Lag0037865 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037865
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	chr2: 9965065 .. 9966335 (-)
RNA-Seq Expression	Lag0037865
Synteny	Lag0037865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGACCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGGTATGGATTTTGGATTCTGTCATTTCTGTTTGGTTTCTGGGAATTTTGGGGGAGAGGGGAGAGTGTTTGGGTTTATGTCGTCTTTTTGTGTGAATTGGGAAGGGGAAATTAGGTATCGTTTGGATCGCAGTTAGGGGCCATGGATATTTGAACTATGTACCCCACAGCGATTGGAATTTGACATTTTCACACACTTACAAATCTGGGTTTGAAACAAGGAAATGATATGGATTGTGAGAAGGGTTTTGAACCTAGTTATTGCTGATGCACTTAAAAAGTAGAAATGAGAGGCCTAGAATTGATTTTTCTTTACAAAAGTTAATTTCAATATCAGTAGCCTGAACTGGATGGGGATATGAAAAGAACTTTAGTGTCTTACTCTAGGTTTTGTGTTGGGTTAAGAATGGCTAGGCAGAATCAAATCCCTGTGGTTTCCTGCTCTTCATTTATTATTTACTCATAGCTTCAACTTGTTTCAAATTGAAGAGTTAGTCTTTATATCAATTGTATGCTTACTGAAGATTTTAATTGAAACTGAAAGCTTGATGTTAATTCATCACAAATCCATAGCCCAATCTACTTCTAGTTGGTCTGTAAACTATTGACACTTGAGTCTGTAGCCTTGAAATGAAATTGCTGTAAACAAGGATAATGATGTGCATTGAACCGATTTATCATGGTTATCATACTAATATATATGTTGAGAAAGTATATATTACTTCCAAAGCATACTTAATTTTGTTTTCTTTGTTACCTTAGCATTTAAACTCCTCCAAAGTTCTAAATGCGTTATTCTGTTTCCTCAGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTAACCGAGCCTGGTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGACGAATGA

mRNA sequence

ATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGACCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTAACCGAGCCTGGTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGACGAATGA

Coding sequence (CDS)

ATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGACCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTAACCGAGCCTGGTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGACGAATGA

Protein sequence

MATGKSPTPASQDLQQTNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELTEPGNFVVKEDNNLSLVEYELVNVADE

Homology

[Close]

BLAST of Lag0037865 vs. NCBI nr
Match: XP_038899654.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 290.4 bits (742), Expect = 9.0e-75
Identity = 146/154 (94.81%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQTNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQSNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPGNFVVKEDNNLSLVEYELVNVADE 155
           KWGRIEL EP +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELAEPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Lag0037865 vs. NCBI nr
Match: XP_008463705.1 (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 Nucleic acid-binding [Cucumis melo var. makuwa] >TYK27951.1 Nucleic acid-binding [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 145/154 (94.16%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQTNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQTNAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPGNFVVKEDNNLSLVEYELVNVADE 155
           KWGRIE+ +P +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Lag0037865 vs. NCBI nr
Match: XP_004146043.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical protein Csa_012716 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 145/154 (94.16%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQTNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQTNAA RPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPGNFVVKEDNNLSLVEYELVNVADE 155
           KWGRIEL +P +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Lag0037865 vs. NCBI nr
Match: XP_022139613.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 278.1 bits (710), Expect = 4.6e-71
Identity = 140/154 (90.91%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQTNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS ++QQ+NA ARPGLRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT+I+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPGNFVVKEDNNLSLVEYELVNVADE 155
           KWGRIELTEP NFVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Lag0037865 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 4.5e-66
Identity = 136/154 (88.31%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQTNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPGNFVVKEDNNLSLVEYELVNVADE 155
           KWGRIE+ EP NFVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144

[Close]

BLAST of Lag0037865 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.9e-45
Identity = 92/135 (68.15%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 26  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELTEPGNFVVKEDN 145
           TG ILFTARNDQVD +KPG TVILRN++IDMFKG+MRL VDKWGRIE T   +F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNVADE 155
           NLSLVEYEL+NV  +
Sbjct: 138 NLSLVEYELINVGGD 152

The following BLAST results are available for this feature:

BLAST of Lag0037865 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899654.1	9.0e-75	94.81	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_008463705.1	1.2e-74	94.16	PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 N...	[more]
XP_004146043.1	2.6e-74	94.16	uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical pro...	[more]
XP_022139613.1	4.6e-71	90.91	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_023535412.1	4.5e-66	88.31	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0037865 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	5.9e-45	68.15	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 40..143 e-value: 9.0E-44 score: 149.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 9..154
None	No IPR available	PANTHER	PTHR31472:SF26	SUBFAMILY NOT NAMED	coord: 9..154
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 44..127 e-value: 1.21701E-18 score: 73.4261
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 22..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037865.1	Lag0037865.1	mRNA