Lag0037925 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037925
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF1218)
Location	chr2: 10644682 .. 10646357 (-)
RNA-Seq Expression	Lag0037925
Synteny	Lag0037925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAATTGATTCTCATTATAGTTTTTGTACTTGACGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGTAAGCATCAGTTTCTCTCTCGCTCCATTGTCGCTTTCTTTTCTGCTTTTCACTGCAAATTTGTCGATTTGGGGGTTTTTTGCTTTCTGGGTCTGTTTGGTTTCTGTGATTCTGTTTGTGGGTCGTTCTGGTTTTGCTCAAATTGCTATTGGAGAATCGAGAATCCATGAGAGAAGAATCTTGCATTTTCTGAGTTTTTCTTGCCTTTCTGCTTCAAATTACTTCGTTCATTGCTGATAATGTGGTATCGATCCATCTATTAGGGTCAGTAAATCGTTGCTTTAGTTATTGAAGAGCAGGAAAATGGAAATTGGTATTGAAGAGAGTTGTTTTTCTTTAGTTATGAAGATTATGTTTAATGTCAGAGGAAAGTTGAGAAGATTGTTGACATTTTCATGATTCAAAGCAAACTAACTAAGAACATAGTTCAATAATGGTCGTTTTGAGCATATTTCAATTGATTAAGGCATTTATTGCATTTATTTTCTTGATCAAGAGATCAGAAGTTCATCGTTGAACTCAAAATATAGTTCAATAGTGACTATGCTTTGGGTTTTCTAAAATGCAATTCTGAACTTTTGTGAAATGAAGTACAAGGGAACTTCCATAGATTTTTCTGTTTCTTGATAAGCACGATTACTTCATAAAGGTCTAGGCGTTTGCTTTCGATCTAGACAATGGTAAAATTGAGACGACTCTTCTCTTTGAGTTCCACCATCACTCACTCATTCACATTGCTATGAATCTGATCTTGCTGACAAGCTTTATCAAGTGGAAGCCTTTACATTAGAATAAGCTGGAGATCGCAAACTCGATAACTGGTTTTGTTTCACACCCTTTTGGTTCCTTCTTTACTTGAAAGATCAAAGAGTTGGTTTCAACTGATAAGTAATGTCTATATGATATACTGACATAGGGTTTGATCCATTTGGTACATTGTTTTTTAGTATTGTTGATAAACTTATCAGCTAATTGGTTCATTGTGAAGAAGTAACAGCATTGTGTATTTATCGTCTGATAACAGGCCTGGATTGTGCAAGATAGAGAAAAGGATTACAACCATTGTGCCTACGCCTCTGATATCTCGACAGGTTATGGCGTCGGTGGCTTTCTGCTTCTCATGGCCAGCCAGGCCCTCATAATGGGAGCTAGCCGATGTTTTTGTTGCGGTAAATCGTTGAATCCTGGAGGTTCAAGGGCCTGGGCTGTTATCCTATTCATAATTTGCTGGTAAGTGAACCTATTTGATCTTCCACTCCATCAGTTTAAGCCTTGAGCAGAAAGCTTCAAACTAAAGGGTCCCAATCCAATACACACAATCTTGCAGGGTGTTTTTCTTCATTGCTGAGGTTTGCTTGTTTGCGGGTTCGGTAAGGAACGCCTACCACACCAAGTACCGAACCATGTTCGGCGAGGATCCTCCCTCGTGCCAAACTTTGAGGAAGGGAGTTTTTGGTGCAGGTGCAGCCTTCATTTTCTTCAATGCCATTGTATCTGAACTCTACTATGTATTCTACTCCAAGGCAAGAGAAGGCTTCCTTCCATACGGCGGAGAGACTGGCGTCGGCATGGGAACCTACAAATGA

mRNA sequence

ATGGCTTCCAAATTGATTCTCATTATAGTTTTTGTACTTGACGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCCTGGATTGTGCAAGATAGAGAAAAGGATTACAACCATTGTGCCTACGCCTCTGATATCTCGACAGGTTATGGCGTCGGTGGCTTTCTGCTTCTCATGGCCAGCCAGGCCCTCATAATGGGAGCTAGCCGATGTTTTTGTTGCGGTAAATCGTTGAATCCTGGAGGTTCAAGGGCCTGGGCTGTTATCCTATTCATAATTTGCTGGGTGTTTTTCTTCATTGCTGAGGTTTGCTTGTTTGCGGGTTCGGTAAGGAACGCCTACCACACCAAGTACCGAACCATGTTCGGCGAGGATCCTCCCTCGTGCCAAACTTTGAGGAAGGGAGTTTTTGGTGCAGGTGCAGCCTTCATTTTCTTCAATGCCATTGTATCTGAACTCTACTATGTATTCTACTCCAAGGCAAGAGAAGGCTTCCTTCCATACGGCGGAGAGACTGGCGTCGGCATGGGAACCTACAAATGA

Coding sequence (CDS)

