Lag0037850 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037850
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 9839165 .. 9839572 (+)
RNA-Seq Expression	Lag0037850
Synteny	Lag0037850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGCCCTTTTGGAGAGGCTACAGAAACAGAGGTTTTGGAATCAGAGGTCGTAACAAAGGTGGATGTAGTTGCAGAGGGGATTACCGGAAAGTGAAGAGGAATTGGAATTGGAATCGGAATCAACAGTCAATTAGGAAGAAGAGGAGTGCTAGTTCGTTTAAAGCTGGAAGAGGGGAATCTCACGGGACTGAGCCTGGATCCTCAGCCGAATCATCGTCATCATCATCTTCATCAGCGGCGGTACCGGAGTCAGGTTATAAACTTCAGTCATACAGGGGAAGAACAAGACGAACGAAACATACAGTATTTATATGCGACGCTAGACTCACAAGCGACCAAGAAGCGGCCGTACTTCCCTCCGGCCTCGGCTTCTACTCCGGTCGGGTGGAGTTTCCAAGATGA

mRNA sequence

ATGGCGGAGCCCTTTTGGAGAGGCTACAGAAACAGAGGTTTTGGAATCAGAGGTCGTAACAAAGGTGGATGTAGTTGCAGAGGGGATTACCGGAAAGTGAAGAGGAATTGGAATTGGAATCGGAATCAACAGTCAATTAGGAAGAAGAGGAGTGCTAGTTCGTTTAAAGCTGGAAGAGGGGAATCTCACGGGACTGAGCCTGGATCCTCAGCCGAATCATCGTCATCATCATCTTCATCAGCGGCGGTACCGGAGTCAGGTTATAAACTTCAGTCATACAGGGGAAGAACAAGACGAACGAAACATACAGTATTTATATGCGACGCTAGACTCACAAGCGACCAAGAAGCGGCCGTACTTCCCTCCGGCCTCGGCTTCTACTCCGGTCGGGTGGAGTTTCCAAGATGA

Coding sequence (CDS)

ATGGCGGAGCCCTTTTGGAGAGGCTACAGAAACAGAGGTTTTGGAATCAGAGGTCGTAACAAAGGTGGATGTAGTTGCAGAGGGGATTACCGGAAAGTGAAGAGGAATTGGAATTGGAATCGGAATCAACAGTCAATTAGGAAGAAGAGGAGTGCTAGTTCGTTTAAAGCTGGAAGAGGGGAATCTCACGGGACTGAGCCTGGATCCTCAGCCGAATCATCGTCATCATCATCTTCATCAGCGGCGGTACCGGAGTCAGGTTATAAACTTCAGTCATACAGGGGAAGAACAAGACGAACGAAACATACAGTATTTATATGCGACGCTAGACTCACAAGCGACCAAGAAGCGGCCGTACTTCCCTCCGGCCTCGGCTTCTACTCCGGTCGGGTGGAGTTTCCAAGATGA

Protein sequence

MAEPFWRGYRNRGFGIRGRNKGGCSCRGDYRKVKRNWNWNRNQQSIRKKRSASSFKAGRGESHGTEPGSSAESSSSSSSSAAVPESGYKLQSYRGRTRRTKHTVFICDARLTSDQEAAVLPSGLGFYSGRVEFPR

Homology

[Close]

BLAST of Lag0037850 vs. NCBI nr
Match: KAG6607904.1 (Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 65/86 (75.58%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MAEPFWRGYRNRGFGIRGRNKGGCSCRGDYRKVKRNWNWNRNQQSIRKKRSASSFKAGRG 60
          MAEPFWRGY N GF IR RN GG + RGDYRK+K      RNQQSIRKK S SSFKAGRG
Sbjct: 1  MAEPFWRGYTNAGFRIRARNNGGSTFRGDYRKLK------RNQQSIRKKSSVSSFKAGRG 60

Query: 61 ESHGTEPGSSAESSSSSSSSAAVPES 87
          ESHGT PGSSAESSSSSSS  A PES
Sbjct: 61 ESHGTGPGSSAESSSSSSS--AEPES 78

[Close]

BLAST of Lag0037850 vs. NCBI nr
Match: KAG7037433.1 (Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 65/86 (75.58%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MAEPFWRGYRNRGFGIRGRNKGGCSCRGDYRKVKRNWNWNRNQQSIRKKRSASSFKAGRG 60
          MAEPFWRGY N GF IR RN GG + RGDYRK+K      RNQQSIRKK S SSFKAGRG
Sbjct: 1  MAEPFWRGYTNAGFRIRARNNGGSTFRGDYRKLK------RNQQSIRKKSSVSSFKAGRG 60

Query: 61 ESHGTEPGSSAESSSSSSSSAAVPES 87
          ESHGT PGSSAESSSSSSS  A PES
Sbjct: 61 ESHGTGPGSSAESSSSSSS--AEPES 78

[Close]

BLAST of Lag0037850 vs. NCBI nr
Match: KAG6591924.1 (Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 50/89 (56.18%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1  MAEPFWRGYRNRGFGIRGRNKGGCSCRGDYRKVKRNWNWNRNQQSIRKKRSASSFKAGRG 60
          MAE FWRG+         R  GG SCR  YRKVKRN N NRNQQSI         +AGRG
Sbjct: 1  MAETFWRGF---------RINGGFSCRSHYRKVKRNRNRNRNQQSI---------QAGRG 60

Query: 61 ESHGTEPGSSAES---SSSSSSSAAVPES 87
           S G+E GS + S   SSSSSSS+AVPES
Sbjct: 61 VSQGSESGSRSSSSPPSSSSSSSSAVPES 71

The following BLAST results are available for this feature:

BLAST of Lag0037850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607904.1	2.1e-19	75.58	Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037433.1	2.1e-19	75.58	Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591924.1	1.8e-07	56.18	Transcription factor TCP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0037850 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037850.1	Lag0037850.1	mRNA