Lag0037750 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037750
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	UBN2_3 domain-containing protein
Location	chr2: 8792443 .. 8794972 (-)
RNA-Seq Expression	Lag0037750
Synteny	Lag0037750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGGTTCCTTTTTTCTCAGATCTGAAGATGGGAGCGGATTCAGGCACACGCGAGAGGAAGAGAGGGTGAAGAGGGGTTCGGATTTTGAAGAAGAAGGAGCTCCGGCGACGACATGGAAGGGCTTCGGCGGCGGGGAGAAGAAGAGAGAAGGTGGGGGCGGCGGGAGAAGAATAGAGGGGAAGGTGGGGGAGTAGGAGAGAGAAGTTTCTTTTTTAAAAAAATAATAATAATGATTTTTTATTATATTTTATTTTATTATATTTTAATAATAATAATTATTATTTTATTATTATTTTAATTAAAAATCATTATTTTATTATTTTAAAATGCCACGTCAGCCCTAGAGGGACTCAATAGAAACATTTCCAGAACAGTAGGGACTTGATTGTTCGATTTTGAAACCTAGGGACCTATTAGAAACTGACTCGAAACATGAGGGACCAAAAAGGTATTTTACCCTATAATATTTTATGAACATTGATACTCACTTTTTAAAGCTGGCTATTACTAAATGCAATTAACCTTTAGAAAATTCACAACTAGATATAAATTGGAAGTTTAGAGTCTCAATGGACATAAAATTCAATTTTATATTTAGTAGATTGCCAATTTTCAAAAAACTAGAATATGTCATGAATCTATTAAACACAAAATTGAAAGTTTATATATTTATTAGACATTTTAAAGTTTAGAAATCTATTAGACACAAAATTCAAAGTTTAGATGTCCATTAGACATTTTTTAAAGTTCATAACCAAGTTGACACAACTCTAAAAGTTCAGAGACTAAACTTGTAATTTAATCAAAAAAAAAAAAAAAAAAACATATTCGTGAAGAAAGTCTTATCCGCCAAACAGTTTTATCCGTGGAAGAAAATGGAGCCACCCGAACTTTTTTTTTTTTTGAAATAAGGAGCCACCCGAACTTAAGTTCACATACACGCCTTTGAATATTGATTATTGAAGATGTAACAACTAAGGGTGTGTTTGGTTTAACTTTTCAAGTGTTTAATTTTTTAAAATAAATTATTTTGAAAAAATTTCTAGTGTTTGCCAACCACTATAAATGACTTATTAGAAAATGAGATTTATAAATGCATCATTTTGAGAAAAACACTTGAAACCAACTTTTTTAAAAAAACTTCTTAGGTAAATAATAACTTGTGTATAAAAAACACCTATGAGGAAATGCAACCAAACATATGTGTGTTTAAATTCTAAACAATTTTTATACAAAATGTTTTTTAAAAAATGCATTCTTGAAAAACATTTAAATCAAAATGTATTCCAAACGAACCCTAAATCTTTCAATAAAAACTTATTGAAATTTTAAATTATAGTAAACAAGAAAATAAAGCCGATAGTACATCAACAAATAAATAAATAACGAATAACGCCCATAGAACTCCCCAATCTTATTTTTTTTAAAAAAAAAAACAAGATTCAATTTGATTTCAATTAAAAAAAATTAATGGTAGATCTCAATAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAATATGAACATAGCTCAACTAGCATAAGTATTATACTAGCATGTACCTTTGACCAAGAAGCCAAAAGTTCAAAATCTCCTACTTGCATTAAAAACCAAAAATGATGCAGATTTAGTGATAATTAGTATGTTATTCCTTCCTTTAAATTTAGAGGTTCAAATCTTAAAACCAATAAAAAAAACATATTTAACCTCTAATATTAGGCTGACTAACTTTTTTCTTAAGATACAAATGTCATAGGTACATCTTAGATGAACTTAGTTTGGTAGTAATTAGTATGTATTTCTTCCTTTAAAGTTAGAGGTTCATATTAAGGAACCGAGTCACAGTGCCAGCTCAGCATCACCATCCAAGTCAGCCAGTACACGTCAAGGAACCAATTCATAATATAATCCAGAAGCTTCCCTCCAACGGTTTCTGTTTTCTAAGATTCTGATTATTTGTCCGTTTGTGAATTCTTTGGACATGTGTCCCTAATTCCTGTATTGTGTAGGAAATTCAGTATTTGCCCTAAGGGCTCCTCTGTATAAATGCAGCACGTCTGCTACAGTATATTCATTGAGGAAATTACAAAGAAATCTTCCAGATATTAAAATTCTATTTTGGTATCAGAGCACAATGGCCAACGCCTCATCAATGTCGTCTACATCAGTGACCAACGTAGGCAATACAACATTCACCAGTCCACCGCTCAATCAATTATTGAATCAGATTACCACTATCAAGCTGGATCGTGGAAATTACCTCCTCTGGAAGAATCTGGCAATGCCCATCCTTCGCAGCTATAAACTGAAGGTCATCTACTGGGAACAAAATCATGTCCCCCAGAATTTATTCGCCAAGATGGTGAACCAGTCGAAGTCACTTCTGGAGCAGCTATCGGAGCACCCAGCTCTCAAACTGATGGAAGTGGTGCTTCCACATCTGAAGCAAGACTATCGATGA

mRNA sequence

ATGGGTTTTGGTTCCTTTTTTCTCAGATCTGAAGATGGGAGCGGATTCAGGCACACGCGAGAGGAAGAGAGGGTGAAGAGGGGTTCGGATTTTGAAGAAGAAGGAGCTCCGGCGACGACATGGAAGGGCTTCGGCGGCGGGGAGAAGAAGAGAGAAGGTGGGGGCGGCGGGAGAAGAATAGAGGGGAAGAGGTTCATATTAAGGAACCGAGTCACAGTGCCAGCTCAGCATCACCATCCAAGTCAGCCAGTACACGTCAAGGAACCAATTCATAATATAATCCAGAAGCTTCCCTCCAACGGAAATTCAGTATTTGCCCTAAGGGCTCCTCTGTATAAATGCAGCACGTCTGCTACAGTATATTCATTGAGGAAATTACAAAGAAATCTTCCAGATATTAAAATTCTATTTTGGTATCAGAGCACAATGGCCAACGCCTCATCAATGTCGTCTACATCAGTGACCAACGTAGGCAATACAACATTCACCAGTCCACCGCTCAATCAATTATTGAATCAGATTACCACTATCAAGCTGGATCGTGGAAATTACCTCCTCTGGAAGAATCTGGCAATGCCCATCCTTCGCAGCTATAAACTGAAGGTCATCTACTGGGAACAAAATCATGTCCCCCAGAATTTATTCGCCAAGATGGTGAACCAGTCGAAGTCACTTCTGGAGCAGCTATCGGAGCACCCAGCTCTCAAACTGATGGAAGTGGTGCTTCCACATCTGAAGCAAGACTATCGATGA

Coding sequence (CDS)

ATGGGTTTTGGTTCCTTTTTTCTCAGATCTGAAGATGGGAGCGGATTCAGGCACACGCGAGAGGAAGAGAGGGTGAAGAGGGGTTCGGATTTTGAAGAAGAAGGAGCTCCGGCGACGACATGGAAGGGCTTCGGCGGCGGGGAGAAGAAGAGAGAAGGTGGGGGCGGCGGGAGAAGAATAGAGGGGAAGAGGTTCATATTAAGGAACCGAGTCACAGTGCCAGCTCAGCATCACCATCCAAGTCAGCCAGTACACGTCAAGGAACCAATTCATAATATAATCCAGAAGCTTCCCTCCAACGGAAATTCAGTATTTGCCCTAAGGGCTCCTCTGTATAAATGCAGCACGTCTGCTACAGTATATTCATTGAGGAAATTACAAAGAAATCTTCCAGATATTAAAATTCTATTTTGGTATCAGAGCACAATGGCCAACGCCTCATCAATGTCGTCTACATCAGTGACCAACGTAGGCAATACAACATTCACCAGTCCACCGCTCAATCAATTATTGAATCAGATTACCACTATCAAGCTGGATCGTGGAAATTACCTCCTCTGGAAGAATCTGGCAATGCCCATCCTTCGCAGCTATAAACTGAAGGTCATCTACTGGGAACAAAATCATGTCCCCCAGAATTTATTCGCCAAGATGGTGAACCAGTCGAAGTCACTTCTGGAGCAGCTATCGGAGCACCCAGCTCTCAAACTGATGGAAGTGGTGCTTCCACATCTGAAGCAAGACTATCGATGA

Protein sequence

MGFGSFFLRSEDGSGFRHTREEERVKRGSDFEEEGAPATTWKGFGGGEKKREGGGGGRRIEGKRFILRNRVTVPAQHHHPSQPVHVKEPIHNIIQKLPSNGNSVFALRAPLYKCSTSATVYSLRKLQRNLPDIKILFWYQSTMANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKVIYWEQNHVPQNLFAKMVNQSKSLLEQLSEHPALKLMEVVLPHLKQDYR

Homology

[Close]

BLAST of Lag0037750 vs. NCBI nr
Match: XP_016900937.1 (PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 8.4e-14
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 126 LQRNLPDIKILFWYQSTMANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYL 185
           L +N+   +   WYQS+M NA+ +   SVT    T+FT+P LNQ+LNQ+TTIKLDRGNYL
Sbjct: 59  LSQNISKFRNPIWYQSSMTNAAPI---SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYL 118

Query: 186 LWKNLAMPILRSYKLKVIYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
           LWK LA+PIL+SYKL    + ++     +       ++S++E   E
Sbjct: 119 LWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQPNESIVENAGE 161

[Close]