ATGGCTTCCAAATTGATTCTCATTATAGTTTTTGTACTTGACGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCCTGGATTGTGCAAGATAGAGAAAAGGATTACAACCATTGTGCCTACGCCTCTGATATCTCGACAGGTTATGGCGTCGGTGGCTTTCTGCTTCTCATGGCCAGCCAGGCCCTCATAATGGGAGCTAGCCGATGTTTTTGTTGCGGTAAATCGTTGAATCCTGGAGGTTCAAGGGCCTGGGCTGTTATCCTATTCATAATTTGCTGGGTGTTTTTCTTCATTGCTGAGGTTTGCTTGTTTGCGGGTTCGGTAAGGAACGCCTACCACACCAAGTACCGAACCATGTTCGGCGAGGATCCTCCCTCGTGCCAAACTTTGAGGAAGGGAGTTTTTGGTGCAGGTGCAGCCTTCATTTTCTTCAATGCCATTGTATCTGAACTCTACTATGTATTCTACTCCAAGGCAAGAGAAGGCTTCCTTCCATACGGCGGAGAGACTGGCGTCGGCATGGGAACCTACAAATGA

Protein sequence

MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGGFLLLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHTKYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGMGTYK

Homology

[Close]

BLAST of Lag0037925 vs. NCBI nr
Match: XP_031740219.1 (uncharacterized protein LOC101208795 [Cucumis sativus] >XP_031740220.1 uncharacterized protein LOC101208795 [Cucumis sativus] >KGN55148.1 hypothetical protein Csa_012625 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 1.1e-90
Identity = 168/184 (91.30%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGGFL 60
           MASKLILIIVFVLD+IAFGLAVAAEQRRSTA +VQD+EK+YN+C Y SDISTGYGVG FL
Sbjct: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lag0037925 vs. NCBI nr
Match: XP_038900268.1 (uncharacterized protein LOC120087350 [Benincasa hispida])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 169/184 (91.85%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGGFL 60
           MASKLILIIVFVLDVIAFGLAVAAEQRRSTA +VQD+EK+YN+C Y SDISTGYGVG FL
Sbjct: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMVASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lag0037925 vs. NCBI nr
Match: XP_008452482.1 (PREDICTED: uncharacterized protein LOC103493502 [Cucumis melo] >KAA0064347.1 DUF1218 domain-containing protein [Cucumis melo var. makuwa] >TYK20240.1 DUF1218 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 167/184 (90.76%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGGFL 60
           MASKLILIIVFVLDVIAFGLAVAAEQRRSTA +VQD+EKDYN+C Y SD+STGYGVG FL
Sbjct: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTANVVQDKEKDYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQ LIM ASRCFCCGKSL+PGGSRA AVILFIICWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRASAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSC+TLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCRTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lag0037925 vs. NCBI nr
Match: XP_022976585.1 (uncharacterized protein LOC111476938 [Cucurbita maxima] >XP_022976586.1 uncharacterized protein LOC111476938 [Cucurbita maxima])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGGFL 60
           MASKL+LIIV VLDVIAFGLAVAAEQRRSTA +V D EK+YN+C Y SD+STGYGVG FL
Sbjct: 1   MASKLVLIIVIVLDVIAFGLAVAAEQRRSTANVVPDSEKNYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQALIM ASRCFCCGKSL+PGGSRAWA+ILFIICWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQALIMVASRCFCCGKSLSPGGSRAWAIILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Lag0037925 vs. NCBI nr
Match: XP_022935762.1 (uncharacterized protein LOC111442584 [Cucurbita moschata] >XP_023535137.1 uncharacterized protein LOC111796652 [Cucurbita pepo subsp. pepo] >KAG6591977.1 hypothetical protein SDJN03_14323, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024853.1 hypothetical protein SDJN02_13672 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTAWIVQDREKDYNHCAYASDISTGYGVGGFL 60
           MASKL+LIIV VLDVIAFGLAVAAEQRRSTA +V D EK+YN+C Y SDISTGYGVG FL
Sbjct: 1   MASKLVLIIVIVLDVIAFGLAVAAEQRRSTANVVPDSEKNYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQALIMGASRCFCCGKSLNPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQALIM ASRCFCCGKSL+PGGSRAWA+ILFIICWVFFFIAEVCLFAGS+RNAYHT
Sbjct: 61  LLMASQALIMVASRCFCCGKSLSPGGSRAWAIILFIICWVFFFIAEVCLFAGSIRNAYHT 120

Query: 121 KYRTMFGEDPPSCQTLRKGVFGAGAAFIFFNAIVSELYYVFYSKAREGFLPYGGETGVGM 180
           KYRTMFG++PPSCQTLRKGVFGAGAAFIF NAIVSELYYVFYSKARE FLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

The following BLAST results are available for this feature:

BLAST of Lag0037925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740219.1	1.1e-90	91.30	uncharacterized protein LOC101208795 [Cucumis sativus] >XP_031740220.1 uncharact...	[more]
XP_038900268.1	1.8e-90	91.85	uncharacterized protein LOC120087350 [Benincasa hispida]	[more]
XP_008452482.1	4.5e-89	90.76	PREDICTED: uncharacterized protein LOC103493502 [Cucumis melo] >KAA0064347.1 DUF...	[more]
XP_022976585.1	1.0e-88	89.67	uncharacterized protein LOC111476938 [Cucurbita maxima] >XP_022976586.1 uncharac...	[more]
XP_022935762.1	1.0e-88	89.67	uncharacterized protein LOC111442584 [Cucurbita moschata] >XP_023535137.1 unchar...	[more]

BLAST of Lag0037925 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Modifying wall lignin-1/2	PFAM	PF06749	DUF1218	coord: 59..152 e-value: 8.0E-28 score: 96.8
None	No IPR available	PANTHER	PTHR31769	OS07G0462200 PROTEIN-RELATED	coord: 1..184
None	No IPR available	PANTHER	PTHR31769:SF56	SUBFAMILY NOT NAMED	coord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037925.1	Lag0037925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane