Lag0037751 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037751
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GATA transcription factor
Location	chr2: 8795033 .. 8795505 (-)
RNA-Seq Expression	Lag0037751
Synteny	Lag0037751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTTTCTCAACAAGACGATTTTTGGTGGAGAAAATTTTGGGTTTGAACGGAGCTAATCTCGTCGCCGGCGAGGAGTTTGAGGTCGACGAGTTTTTGAACTTCTCTAATGGTGATTTCGAACATGGGTCTGATTTGAGAGCTCAGGAAGATGACGATTACGATGAGTTTGAGAAGAATCGGGTCTCTGTTTTGTTGGATTCGAACCAGTCCGGCGAGTTTTCGGACGTCGGAGAGGACGATTCGAACACGCTTCTCGCCGTTGAGCTTGCTATTCCGGTAAATTAATTTCTGGGTTTTTTGTTTTGGTTCGATTTCAGAAGTATATAGTGGAACAAAAAATTGAAATCGAAATCCCCCAGGGCGATGCTCTCGCGACCGCACCCCTTTTTTCAAACAAATCCTCCCGCCCCACCCCCACCACCGTCTTCTTCAAACCCCGCCGCTACAACCCTTATTCTTCTTCTTAG

mRNA sequence

ATGAAACCTTTCTCAACAAGACGATTTTTGGTGGAGAAAATTTTGGGTTTGAACGGAGCTAATCTCGTCGCCGGCGAGGAGTTTGAGGTCGACGAGTTTTTGAACTTCTCTAATGGTGATTTCGAACATGGGTCTGATTTGAGAGCTCAGGAAGATGACGATTACGATGAGTTTGAGAAGAATCGGGTCTCTGTTTTGTTGGATTCGAACCAGTCCGGCGAGTTTTCGGACGTCGGAGAGGACGATTCGAACACGCTTCTCGCCGTTGAGCTTGCTATTCCGGGCGATGCTCTCGCGACCGCACCCCTTTTTTCAAACAAATCCTCCCGCCCCACCCCCACCACCGTCTTCTTCAAACCCCGCCGCTACAACCCTTATTCTTCTTCTTAG

Coding sequence (CDS)

ATGAAACCTTTCTCAACAAGACGATTTTTGGTGGAGAAAATTTTGGGTTTGAACGGAGCTAATCTCGTCGCCGGCGAGGAGTTTGAGGTCGACGAGTTTTTGAACTTCTCTAATGGTGATTTCGAACATGGGTCTGATTTGAGAGCTCAGGAAGATGACGATTACGATGAGTTTGAGAAGAATCGGGTCTCTGTTTTGTTGGATTCGAACCAGTCCGGCGAGTTTTCGGACGTCGGAGAGGACGATTCGAACACGCTTCTCGCCGTTGAGCTTGCTATTCCGGGCGATGCTCTCGCGACCGCACCCCTTTTTTCAAACAAATCCTCCCGCCCCACCCCCACCACCGTCTTCTTCAAACCCCGCCGCTACAACCCTTATTCTTCTTCTTAG

Protein sequence

MKPFSTRRFLVEKILGLNGANLVAGEEFEVDEFLNFSNGDFEHGSDLRAQEDDDYDEFEKNRVSVLLDSNQSGEFSDVGEDDSNTLLAVELAIPGDALATAPLFSNKSSRPTPTTVFFKPRRYNPYSSS

Homology

[Close]

BLAST of Lag0037751 vs. NCBI nr
Match: XP_023007305.1 (GATA transcription factor 5-like [Cucurbita maxima] >XP_023007306.1 GATA transcription factor 5-like [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-27
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 10  LVEKILGLNGANLVAGEEFEVDEFLNFSNGDFEHGSDLRAQEDDDYDEFEKNRVSVLLDS 69
           LVE+I  LNGANLVAGEEFEVDEF NFSNGDFEHGS LR +E+DDY EFEK+ VSV  DS
Sbjct: 27  LVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYQEFEKDLVSVSSDS 86

Query: 70  NQSGEFSDVGEDDSNTLLAVELAIPGDALA 100
           NQSGE    GE+DS +LLAVELAIPGDALA
Sbjct: 87  NQSGEIPAAGEEDSKSLLAVELAIPGDALA 116

[Close]

BLAST of Lag0037751 vs. NCBI nr
Match: KAG7035058.1 (GATA transcription factor 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-27
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 10  LVEKILGLNGANLVAGEEFEVDEFLNFSNGDFEHGSDLRAQEDDDYDEFEKNRVSVLLDS 69
           LVE+I  LNGANLVAGEEFEVDEF NFSNGDFEHGS LR +E+DDY EFEK+ VSV  DS
Sbjct: 27  LVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYHEFEKDLVSVSSDS 86

Query: 70  NQSGEFSDVGEDDSNTLLAVELAIPGDALA 100
           NQSGE    GE+DS +LLAVELAIPGDA+A
Sbjct: 87  NQSGEIPAAGEEDSKSLLAVELAIPGDAMA 116

[Close]

BLAST of Lag0037751 vs. NCBI nr
Match: KAG6605045.1 (GATA transcription factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 7.6e-27
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 10  LVEKILGLNGANLVAGEEFEVDEFLNFSNGDFEHGSDLRAQEDDDYDEFEKNRVSVLLDS 69
           LVE+I  LNGANLVAGEEFEVDEF NFSNGDFEHGS LR +E+DDY EFEK+ VSV  DS
Sbjct: 27  LVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKDLVSVSSDS 86

Query: 70  NQSGEFSDVGEDDSNTLLAVELAIPGDALA 100
           NQSGE    GE+DS +LLAVELAIPGDA+A
Sbjct: 87  NQSGEIPAAGEEDSKSLLAVELAIPGDAMA 116

[Close]

BLAST of Lag0037751 vs. NCBI nr
Match: XP_022948191.1 (GATA transcription factor 5-like [Cucurbita moschata] >XP_022948192.1 GATA transcription factor 5-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 7.6e-27
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 10  LVEKILGLNGANLVAGEEFEVDEFLNFSNGDFEHGSDLRAQEDDDYDEFEKNRVSVLLDS 69
           LVE+I  LNGANLVAGEEFEVDEF NFSNGDFEHGS LR +E+DDY EFEK+ VSV  DS
Sbjct: 27  LVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKDLVSVSSDS 86

Query: 70  NQSGEFSDVGEDDSNTLLAVELAIPGDALA 100
           NQSGE    GE+DS +LLAVELAIPGDA+A
Sbjct: 87  NQSGEIPAAGEEDSKSLLAVELAIPGDAMA 116

[Close]

BLAST of Lag0037751 vs. NCBI nr
Match: XP_023532489.1 (GATA transcription factor 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 10  LVEKILGLNGANLVAGEEFEVDEFLNFSNGDFEHGSDLRAQEDDDYDEFEKNRVSVLLDS 69
           LVE+I  LNGANLVAGE+FEVDEF NFSNGDFEHGS LR +E+DDY EFEK+ VSV  DS
Sbjct: 39  LVEEIWCLNGANLVAGEDFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKDLVSVSSDS 98

Query: 70  NQSGEFSDVGEDDSNTLLAVELAIPGDALA 100
           NQSGE    GE+DS +LLAVELAIPGDA+A
Sbjct: 99  NQSGEIPAAGEEDSKSLLAVELAIPGDAMA 128

The following BLAST results are available for this feature:

BLAST of Lag0037751 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007305.1	2.6e-27	77.78	GATA transcription factor 5-like [Cucurbita maxima] >XP_023007306.1 GATA transcr...	[more]
KAG7035058.1	5.8e-27	76.67	GATA transcription factor 5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605045.1	7.6e-27	76.67	GATA transcription factor 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022948191.1	7.6e-27	76.67	GATA transcription factor 5-like [Cucurbita moschata] >XP_022948192.1 GATA trans...	[more]
XP_023532489.1	1.7e-26	75.56	GATA transcription factor 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0037751 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037751.1	Lag0037751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding