Lag0037819 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037819
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ubiquitin domain-containing protein
Location	chr2: 9517901 .. 9520923 (+)
RNA-Seq Expression	Lag0037819
Synteny	Lag0037819

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGTGAGATTATCCTATTACTAACTTTTTCGTATTCTGTTTGTTTCTCTCGAGATTCTTCTTCTGGGAAATTCAGGATTTCTTCTTCTTTTTCATGCTTAATTCTGGGCTTTTATTGGTTTTCAATACTACGATGAATTTGGCTCTGACCCCACTTTGATGGAGTGGTTAATCGTGTTTGGGTATAGCGTGTATGGAATGTGAGATGAGAATTTGTGGATTTGAACCAGCTTTGTTGTCAAGCGAATCGATTGTTGGCATTTTAGTCTTTGTGATTCACTGATTGATTTTTTAGCTTATAGTGGATGATTGGTTTTCCCCTGAATGTAATTTGGGGTTTTATTGCCTTTCTCGTTTTTAGACATTTGGATTGGAGCTTCTTAAGCATGTAATTGTTGGTATTCAGAAGTTGAGATTCAATCGTTTCTCATTTAGTTGTTGCACTTGATTCGATTGCTTGAGTTTTTAATCGTAAACGTTGTGGACTGTGACATCCTTTCATTATGTTAATGGGACTGCCAAATTAGGGGTGGGAATTGTTTGTATCTCATATACCCCTGCGGTGAGGTGTTAATTCTGCCGATACCCTAGTGGAATCGAGTTTTGAAAACTGTTATGATTCTATTGTTCAATGAGATGATTGAAATGTTCAAAGAAATTCTCGTGGTATTGGGATTTGATGTTAACATTCTTAGCAAGATGGCAACCGTGGTCGCTTCTTATGTTGTAATGTTGCTGTGATGAGTTCTGTCATCAATAATGCCTTTGTTTTTCTTATGAAGTCCACGCATTCAACTTTAATTCTGCAATCATTGTTCATCGGATATTATCATGTTAATGTCAATAGTCATAAGGAACTTATGCCATCCTTTTAGTCACTTGAAGATTCTTTTCAATTCAGGGCCTGTGAAAAAAATTCGGAAGCCTAAACCTTGGAAGCATCCCCAGCCAATAACAAAGACAGATCTTGCGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGGTAATATTGTAAAGTTGAATCTTTTAGATCTTGCACAATATTTCTGGTTATTGGTGTTATTAGATATGATCTAATTCATTGATTTGTATATCATATTTTATAAACAAGGTAACTGTGAGACTAGTATTACTAAAAGAAGTTCTTCATGCTCATGCAAATATATGATTCAGAAAGATGATTGCACCGATTTTATGCGACTTATTGTTGTCAAGGTCATTATGTGTCTGTAAAGAATTCCTAGCCTAGTTAGTCATGATCCATGAGAAGTACTCTATGTTTAGCATAGAATTGGAATTTTTTTATTAGAAAGGAAATTGATTTTGTATTCTGGATCTTCAAAGGCGACCTCTGTCTAAGACTATCAACTATGTTATTAAGTATTTTCCATCACCGCATTTGTTAGAATATTTGTTAGTCAGGGTTATCAAGTCAATCAGAAATACTAACTAGTTCGGAGTGTTAGTTGGTCAGTTCTTCAATTTGAAGGTTCGCTACATATCTCCTAGTTTTGAACTGTAGAGAGATAGATAATGCACAGAATTTTAAACCTCTAGTTAATTTAGCATATGTTCAGCAGAGTGTATATCTTCAATGGAGTAAACCTAGAAGTAGAACAAAATGCACTGCTTCAGTGTGTGCCTGGTCTGTATTAAAATTAATGGATGATACATCTATGCATGAATGTCACCAATAGTTGAATGAAAGTGAGAAGCAGGAATGAAAGTAACGACAAAAAAATGAGGGTGCTGGTTTTTTGGTCCAACGAGTATGCAAATAAACATCTTATATTACCTAATTTTGGCCATTGAAATGATGAAAAGAGGCTTTAATGATAATGTGTATTGAAGCAAGTGGGAGAAATTATCATCAACATTCAAGGCTTTAAGTTCAGTCTCAGATTTTACATGCATTTTGCGAATGAAGCTACACCTCTTCAAGTGGTCATTGCTGAAGTTAGAATATTGAAATGAAGGTTTCACTAGACCATGGCATGCACATTACACCAGACCTGTTCCTAATCATTAGTATAGTTGGTTCTTAACAATGAAAGTTCTTCCTTATCAAAAGGTTACGATGTTGATATGCACGGCTATAGAAATTACTCTCATGCTGGATATTAGCGTGATTCAAGTTTGTGGAGTAAAATATGGATCATTGGTCCTAAGATTGTTTTTTTTTTGAAAGAATTTATCAGTTCTAAATCAAATGTCAGTTTCCTTTTATTATAAATAGATGATTTATTGAATCTGAAATTTGGTTATGAAGCTCAAGATATGCTGCAGGTTTCAAATGGTTCAAAATATCTGAACATGAAAGTAAAGTTTTTGTTTGATGAACAGTTCATATTCACTAGAAGCTGAAATAAGCAAATTCTTTTCCTCATATCTTGATTGTGCTCTGTAGCGTTTATGTTGATTGCTGAAACGATAAAAGTTCTTATTTTGTGAACACTAGAGATCTGGGATGCACTTAGAGCTGCTGCAGAAGCTGATCTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGGTCATTGTACAAAGTGCTGATTTAACAATTTGTTACGACGAAAGAGGTATTTAGACCCGATCCCACTACTTTCATTAATCCAAAAAACACCCCACAACTTTTAAGAATATATACACTGTACCCTGTATAATAATTCTTGGATCTGGGGTCTATTTCAGATTTCTTTGTAAAAGTAGGTTAACAAATAACGTTCTTGGTTTCAGTGGTATTGGGAAACTGGAAATATTATTATATCTTATCCTATTAAAGAATGTCATGAGTATGAATGTGCCATTATTCCAAGTTCTTTATTGCTGAAAGATCTTCCCAATGTTCCCCTTTACATATTTTACTAATGGGTTTAAATTTCCTGCTGTTTATTTCTCAAAACTCAATTGCAGGTGCAAAATACGAATTGCCCAAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGA

mRNA sequence

ATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGCCTGTGAAAAAAATTCGGAAGCCTAAACCTTGGAAGCATCCCCAGCCAATAACAAAGACAGATCTTGCGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGAGATCTGGGATGCACTTAGAGCTGCTGCAGAAGCTGATCTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGGTCATTGTACAAAGTGCTGATTTAACAATTTGTTACGACGAAAGAGGTGCAAAATACGAATTGCCCAAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGA

Coding sequence (CDS)

ATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGCCTGTGAAAAAAATTCGGAAGCCTAAACCTTGGAAGCATCCCCAGCCAATAACAAAGACAGATCTTGCGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGAGATCTGGGATGCACTTAGAGCTGCTGCAGAAGCTGATCTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGGTCATTGTACAAAGTGCTGATTTAACAATTTGTTACGACGAAAGAGGTGCAAAATACGAATTGCCCAAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGA

Protein sequence

MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI

Homology

[Close]

BLAST of Lag0037819 vs. NCBI nr
Match: XP_038898666.1 (ubiquitin domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 226.9 bits (577), Expect = 8.8e-56
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKG+GPVKKIRKPKPWKHPQPI+KTDL RMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGNGPVKKIRKPKPWKHPQPISKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of Lag0037819 vs. NCBI nr
Match: XP_022941497.1 (ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022981235.1 ubiquitin domain-containing protein 1-like [Cucurbita maxima] >XP_023525955.1 ubiquitin domain-containing protein 1-like [Cucurbita pepo subsp. pepo] >KAG6607920.1 Ubiquitin domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037447.1 Ubiquitin domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6607927.1 Ubiquitin domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-55
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDGPVKKIRKPK WKHPQPITKTDLARMRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGA+YELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 111

