Lag0037890 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037890
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	WD repeat-containing protein 20-like
Location	chr2: 10243617 .. 10244129 (+)
RNA-Seq Expression	Lag0037890
Synteny	Lag0037890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGTCTTGTTGTTATCTTGTATGTTTCAGAATATATGGATCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAATATGTCTCATTCAGGTGACCTTAATTCACCAGGTAAGGTAACCAACGTGTTACAGTATGGAATTTGTGTTGTTCTAATTGATCAATGTGTGTTGGGTTTGTAAGTTGTCTTTGTGTTTTTCTCAGGATCGTATTAAGTCTTTGCATTTTAGAATTTCAAATCCTCTCTACCATGCATTTGATCTTGAAGTTAAGGATGGTCACGACCTACTTATTGGATTGAATTCTGGAGATGGTAAATATGTTTTTCTCTATATATGATTTGTGTTGGTTGTTTCTAGATGAAACTGTGTTTGAATTTCTCATTCTCTATGCATACTGTAGTCTACTCGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAATAAAGAGGGCACTTTCAATAACGGGCAAGAGCATTAG

mRNA sequence

ATGGTTTGTCTTGTTGTTATCTTGTATGTTTCAGAATATATGGATCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAATATGTCTCATTCAGGTGACCTTAATTCACCAGGTAAGGATCGTATTAAGTCTTTGCATTTTAGAATTTCAAATCCTCTCTACCATGCATTTGATCTTGAAGTTAAGGATGGTCACGACCTACTTATTGGATTGAATTCTGGAGATGTCTACTCGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAATAAAGAGGGCACTTTCAATAACGGGCAAGAGCATTAG

Coding sequence (CDS)

ATGGTTTGTCTTGTTGTTATCTTGTATGTTTCAGAATATATGGATCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAATATGTCTCATTCAGGTGACCTTAATTCACCAGGTAAGGATCGTATTAAGTCTTTGCATTTTAGAATTTCAAATCCTCTCTACCATGCATTTGATCTTGAAGTTAAGGATGGTCACGACCTACTTATTGGATTGAATTCTGGAGATGTCTACTCGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAATAAAGAGGGCACTTTCAATAACGGGCAAGAGCATTAG

Protein sequence

MVCLVVILYVSEYMDQNKTLAQRKMILNMSHSGDLNSPGKDRIKSLHFRISNPLYHAFDLEVKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKEGTFNNGQEH

Homology

[Close]

BLAST of Lag0037890 vs. NCBI nr
Match: XP_022997935.1 (WD repeat-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 33  GDLNSPGKDRIKSLHFRISNPLYHAFDLEVKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 92
           GDLNSP KD IKSLHF  SNP+ HAFD E KDGHDLLIGLNSGDVYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 93  LVGAQHYNKEGTFNNGQ 110
           LVGAQHYNKEGT NN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Lag0037890 vs. NCBI nr
Match: XP_023523294.1 (WD repeat-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 33  GDLNSPGKDRIKSLHFRISNPLYHAFDLEVKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 92
           GDLNSP KD IKSLHF  SNP+ HAFD E KDGHDLLIGLNSGDVYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 93  LVGAQHYNKEGTFNNGQ 110
           LVGAQHYNKEGT NN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Lag0037890 vs. NCBI nr
Match: KAG6607184.1 (hypothetical protein SDJN03_00526, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 33  GDLNSPGKDRIKSLHFRISNPLYHAFDLEVKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 92
           GDLNSP KD IKSLHF  SNP+ HAFD E KDGHDLLIGLNSGDVYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 93  LVGAQHYNKEGTFNNGQ 110
           LVGAQHYNKEGT NN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Lag0037890 vs. NCBI nr
Match: XP_022948722.1 (WD repeat-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 33  GDLNSPGKDRIKSLHFRISNPLYHAFDLEVKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 92
           GDLNSP KD IKSLHF  SNP+ HAFD E KDGHDLLIGLNSGDVYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 93  LVGAQHYNKEGTFNNGQ 110
           LVGAQHYNKEGT NN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Lag0037890 vs. NCBI nr
Match: XP_022156951.1 (dystrophia myotonica WD repeat-containing protein-like [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-28
Identity = 65/77 (84.42%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 33  GDLNSPGKDRIKSLHFRISNPLYHAFDLEVKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 92
           GDLNSP KD IKSLHF  SNP+ HAFD E KDGHDLLIGLNSGDVYS+SLRQQLQDVGKK
Sbjct: 177 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSISLRQQLQDVGKK 236

Query: 93  LVGAQHYNKEGTFNNGQ 110
           LVGAQHYNKEGT NN +
Sbjct: 237 LVGAQHYNKEGTVNNSR 253

The following BLAST results are available for this feature:

BLAST of Lag0037890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997935.1	2.0e-28	85.71	WD repeat-containing protein 20-like [Cucurbita maxima]	[more]
XP_023523294.1	2.0e-28	85.71	WD repeat-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607184.1	2.0e-28	85.71	hypothetical protein SDJN03_00526, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948722.1	2.0e-28	85.71	WD repeat-containing protein 20-like [Cucurbita moschata]	[more]
XP_022156951.1	2.7e-28	84.42	dystrophia myotonica WD repeat-containing protein-like [Momordica charantia]	[more]

BLAST of Lag0037890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14107:SF23	WD REPEAT-CONTAINING PROTEIN 20-LIKE	coord: 33..106
None	No IPR available	PANTHER	PTHR14107	WD REPEAT PROTEIN	coord: 33..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037890.1	Lag0037890.1	mRNA