R   N 
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQGISKLGAIFREREREKANG 207

[Close]
BLAST of Lag0037931 vs. ExPASy TrEMBL
Match: A0A6J1L268 (stem-specific protein TSJT1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499168 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-11
Identity = 42/63 (66.67%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQGISK------PRDRFSLNS 118
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG SK       R+R   N 
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQGTSKLGAIFREREREKANG 207

[Close]
BLAST of Lag0037931 vs. ExPASy TrEMBL
Match: A0A7N0VBQ6 (DUF3700 domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQG 103
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQG 189

[Close]
BLAST of Lag0037931 vs. ExPASy TrEMBL
Match: A0A6J1L4X9 (stem-specific protein TSJT1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499168 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQG 103
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQG 189

[Close]
BLAST of Lag0037931 vs. ExPASy TrEMBL
Match: A0A6J1CAR8 (stem-specific protein TSJT1-like OS=Momordica charantia OX=3673 GN=LOC111009531 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQG 103
           +DQFGKVPLYWGIT     AFADDAGLLKGACGKSLASFPQG
Sbjct: 148 SDQFGKVPLYWGITADGYVAFADDAGLLKGACGKSLASFPQG 189

[Close]
BLAST of Lag0037931 vs. TAIR 10
Match: AT5G19140.1 (Aluminium induced protein with YGL and LRDR motifs )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQG 103
           +DQ GKVPLYWGIT     AFADD  LLKGACGKSLASFPQG
Sbjct: 148 SDQVGKVPLYWGITADGYVAFADDVDLLKGACGKSLASFPQG 189

[Close]
BLAST of Lag0037931 vs. TAIR 10
Match: AT5G19140.2 (Aluminium induced protein with YGL and LRDR motifs )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 0 

Query: 66  TDQFGKVPLYWGIT-----AFADDAGLLKGACGKSLASFPQGISKPRDRFS 112
           +DQ GKVPLYWGIT     AFADD  LLKG    +     +    P+++ +
Sbjct: 148 SDQVGKVPLYWGITADGYVAFADDVDLLKGCYYSTALGGLRSFENPKNKIT 198

The following BLAST results are available for this feature:
BLAST of Lag0037931 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959386.11.4e-1168.25stem-specific protein TSJT1-like isoform X1 [Cucurbita moschata][more]
XP_023006444.15.5e-1166.67stem-specific protein TSJT1-like isoform X2 [Cucurbita maxima][more]
XP_023006443.11.0e-0985.71stem-specific protein TSJT1-like isoform X1 [Cucurbita maxima][more]
XP_022959387.11.0e-0985.71stem-specific protein TSJT1-like isoform X2 [Cucurbita moschata] >KAG6575011.1 S... [more]
XP_023548563.11.0e-0985.71stem-specific protein TSJT1-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0037931 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0037931 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H4Q46.9e-1268.25stem-specific protein TSJT1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1L2682.6e-1166.67stem-specific protein TSJT1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A7N0VBQ65.0e-1085.71DUF3700 domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A6J1L4X95.0e-1085.71stem-specific protein TSJT1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1CAR85.0e-1085.71stem-specific protein TSJT1-like OS=Momordica charantia OX=3673 GN=LOC111009531 ... [more]
BLAST of Lag0037931 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G19140.11.2e-1178.57Aluminium induced protein with YGL and LRDR motifs [more]
AT5G19140.21.4e-0443.14Aluminium induced protein with YGL and LRDR motifs [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024286Domain of unknown function DUF3700PFAMPF12481DUF3700coord: 65..103
e-value: 6.1E-8
score: 32.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037931.1Lag0037931.1mRNA