[Close]

BLAST of Lag0037819 vs. NCBI nr
Match: XP_008463752.1 (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 5.7e-55
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDG VKKIRKPKPWK+PQPITKTDL RMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of Lag0037819 vs. NCBI nr
Match: XP_022144511.1 (ubiquitin domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 224.2 bits (570), Expect = 5.7e-55
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDGPVKKIRKPK WKHPQPITKT+L +MRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of Lag0037819 vs. NCBI nr
Match: XP_004146021.1 (ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN55055.1 hypothetical protein Csa_012079 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 7.4e-55
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDG VKKIRKPKPWK+PQPITKTDL RMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

[Close]

BLAST of Lag0037819 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-23
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 2   GCAGSSQAKGDGPVKKIRKPKP-WKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALR 61
           G    +Q K  G  + ++K KP WK   P+T+  L   RDEFWDTAP + GRKEIWDAL+
Sbjct: 14  GRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALK 73

Query: 62  AAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           AAA A    D  LAQAIVD A + +    LT CYDE G +Y+LP Y L+ P NLI
Sbjct: 74  AAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLI 128

[Close]

BLAST of Lag0037819 vs. ExPASy Swiss-Prot
Match: Q6GL38 (Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-22
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 4   AGSSQAKGDGPVKKIRKPKP-WKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALRAA 63
           A   Q K  G  + ++K +P WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AA
Sbjct: 19  ASGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAA 78

Query: 64  AEA----DLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           A A    D  LAQAIVD A + +    LT CYDE G +Y+LP Y L+ P NLI
Sbjct: 79  AFAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVYCLAPPVNLI 131

[Close]

BLAST of Lag0037819 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-22
Identity = 58/111 (52.25%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 5   GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALRAAAE 64
           G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA+
Sbjct: 21  GTGVALGRNQPLKREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAQ 80

Query: 65  A----DLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y LS P N+I
Sbjct: 81  AFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMI 130

[Close]

BLAST of Lag0037819 vs. ExPASy Swiss-Prot
Match: Q5EAE3 (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.0e-22
Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 5   GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALRAAAE 64
           G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 65  A----DLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N+I
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]

BLAST of Lag0037819 vs. ExPASy Swiss-Prot
Match: Q8WUN7 (Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 5.0e-22
Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 5   GSSQAKGDGPVKKIRKPKPWKHPQPITKTDLARMRDEFWDTAPHYGGRKEIWDALRAAAE 64
           G+  A G     K  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 65  A----DLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 112
           A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N+I
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

The following BLAST results are available for this feature:

BLAST of Lag0037819 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898666.1	8.8e-56	97.30	ubiquitin domain-containing protein 1-like [Benincasa hispida]	[more]
XP_022941497.1	2.6e-55	97.30	ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022981235.1 ...	[more]
XP_008463752.1	5.7e-55	96.40	PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo]	[more]
XP_022144511.1	5.7e-55	96.40	ubiquitin domain-containing protein 1-like [Momordica charantia]	[more]
XP_004146021.1	7.4e-55	95.50	ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN55055.1 hypothetical...	[more]

BLAST of Lag0037819 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4V8W7	3.5e-23	51.30	Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1	[more]
Q6GL38	1.0e-22	51.33	Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=...	[more]
Q6DG43	1.0e-22	52.25	Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1	[more]
Q5EAE3	5.0e-22	51.35	Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1	[more]
Q8WUN7	5.0e-22	51.35	Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038169	DC-UbP/UBTD2, N-terminal domain superfamily	GENE3D	1.20.225.20		coord: 31..104 e-value: 3.5E-28 score: 99.7
IPR032752	DC-UbP/UBTD2, N-terminal domain	PFAM	PF16455	UBD	coord: 16..111 e-value: 4.4E-35 score: 119.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR13609:SF25	BINDING PROTEIN, PUTATIVE-RELATED	coord: 1..110
IPR039869	Ubiquitin domain-containing protein 1/2	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037819.1	Lag0037819.1	mRNA