Lag0037785 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037785
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr2: 9143808 .. 9144850 (+)
RNA-Seq ExpressionLag0037785
SyntenyLag0037785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGGCGTTTTTTCACTGAGGACAAATCTCTTTGGAGGAAATTCATAAGTGCTAAATATTCCAGCTCTCATCACAAGAGTTTTCCCTCTAGCAGCAGATTTTCTAGCTCCAGATCTCCGTGGTTTGCTATTTCAAAACTTCAGTTTCCTTTCTTCGCAAATTTCAGATGGGAGGTGCGCAATGGTAAATCCATTCTCTTTTGGCATGATAACTGGTCTGTTCTTGGTCCTTTGAAATATGTTAATGATCGCCTCTATCAGTTATCTTCAAACAAAAGTCTCACAGTTGAGGAAGCTTGGTCGAATTTGGATAGAGAGTGGAATTTTCGTCCTCGTCGGCCTCTTTTGATAGAGAGATTCAAAGTTGGAATGAGATGACTAGTCTTTTACCCATTCCGGATTCTTTTCGTGGTTCTGATGTTCATCGTTGGCTTGCTTCTGAAGACGGTTCCTTCTCCACAAAAGCTGCTCGATCCGTCCTTTTGGTTGCTCCTTCTAGACCTTTTTACAGCCTTGGAGAAAAAATTCTCGAGAACCTTTGGAAAGCTGATATCCCTAAAAAAAATAAAGGTTTTCATCTGGTCCCTTTTCATAGAAGTGTCAACACGACTGACAGGCTTCAGAAAATTTTTCGAGGCTCGTACTTCAATCCTTCCATCTGCCTCCTTTGCAGAATGAGTTCCAAAAGTATCGATCATCTATTCATTCATTGTTGTTGTGTGTCCTTTCTTCGAAATAAGATTTACCAAGCTTTGGGTGTTCTTTCTGCTCCTCCGGCAACGATTCAATCCCTTTGCGAAGATTTGCTAGCTTTTAAAGCTTCATCCCAAAGACAAATTCTTCTCAGAAATATTTCTTTTGCCTCCCTTTGGATTGTGTGGAATGAACGCAACAATCGTATTTTTCAGGATAAGGTTCGCAGCGGGATTCAACTTTGGGAGGATGTCGTTTCTCTTGCCGCTCTTTGGACTAAAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTATTATTGCTTTAAACTGGGAATCCTTTTTGTAG

mRNA sequence

ATGATATGGCGTTTTTTCACTGAGGACAAATCTCTTTGGAGGAAATTCATAAGTGCTAAATATTCCAGCTCTCATCACAAGAGTTTTCCCTCTAGCAGCAGATTTTCTAGCTCCAGATCTCCGTGGTTTGCTATTTCAAAACTTCAGTTTCCTTTCTTCGCAAATTTCAGATGGGAGAGAGTGGAATTTTCGTCCTCGTCGGCCTCTTTTGATAGAGAGATTCAAAGTTGGAATGAGATGACTAGTCTTTTACCCATTCCGGATTCTTTTCGTGGTTCTGATGTTCATCGTTGGCTTGCTTCTGAAGACGGTTCCTTCTCCACAAAAGCTGCTCGATCCGTCCTTTTGGTTGCTCCTTCTAGACCTTTTTACAGCCTTGGAGAAAAAATTCTCGAGAACCTTTGGAAAGCTGATATCCCTAAAAAAAATAAAGGTTTTCATCTGGTCCCTTTTCATAGAAGTGTCAACACGACTGACAGGCTTCAGAAAATTTTTCGAGGCTCGTACTTCAATCCTTCCATCTGCCTCCTTTGCAGAATGAGTTCCAAAAGTATCGATCATCTATTCATTCATTGTTGTTGTGTGTCCTTTCTTCGAAATAAGATTTACCAAGCTTTGGGTGTTCTTTCTGCTCCTCCGGCAACGATTCAATCCCTTTGCGAAGATTTGCTAGCTTTTAAAGCTTCATCCCAAAGACAAATTCTTCTCAGAAATATTTCTTTTGCCTCCCTTTGGATTGTGTGGAATGAACGCAACAATCGTATTTTTCAGGATAAGGTTCGCAGCGGGATTCAACTTTGGGAGGATGTCGTTTCTCTTGCCGCTCTTTGGACTAAAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTATTATTGCTTTAAACTGGGAATCCTTTTTGTAG

Coding sequence (CDS)

ATGATATGGCGTTTTTTCACTGAGGACAAATCTCTTTGGAGGAAATTCATAAGTGCTAAATATTCCAGCTCTCATCACAAGAGTTTTCCCTCTAGCAGCAGATTTTCTAGCTCCAGATCTCCGTGGTTTGCTATTTCAAAACTTCAGTTTCCTTTCTTCGCAAATTTCAGATGGGAGAGAGTGGAATTTTCGTCCTCGTCGGCCTCTTTTGATAGAGAGATTCAAAGTTGGAATGAGATGACTAGTCTTTTACCCATTCCGGATTCTTTTCGTGGTTCTGATGTTCATCGTTGGCTTGCTTCTGAAGACGGTTCCTTCTCCACAAAAGCTGCTCGATCCGTCCTTTTGGTTGCTCCTTCTAGACCTTTTTACAGCCTTGGAGAAAAAATTCTCGAGAACCTTTGGAAAGCTGATATCCCTAAAAAAAATAAAGGTTTTCATCTGGTCCCTTTTCATAGAAGTGTCAACACGACTGACAGGCTTCAGAAAATTTTTCGAGGCTCGTACTTCAATCCTTCCATCTGCCTCCTTTGCAGAATGAGTTCCAAAAGTATCGATCATCTATTCATTCATTGTTGTTGTGTGTCCTTTCTTCGAAATAAGATTTACCAAGCTTTGGGTGTTCTTTCTGCTCCTCCGGCAACGATTCAATCCCTTTGCGAAGATTTGCTAGCTTTTAAAGCTTCATCCCAAAGACAAATTCTTCTCAGAAATATTTCTTTTGCCTCCCTTTGGATTGTGTGGAATGAACGCAACAATCGTATTTTTCAGGATAAGGTTCGCAGCGGGATTCAACTTTGGGAGGATGTCGTTTCTCTTGCCGCTCTTTGGACTAAAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTATTATTGCTTTAAACTGGGAATCCTTTTTGTAG

Protein sequence

MIWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERVEFSSSSASFDREIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNRIFQDKVRSGIQLWEDVVSLAALWTKKSKAFSDYSASIIALNWESFL
Homology
BLAST of Lag0037785 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-36
Identity = 105/346 (30.35%), Postives = 162/346 (46.82%), Query Frame = 0

Query: 2    IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
            +W+F TE   LW++ I +KY      SFPS  +FSS+ SPW A+++    F+ N  W   
Sbjct: 801  LWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVN 860

Query: 62   --ERVEF---------------------------------SSSSASF---------DREI 121
              E + F                                 + SS  +         D E 
Sbjct: 861  DGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEE 920

Query: 122  QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
              W+ + + LP P   RG     W  + +  F T + +  +  AP  P  +    + + L
Sbjct: 921  NLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISP-ANFHPNLYKTL 980

Query: 182  WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
            WK + PKK K F     H  +NT DRLQK       +P+ C +C  S + I+HLFIHC  
Sbjct: 981  WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 1040

Query: 242  VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
               L +K  +AL   ++ P  +QSL +++ +    +Q+ ++  N +   LW +W ERNNR
Sbjct: 1041 SQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNR 1100

BLAST of Lag0037785 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-35
Identity = 104/346 (30.06%), Postives = 159/346 (45.95%), Query Frame = 0

Query: 2   IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
           +W+F TE + LW++ I +KY       FPS  ++SS+ SPW A++     F+ N  W   
Sbjct: 599 LWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVN 658

Query: 62  --ERVEF------SSSSASF------------------------------------DREI 121
             E + F       +S  S                                     D E 
Sbjct: 659 DGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEK 718

Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
             W+ + + LP P   RG     W  + +  F T + +  L  A + P  +    + + L
Sbjct: 719 NLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP-TNFHPSLYKTL 778

Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
           WK D PKK K F     H  +NT DRLQK       +P+ C +C  S + I+HLFIHC  
Sbjct: 779 WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 838

Query: 242 VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
              L +K  QAL   ++ P  ++SL +++ +    +Q+ ++  N     LW +W ERNNR
Sbjct: 839 SQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNR 898

BLAST of Lag0037785 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-35
Identity = 104/346 (30.06%), Postives = 159/346 (45.95%), Query Frame = 0

Query: 2    IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
            +W+F TE + LW++ I +KY       FPS  ++SS+ SPW A++     F+ N  W   
Sbjct: 693  LWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVN 752

Query: 62   --ERVEF------SSSSASF------------------------------------DREI 121
              E + F       +S  S                                     D E 
Sbjct: 753  DGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEK 812

Query: 122  QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
              W+ + + LP P   RG     W  + +  F T + +  L  A + P  +    + + L
Sbjct: 813  NLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASP-TNFHPSLYKTL 872

Query: 182  WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
            WK D PKK K F     H  +NT DRLQK       +P+ C +C  S + I+HLFIHC  
Sbjct: 873  WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 932

Query: 242  VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
               L +K  QAL   ++ P  ++SL +++ +    +Q+ ++  N     LW +W ERNNR
Sbjct: 933  SQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNR 992

BLAST of Lag0037785 vs. NCBI nr
Match: KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 1.0e-34
Identity = 108/343 (31.49%), Postives = 156/343 (45.48%), Query Frame = 0

Query: 2   IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISK-------------- 61
           +WR+  E  SLW+K I AKY+ +H    P   R SS+ SPW AI K              
Sbjct: 428 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMAN 487

Query: 62  -------------------LQFP---FFANFRWERVEFSSSSASFD-----------REI 121
                              LQFP     +N +   V+      S D           RE 
Sbjct: 488 DGSSLSFWHSKWHNNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQ 547

Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
           Q+W+ +   LP   + RG     W  S+   ++  +A+ +     S P  +  EK L++L
Sbjct: 548 QTWDSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHL 607

Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
           W++ IP+K K F     H+ +NT D++QK       NPS C+ CR S++ ++HLFI C  
Sbjct: 608 WRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC-- 667

Query: 242 VSFLRNKIYQALGVLSAPPAT--IQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
             F RN           P AT  ++ LC  L      + + I+  N + A+LW +W  RN
Sbjct: 668 -PFARNLWNMWSSETGTPMATTNVKDLCLQLCRQSDRNTKNIISFNSAIATLWTIWIRRN 727

BLAST of Lag0037785 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-33
Identity = 102/343 (29.74%), Postives = 151/343 (44.02%), Query Frame = 0

Query: 2    IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERV 61
            +WR+  E  SLW+K I AKY+ +H    P   R SS+ SPW AI K +  + +   W  +
Sbjct: 1481 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISW--L 1540

Query: 62   EFSSSSASF-------------------------------------------------DR 121
                SS SF                                                 +R
Sbjct: 1541 PNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNER 1600

Query: 122  EIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILE 181
            E Q+W+ +   LP   + RG     W  S+   ++  +A+ +     S P  +  EK L+
Sbjct: 1601 EQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELK 1660

Query: 182  NLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHC 241
            +LW++ IP+K K F     H+ +NT D +QK       NPS C+ CR S++ ++HLFI C
Sbjct: 1661 HLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC 1720

Query: 242  CCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
                 L N      G        ++ LC  L      + + I+  N + A+LW +W  RN
Sbjct: 1721 PFARSLWNMWSSETGT-PMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRN 1780

BLAST of Lag0037785 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-37
Identity = 105/346 (30.35%), Postives = 162/346 (46.82%), Query Frame = 0

Query: 2    IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRW--- 61
            +W+F TE   LW++ I +KY      SFPS  +FSS+ SPW A+++    F+ N  W   
Sbjct: 801  LWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVN 860

Query: 62   --ERVEF---------------------------------SSSSASF---------DREI 121
              E + F                                 + SS  +         D E 
Sbjct: 861  DGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEE 920

Query: 122  QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
              W+ + + LP P   RG     W  + +  F T + +  +  AP  P  +    + + L
Sbjct: 921  NLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISP-ANFHPNLYKTL 980

Query: 182  WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
            WK + PKK K F     H  +NT DRLQK       +P+ C +C  S + I+HLFIHC  
Sbjct: 981  WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 1040

Query: 242  VSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERNNR 301
               L +K  +AL   ++ P  +QSL +++ +    +Q+ ++  N +   LW +W ERNNR
Sbjct: 1041 SQQLWSKA-KALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNR 1100

BLAST of Lag0037785 vs. ExPASy TrEMBL
Match: A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.0e-35
Identity = 108/343 (31.49%), Postives = 156/343 (45.48%), Query Frame = 0

Query: 2   IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISK-------------- 61
           +WR+  E  SLW+K I AKY+ +H    P   R SS+ SPW AI K              
Sbjct: 428 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMAN 487

Query: 62  -------------------LQFP---FFANFRWERVEFSSSSASFD-----------REI 121
                              LQFP     +N +   V+      S D           RE 
Sbjct: 488 DGSSLSFWHSKWHNNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNEREQ 547

Query: 122 QSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILENL 181
           Q+W+ +   LP   + RG     W  S+   ++  +A+ +     S P  +  EK L++L
Sbjct: 548 QTWDSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHL 607

Query: 182 WKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHCCC 241
           W++ IP+K K F     H+ +NT D++QK       NPS C+ CR S++ ++HLFI C  
Sbjct: 608 WRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC-- 667

Query: 242 VSFLRNKIYQALGVLSAPPAT--IQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
             F RN           P AT  ++ LC  L      + + I+  N + A+LW +W  RN
Sbjct: 668 -PFARNLWNMWSSETGTPMATTNVKDLCLQLCRQSDRNTKNIISFNSAIATLWTIWIRRN 727

BLAST of Lag0037785 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 102/343 (29.74%), Postives = 151/343 (44.02%), Query Frame = 0

Query: 2    IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERV 61
            +WR+  E  SLW+K I AKY+ +H    P   R SS+ SPW AI K +  + +   W  +
Sbjct: 1481 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISW--L 1540

Query: 62   EFSSSSASF-------------------------------------------------DR 121
                SS SF                                                 +R
Sbjct: 1541 PNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNER 1600

Query: 122  EIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILE 181
            E Q+W+ +   LP   + RG     W  S+   ++  +A+ +     S P  +  EK L+
Sbjct: 1601 EQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELK 1660

Query: 182  NLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHC 241
            +LW++ IP+K K F     H+ +NT D +QK       NPS C+ CR S++ ++HLFI C
Sbjct: 1661 HLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC 1720

Query: 242  CCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
                 L N      G        ++ LC  L      + + I+  N + A+LW +W  RN
Sbjct: 1721 PFARSLWNMWSSETGT-PMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRN 1780

BLAST of Lag0037785 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 102/343 (29.74%), Postives = 151/343 (44.02%), Query Frame = 0

Query: 2    IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPFFANFRWERV 61
            +WR+  E  SLW+K I AKY+ +H    P   R SS+ SPW AI K +  + +   W  +
Sbjct: 1481 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISW--L 1540

Query: 62   EFSSSSASF-------------------------------------------------DR 121
                SS SF                                                 +R
Sbjct: 1541 PNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNER 1600

Query: 122  EIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLLVAPSRPFYSLGEKILE 181
            E Q+W+ +   LP   + RG     W  S+   ++  +A+ +     S P  +  EK L+
Sbjct: 1601 EQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELK 1660

Query: 182  NLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHLFIHC 241
            +LW++ IP+K K F     H+ +NT D +QK       NPS C+ CR S++ ++HLFI C
Sbjct: 1661 HLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFC 1720