BLAST of Lag0037750 vs. NCBI nr
Match: KAA0049614.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK15972.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-11
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA+S    SVT    T FT+PPLNQ+LNQ+TT+KLDRGNYLLW+ LA+PIL+ YKL  
Sbjct: 1   MANAASF---SVTAALTTNFTNPPLNQILNQLTTVKLDRGNYLLWETLALPILKGYKLDG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
              ++   P  L       S S +E   E
Sbjct: 61  HLSDECPCPPKLIPLTTQPSGSTVENTGE 86

[Close]

BLAST of Lag0037750 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-10
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA S+     TN     F++PPLNQLLNQ++++KLDRGNYLLWK LA+PI++SYK + 
Sbjct: 1   MANAVSLVEFLTTN-----FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
               +N  P       + +S+S ++  +E
Sbjct: 61  HLTGENPCPPKFITNQIGESQSEIDGTAE 84

[Close]

BLAST of Lag0037750 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-10
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA S+     TN     F++PPLNQLLNQ++++KLDRGNYLLWK LA+PI++SYK + 
Sbjct: 1   MANAVSLVEFLTTN-----FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
               +N  P       + +S+S ++  +E
Sbjct: 61  HLTGENPCPPKFITNQIGESQSEIDGTAE 84

[Close]

BLAST of Lag0037750 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-10
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA S+  +S TN     F++PPLNQLLNQ++++KLDR NYLLWK LA+PI++SYK + 
Sbjct: 1   MANAVSLVESSTTN-----FSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
               +N  P         +S+S ++  +E
Sbjct: 61  YLTGENPCPPKFITNQTAESQSEIDGTAE 84

[Close]

BLAST of Lag0037750 vs. ExPASy TrEMBL
Match: A0A1S4DY80 (uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-14
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 126 LQRNLPDIKILFWYQSTMANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYL 185
           L +N+   +   WYQS+M NA+ +   SVT    T+FT+P LNQ+LNQ+TTIKLDRGNYL
Sbjct: 59  LSQNISKFRNPIWYQSSMTNAAPI---SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYL 118

Query: 186 LWKNLAMPILRSYKLKVIYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
           LWK LA+PIL+SYKL    + ++     +       ++S++E   E
Sbjct: 119 LWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQPNESIVENAGE 161

[Close]

BLAST of Lag0037750 vs. ExPASy TrEMBL
Match: A0A5A7U2Z6 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00960 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA+S    SVT    T FT+PPLNQ+LNQ+TT+KLDRGNYLLW+ LA+PIL+ YKL  
Sbjct: 1   MANAASF---SVTAALTTNFTNPPLNQILNQLTTVKLDRGNYLLWETLALPILKGYKLDG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
              ++   P  L       S S +E   E
Sbjct: 61  HLSDECPCPPKLIPLTTQPSGSTVENTGE 86

[Close]

BLAST of Lag0037750 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA S+     TN     F++PPLNQLLNQ++++KLDRGNYLLWK LA+PI++SYK + 
Sbjct: 1   MANAVSLVEFLTTN-----FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
               +N  P       + +S+S ++  +E
Sbjct: 61  HLTGENPCPPKFITNQIGESQSEIDGTAE 84

[Close]

BLAST of Lag0037750 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA S+     TN     F++PPLNQLLNQ++++KLDRGNYLLWK LA+PI++SYK + 
Sbjct: 1   MANAVSLVEFLTTN-----FSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
               +N  P       + +S+S ++  +E
Sbjct: 61  HLTGENPCPPKFITNQIGESQSEIDGTAE 84

[Close]

BLAST of Lag0037750 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 143 MANASSMSSTSVTNVGNTTFTSPPLNQLLNQITTIKLDRGNYLLWKNLAMPILRSYKLKV 202
           MANA S+  +S TN     F++PPLNQLLNQ++++KLDR NYLLWK LA+PI++SYK + 
Sbjct: 1   MANAVSLVESSTTN-----FSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEG 60

Query: 203 IYWEQNHVPQNLFAKMVNQSKSLLEQLSE 232
               +N  P         +S+S ++  +E
Sbjct: 61  YLTGENPCPPKFITNQTAESQSEIDGTAE 84

The following BLAST results are available for this feature:

BLAST of Lag0037750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900937.1	8.4e-14	45.28	PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]	[more]
KAA0049614.1	6.6e-11	50.56	UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK15972.1 UBN2_3 d...	[more]
KAA0060627.1	2.5e-10	44.94	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	2.5e-10	44.94	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_016901223.1	4.3e-10	44.94	PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]	[more]

BLAST of Lag0037750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0037750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DY80	4.1e-14	45.28	uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=...	[more]
A0A5A7U2Z6	3.2e-11	50.56	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3BVJ1	1.2e-10	44.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V1E0	1.2e-10	44.94	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A1S4DZ26	2.1e-10	44.94	uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=...	[more]

BLAST of Lag0037750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037750.1	Lag0037750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity