Lag0037916 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037916
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 10555612 .. 10556208 (+)
RNA-Seq Expression	Lag0037916
Synteny	Lag0037916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTACAAAAGCTAGTTTCTTGGTTGGTCTCTTGGTGTTTCTCTGCTTAAGCCTTAGCTCTGCCAATCGAGTTCTCAAAGACAACGATGCTGAAAATGAGTCAATAAGTAACAGTGTATCCTCTGGGCAAGACAATCAACTTCACAATTTCAGCCATGCTGAGCTAAATAGCAAAGTACCAAAAGGTAGCATACCGAAATTCAGTTCTGTTGGTACAACGAATGGTGACTGCTGCAACTATGACAACAACTGTGGAGGAGGATATGTGTGTCCTCCAAACTACGGATGTGGTGGGAACTCTGGTTGTCAATCCTGCTACACTTGTTCACAATGTTCATGGCAGGGATGCCAAGGTGGATGTCAATGCCAAAGTGGATGCCAAGGTGGATGTCAATGCCAAAGTGGATGTCAAGGATGCCAAGGTGGATGCCAAGTCCGCATCGATAACAACTCTAAAGTCCAAGAATCTATTCAAACGGCTGAACCTGATCCTCCTCTTACAATCGTTCCATCAGGGCAGCCAGCTAATCATAACATAAAATCCAGTGGGGGAGCAAATCAGGATATGAAATCCAATGGCGGTCTGGTTTAG

mRNA sequence

ATGGCTGTTACAAAAGCTAGTTTCTTGGTTGGTCTCTTGGTGTTTCTCTGCTTAAGCCTTAGCTCTGCCAATCGAGTTCTCAAAGACAACGATGCTGAAAATGAGTCAATAAGTAACAGTGTATCCTCTGGGCAAGACAATCAACTTCACAATTTCAGCCATGCTGAGCTAAATAGCAAAGTACCAAAAGGTAGCATACCGAAATTCAGTTCTGTTGGTACAACGAATGGTGACTGCTGCAACTATGACAACAACTGTGGAGGAGGATATGTGTGTCCTCCAAACTACGGATGTGGTGGGAACTCTGGTTGTCAATCCTGCTACACTTGTTCACAATGTTCATGGCAGGGATGCCAAGGTGGATGTCAATGCCAAAGTGGATGCCAAGGTGGATGTCAATGCCAAAGTGGATGTCAAGGATGCCAAGGTGGATGCCAAGTCCGCATCGATAACAACTCTAAAGTCCAAGAATCTATTCAAACGGCTGAACCTGATCCTCCTCTTACAATCGTTCCATCAGGGCAGCCAGCTAATCATAACATAAAATCCAGTGGGGGAGCAAATCAGGATATGAAATCCAATGGCGGTCTGGTTTAG

Coding sequence (CDS)

ATGGCTGTTACAAAAGCTAGTTTCTTGGTTGGTCTCTTGGTGTTTCTCTGCTTAAGCCTTAGCTCTGCCAATCGAGTTCTCAAAGACAACGATGCTGAAAATGAGTCAATAAGTAACAGTGTATCCTCTGGGCAAGACAATCAACTTCACAATTTCAGCCATGCTGAGCTAAATAGCAAAGTACCAAAAGGTAGCATACCGAAATTCAGTTCTGTTGGTACAACGAATGGTGACTGCTGCAACTATGACAACAACTGTGGAGGAGGATATGTGTGTCCTCCAAACTACGGATGTGGTGGGAACTCTGGTTGTCAATCCTGCTACACTTGTTCACAATGTTCATGGCAGGGATGCCAAGGTGGATGTCAATGCCAAAGTGGATGCCAAGGTGGATGTCAATGCCAAAGTGGATGTCAAGGATGCCAAGGTGGATGCCAAGTCCGCATCGATAACAACTCTAAAGTCCAAGAATCTATTCAAACGGCTGAACCTGATCCTCCTCTTACAATCGTTCCATCAGGGCAGCCAGCTAATCATAACATAAAATCCAGTGGGGGAGCAAATCAGGATATGAAATCCAATGGCGGTCTGGTTTAG

Protein sequence

MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESISNSVSSGQDNQLHNFSHAELNSKVPKGSIPKFSSVGTTNGDCCNYDNNCGGGYVCPPNYGCGGNSGCQSCYTCSQCSWQGCQGGCQCQSGCQGGCQCQSGCQGCQGGCQVRIDNNSKVQESIQTAEPDPPLTIVPSGQPANHNIKSSGGANQDMKSNGGLV

Homology

[Close]

BLAST of Lag0037916 vs. NCBI nr
Match: XP_023535133.1 (mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-51
Identity = 137/226 (60.62%), Postives = 157/226 (69.47%), Query Frame = 0


Query: 1   MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESISNSVSSGQDNQLHNFSHAELNSK 60
           MAVTK+SFLVGLL FLCLSLSSANRVLK+NDAE E +SN+VSS QDNQL +F++AEL S 
Sbjct: 1   MAVTKSSFLVGLLAFLCLSLSSANRVLKNNDAEKELLSNNVSSEQDNQLQDFNNAELKS- 60

Query: 61  VPKGSIPKFSSVGTTNGDC-CNYDNNCGGGYVCPPNYGC------------GGNSGCQSC 120
           +P+G++PK SSVG+  GDC  N  ++ GGGY  PPNYG             GG+SGCQ C
Sbjct: 61  IPEGNVPKLSSVGSGYGDCGGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQPC 120

Query: 121 YTCSQCSWQGCQGGCQCQSGCQGGCQ-CQSGCQGCQGGCQ------------VRIDNNSK 180
           YT S C WQGC G   CQ GCQGGCQ CQ GCQGCQGGCQ            V   N+SK
Sbjct: 121 YTYSPCPWQGCPGFQGCQ-GCQGGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVNDSK 180

Query: 181 VQ-ESIQTA-EPDPPLTIVPSGQPANHNIKSSGGANQDMKSNGGLV 199
           +Q ESI    EP+PP+       P NH+IKSSGGANQDMKSNGGLV
Sbjct: 181 IQDESIPMGEEPEPPVL------PENHHIKSSGGANQDMKSNGGLV 218

[Close]

BLAST of Lag0037916 vs. NCBI nr
Match: KAG6591970.1 (hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-48
Identity = 132/219 (60.27%), Postives = 153/219 (69.86%), Query Frame = 0


Query: 1   MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESISNSVSSGQDNQLHNFSHAELNSK 60
           MAVTK SFLVGLL FLCLSLSSANRVLK+NDAE E ++N+VSS QDNQL +F++AEL S 
Sbjct: 1   MAVTKNSFLVGLLAFLCLSLSSANRVLKNNDAEKELLNNNVSSEQDNQLQDFNNAELKS- 60

Query: 61  VPKGSIPKFSSVGTTNGDC-CNYDNNCGGGYVCPPNYGC------------GGNSGCQSC 120
           +P+G++PK SSVG+  GDC  N  ++ GGGY  PPNYG             GG+SGCQ C
Sbjct: 61  IPEGNVPKLSSVGSGYGDCGGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQPC 120

Query: 121 YTCSQCSWQGCQGGCQCQSGCQGGCQ-CQSGCQGCQG-----GCQVRIDNNSKVQ-ESIQ 180
           YT S C WQGC G   CQ GCQGGCQ CQ GCQGCQ        +V   N+SK+Q ESI 
Sbjct: 121 YTYSPCPWQGCPGFQGCQ-GCQGGCQGCQGGCQGCQAPHPPCTFEVGTVNDSKIQDESIP 180

Query: 181 TA-EPDPPLTIVPSGQPANHNIKSSGGANQDMKSNGGLV 199
              EP+PP+       P NH+IKSSGGANQDMKSNGGLV
Sbjct: 181 MGEEPEPPVL------PENHHIKSSGGANQDMKSNGGLV 211

[Close]

BLAST of Lag0037916 vs. NCBI nr
Match: KGN55137.1 (hypothetical protein Csa_012773 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.0e-43
Identity = 111/225 (49.33%), Postives = 137/225 (60.89%), Query Frame = 0


Query: 1   MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESISNSVSSGQDNQLHNFSHAELNSK 60
           MAVT+ S LVGLL FLCLSL SANR+LK+NDAEN+ I + V SG++N   N +H EL S 
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS- 60

Query: 61  VPKGSIPKFSSVGTTNGDCCNYDNNCGGGYVCPPNYGC---------------------- 120
           +P  S+ K SS+   NGDCC+Y  NC  G   PP  GC                      
Sbjct: 61  IPTDSMAKISSINPINGDCCSYGTNC--GIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSG 120

Query: 121 ----GGNSGCQSCYTCSQCSWQGCQGGCQCQSGCQGGCQCQSGCQGCQG-GCQVRIDNNS 180
               GG+S CQSC TCS C WQGC G  +CQ           GCQGCQ  GCQ  +D++ 
Sbjct: 121 GGGGGGSSSCQSCNTCSSCQWQGCHGCQECQ-----------GCQGCQSCGCQASMDDSK 180

Query: 181 KVQESIQTAEPDPPLTIVPSGQPANHNIKSSGGANQDMKSNGGLV 199
             Q+S+QT EP P +TIVP  +P +++IKSSGG+NQD+KSNGGLV
Sbjct: 181 VEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]