Query: 242  CCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILLRNISFASLWIVWNERN 296
                 L N      G        ++ LC  L      + + I+  N + A+LW +W  RN
Sbjct: 1721 PFARSLWNMWSSETGT-PMVNTNVKDLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRN 1780

BLAST of Lag0037785 vs. ExPASy TrEMBL
Match: A0A5A7VIU9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00940 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.5e-31
Identity = 92/303 (30.36%), Postives = 142/303 (46.86%), Query Frame = 0

Query: 2   IWRFFTEDKSLWRKFISAKYSSSHHKSFPSSSRFSSSRSPWFAISKLQFPF-FANFRWER 61
           +WR+  E  SLW+K I AKY+ +H    P  + F +   P        FPF      W++
Sbjct: 221 LWRYHNESNSLWKKCIDAKYTKNHQGDIPVVAGFPTMAPP--------FPFATVKEVWDQ 280

Query: 62  V----EFSSSSASFDREIQSWNEMTSLLPIPDSFRGSDVHRWLASEDGSFSTKAARSVLL 121
                  +      +RE   W  +   LP   S RG     W  S+   +S  +A+ +  
Sbjct: 281 STDGWNINPRRPLNERENHIWESIKMSLPQIHSNRGISKPLWKPSDSNVYSVASAKDLAF 340

Query: 122 VAPSRPFYSLGEKILENLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICL 181
              S P  +  EK L++LW++ IP+K K F     H+ +NT D +QK       NP+ C+
Sbjct: 341 KETSIPRETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMCLNPNWCI 400

Query: 182 LCRMSSKSIDHLFIHCCCVSFLRNKIYQALGVLSAPPATIQSLCEDLLAFKASSQRQILL 241
            CR S++ ++HLFI C       N      G+  A    ++ LC  L      + + I+ 
Sbjct: 401 SCRSSNEDMNHLFILCPTAHRFWNLWSSETGIPMA-NTNVKDLCLSLCRLTGGNAKNIIS 460

Query: 242 RNISFASLWIVWNERNNRIFQDKVRSGIQLWEDVVSLAALWTKKSKAFSDYSASIIALNW 300
            N + A+LW +W  RNN +F +K  S    WED+ +L   W+ KSK   +YS + +ALN 
Sbjct: 461 FNAARATLWTIWIRRNNLLFAEKDSSYQNAWEDICTLTGSWSSKSKILKNYSQATLALNI 514

BLAST of Lag0037785 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 6.3e-06
Identity = 42/155 (27.10%), Postives = 64/155 (41.29%), Query Frame = 0

Query: 129 KILENLWKADIPKKNKGFHLVPFHRSVNTTDRLQKIFRGSYFNPSICLLCRMSSKSIDHL 188
           +I   +WK     K K F       ++ T D L+   R    N   C  C    ++  HL
Sbjct: 13  EIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLK---RRHIRNHPQCHRCCQEDETSQHL 72

Query: 189 FIHCCCVSFLRNKIYQALGV----LSAPPATIQSLCEDLLAFKASSQRQILLRNISFASL 248
           F  C    F   ++++A G+    L     T+++  E LL     + RQ  L N++   L
Sbjct: 73  FFDC----FYAQQVWRASGIPHQELRTTGITMETKME-LLLSSCLANRQPQLFNLAIWIL 132

Query: 249 WIVWNERNNRIFQDK----------VRSGIQLWED 270
           W +W  RN  +FQ K           R+ +Q WED
Sbjct: 133 WRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWED 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039950.11.9e-3630.35LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
KAA0044556.12.7e-3530.06LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.12.7e-3530.06LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0056839.11.0e-3431.49LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... [more]
TYK08190.12.5e-3329.74LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T9I79.1e-3730.35LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7UTI65.0e-3531.49LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7US621.2e-3329.74LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CA171.2e-3329.74LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7VIU97.5e-3130.36LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
AT3G25270.16.3e-0627.10Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 129..195
e-value: 9.7E-7
score: 29.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037785.1Lag0037785.1mRNA