BLAST of Lag0037916 vs. NCBI nr
Match: KAG6607873.1 (hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-41
Identity = 115/198 (58.08%), Postives = 132/198 (66.67%), Query Frame = 0


Query: 1   MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESISNSVSSGQDNQLHNFSHAELNSK 60
           MAVTK S LV LL+ LCLS SSANRVLKDND+ENESI+NSVS GQ+ +LHNF HAELN+ 
Sbjct: 7   MAVTKDSILVSLLMLLCLSHSSANRVLKDNDSENESINNSVSFGQEYELHNFIHAELNNI 66

Query: 61  VPKGSIPKFSSVGTTNGDCCNYDNNCGGGYVCPPNYGCGGNSGCQSCYTCSQCSWQGCQG 120
           VP+GSIPKF S      DCCN+ N+ GGGYVCPPN+ CG NSGC+  Y+CS C W     
Sbjct: 67  VPEGSIPKFRSY----RDCCNHGNH-GGGYVCPPNHACGRNSGCRPYYSCSPCQWWR--- 126

Query: 121 GCQCQSGCQGGCQCQSGCQGCQGGCQVRIDNNSKVQESIQTAEPDPPLTIVPSGQPANHN 180
                      C C  G             + S VQESIQT+E D     VP+ +PANHN
Sbjct: 127 ----YPVLPPPCGCAVG------------KSYSMVQESIQTSEADLDGN-VPAVEPANHN 179

Query: 181 IKSSGGANQDMKSNGGLV 199
           IK SGGANQ+MKSNGGLV
Sbjct: 187 IKFSGGANQNMKSNGGLV 179

[Close]

BLAST of Lag0037916 vs. NCBI nr
Match: KAA0064338.1 (hypothetical protein E6C27_scaffold255G00370 [Cucumis melo var. makuwa] >TYK20249.1 hypothetical protein E5676_scaffold134G003880 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-04
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESIS 39
          MAVTK S LVGLL FLCLSLSSANR+LK+NDAEN+ I+
Sbjct: 1  MAVTKTSLLVGLLAFLCLSLSSANRILKNNDAENQLIA 38

[Close]

BLAST of Lag0037916 vs. ExPASy TrEMBL
Match: A0A0A0L3F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 111/225 (49.33%), Postives = 137/225 (60.89%), Query Frame = 0


Query: 1   MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESISNSVSSGQDNQLHNFSHAELNSK 60
           MAVT+ S LVGLL FLCLSL SANR+LK+NDAEN+ I + V SG++N   N +H EL S 
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS- 60

Query: 61  VPKGSIPKFSSVGTTNGDCCNYDNNCGGGYVCPPNYGC---------------------- 120
           +P  S+ K SS+   NGDCC+Y  NC  G   PP  GC                      
Sbjct: 61  IPTDSMAKISSINPINGDCCSYGTNC--GIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSG 120

Query: 121 ----GGNSGCQSCYTCSQCSWQGCQGGCQCQSGCQGGCQCQSGCQGCQG-GCQVRIDNNS 180
               GG+S CQSC TCS C WQGC G  +CQ           GCQGCQ  GCQ  +D++ 
Sbjct: 121 GGGGGGSSSCQSCNTCSSCQWQGCHGCQECQ-----------GCQGCQSCGCQASMDDSK 180

Query: 181 KVQESIQTAEPDPPLTIVPSGQPANHNIKSSGGANQDMKSNGGLV 199
             Q+S+QT EP P +TIVP  +P +++IKSSGG+NQD+KSNGGLV
Sbjct: 181 VEQDSVQTGEPAPVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]

BLAST of Lag0037916 vs. ExPASy TrEMBL
Match: A0A5A7V9R7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003880 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MAVTKASFLVGLLVFLCLSLSSANRVLKDNDAENESIS 39
          MAVTK S LVGLL FLCLSLSSANR+LK+NDAEN+ I+
Sbjct: 1  MAVTKTSLLVGLLAFLCLSLSSANRILKNNDAENQLIA 38

The following BLAST results are available for this feature:

BLAST of Lag0037916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535133.1	1.8e-51	60.62	mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591970.1	2.4e-48	60.27	hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN55137.1	4.0e-43	49.33	hypothetical protein Csa_012773 [Cucumis sativus]	[more]
KAG6607873.1	1.7e-41	58.08	hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0064338.1	1.3e-04	78.95	hypothetical protein E6C27_scaffold255G00370 [Cucumis melo var. makuwa] >TYK2024...	[more]

BLAST of Lag0037916 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0037916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F6	1.9e-43	49.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1	[more]
A0A5A7V9R7	6.1e-05	78.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lag0037916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037916.1	Lag0037916.1	mRNA