Lag0037713 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037713
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Zinc finger C3HC4-type RING finger family protein
Location	chr2: 8577698 .. 8578165 (-)
RNA-Seq Expression	Lag0037713
Synteny	Lag0037713

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACTGGTTGGAGAAAGGCGTTTTGTACTACAATCTCTCGAGATTCAGAATCCAATACTGTCTCTGAAAAACAGAGGACCTCCTCCTCTTCCTCCACCACGCCAAATCCCAGCCCCAGAAGCTGCGTTCGTTTGGGTTTCTTCAGCAATCCTTCTACTCCTCGCTTCAACTCTCATCACCCGGTCACTACTCCCGGTCTCCGCTGCCGTACTTCCCAAGACGCCGTTGAGAAGTCCACCGCCGTCAATCACAACCCTGCGCTCCAATGCAAGACTTCGAAGAAAAAAAAAAGAAAAAGACGGATAGAAACGATAGAAAACAAACCTGAAGAAGAATGTGGAGAAGAGGAATGTGCGAACAAATCGGAGAAGATGAATGTCGGAGAAGACGAAGGCGAGAAGACGAAGGCGAGAAGAATGATAGAAATCGGACCGAAGACTGATAGAAATCGGAGAAGACGCTGA

mRNA sequence

ATGGGTACTGGTTGGAGAAAGGCGTTTTGTACTACAATCTCTCGAGATTCAGAATCCAATACTGTCTCTGAAAAACAGAGGACCTCCTCCTCTTCCTCCACCACGCCAAATCCCAGCCCCAGAAGCTGCGTTCGTTTGGGTTTCTTCAGCAATCCTTCTACTCCTCGCTTCAACTCTCATCACCCGGTCACTACTCCCGGTCTCCGCTGCCGTACTTCCCAAGACGCCGTTGAGAAGTCCACCGCCGTCAATCACAACCCTGCGCTCCAATGCAAGACTTCGAAGAAAAAAAAAAGAAAAAGACGGATAGAAACGATAGAAAACAAACCTGAAGAAGAATGTGGAGAAGAGGAATGTGCGAACAAATCGGAGAAGATGAATGTCGGAGAAGACGAAGGCGAGAAGACGAAGGCGAGAAGAATGATAGAAATCGGACCGAAGACTGATAGAAATCGGAGAAGACGCTGA

Coding sequence (CDS)

ATGGGTACTGGTTGGAGAAAGGCGTTTTGTACTACAATCTCTCGAGATTCAGAATCCAATACTGTCTCTGAAAAACAGAGGACCTCCTCCTCTTCCTCCACCACGCCAAATCCCAGCCCCAGAAGCTGCGTTCGTTTGGGTTTCTTCAGCAATCCTTCTACTCCTCGCTTCAACTCTCATCACCCGGTCACTACTCCCGGTCTCCGCTGCCGTACTTCCCAAGACGCCGTTGAGAAGTCCACCGCCGTCAATCACAACCCTGCGCTCCAATGCAAGACTTCGAAGAAAAAAAAAAGAAAAAGACGGATAGAAACGATAGAAAACAAACCTGAAGAAGAATGTGGAGAAGAGGAATGTGCGAACAAATCGGAGAAGATGAATGTCGGAGAAGACGAAGGCGAGAAGACGAAGGCGAGAAGAATGATAGAAATCGGACCGAAGACTGATAGAAATCGGAGAAGACGCTGA

Protein sequence

MGTGWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSHHPVTTPGLRCRTSQDAVEKSTAVNHNPALQCKTSKKKKRKRRIETIENKPEEECGEEECANKSEKMNVGEDEGEKTKARRMIEIGPKTDRNRRRR

Homology

[Close]

BLAST of Lag0037713 vs. NCBI nr
Match: XP_008444966.1 (PREDICTED: uncharacterized protein LOC103488150 [Cucumis melo] >KAA0065069.1 Zinc finger family protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MGTGWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSH 60
          MGTGWRKAFCTTISRDSESN VSEKQR    SS TPNPSPRSCVRLGFFSNPSTPR  SH
Sbjct: 1  MGTGWRKAFCTTISRDSESNHVSEKQR----SSATPNPSPRSCVRLGFFSNPSTPRMQSH 60

Query: 61 HPVTTPGLRCRTSQDAVEKSTAVNHNPALQCKTS 95
           P+++PGLRCRT+QDA      VN +P L CKTS
Sbjct: 61 QPLSSPGLRCRTAQDA-----TVNQSPTLHCKTS 85

[Close]

BLAST of Lag0037713 vs. NCBI nr
Match: XP_038886131.1 (E3 ubiquitin-protein ligase WAV3 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MGTGWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSH 60
          MGTGWRKAFCTTISRDSESN VSEKQR    SS TPNPSPRSCVRLGFFSNPSTPR  SH
Sbjct: 1  MGTGWRKAFCTTISRDSESNNVSEKQR----SSGTPNPSPRSCVRLGFFSNPSTPRLQSH 60

Query: 61 HPVTTPGLRCRTSQDAVEKSTAVNHNPALQCKTS 95
           P+++PGLRCRT+QDA      VN +P L CKTS
Sbjct: 61 QPLSSPGLRCRTAQDA-----TVNQSPTLHCKTS 85

[Close]

BLAST of Lag0037713 vs. NCBI nr
Match: XP_004148404.1 (E3 ubiquitin-protein ligase WAV3 [Cucumis sativus] >KGN62778.1 hypothetical protein Csa_022221 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MGTGWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSH 60
          MGTGWRKAFCTTISRDSESN  SEKQR    SS TPNPSPRSCVRLGFFSNPSTPR  SH
Sbjct: 1  MGTGWRKAFCTTISRDSESNNASEKQR----SSATPNPSPRSCVRLGFFSNPSTPRMQSH 60

Query: 61 HPVTTPGLRCRTSQDAVEKSTAVNHNPALQCKTS 95
           P+++PGLRCRT+QDA      VN +P L CKTS
Sbjct: 61 QPLSSPGLRCRTAQDA-----TVNQSPTLHCKTS 85

[Close]

BLAST of Lag0037713 vs. NCBI nr
Match: XP_022961918.1 (uncharacterized protein LOC111462543 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-25
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MGTGWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSH 60
          MGTGWRKAFCTT+SRDS+SN  SEKQR    SS T NPSPRSCVRLGFFSNPSTPR  S+
Sbjct: 1  MGTGWRKAFCTTVSRDSDSN--SEKQR----SSGTANPSPRSCVRLGFFSNPSTPRLQSN 60

Query: 61 HPVTTPGLRCRTSQDAVEKSTAVNHNPALQCKTS 95
           P+T+PGLRCRT+ DAVEKST       LQCKTS
Sbjct: 61 QPLTSPGLRCRTTHDAVEKST------TLQCKTS 82

[Close]

BLAST of Lag0037713 vs. NCBI nr
Match: KAG6598750.1 (E3 ubiquitin-protein ligase WAV3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-25
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MGTGWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSH 60
          MGTGWRKAFCTT+SRDS+SN  SEKQR    SS T NPSPRSCVRLGFFSNPSTPR  S+
Sbjct: 1  MGTGWRKAFCTTVSRDSDSN--SEKQR----SSGTANPSPRSCVRLGFFSNPSTPRLQSN 60

Query: 61 HPVTTPGLRCRTSQDAVEKSTAVNHNPALQCKTS 95
           P+T+PGLRCRT+ DAVEKST       LQCKTS
Sbjct: 61 QPLTSPGLRCRTTHDAVEKST------TLQCKTS 82

[Close]

BLAST of Lag0037713 vs. ExPASy Swiss-Prot
Match: Q9LTA6 (E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.5e-11
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MGTGWRKAFCTTISRDSESNTVS-EKQRTSSSSSTTPNPSPRSCVRLGFF---SNPSTPR 60
          MGTGWR+AFCTT  R+S++     +KQRT    + TP+PSPRSCV+L F    SNPSTPR
Sbjct: 1  MGTGWRRAFCTTAPRNSDAAAPDLDKQRT--GYNLTPSPSPRSCVKLAFLSGGSNPSTPR 60

Query: 61 FNSHHPVTTPGLRCRTS 74
            S     +P LRCRT+
Sbjct: 61 STS-----SPSLRCRTA 70

[Close]

BLAST of Lag0037713 vs. ExPASy Swiss-Prot
Match: Q0WQX9 (Probable E3 ubiquitin-protein ligase WAVH2 OS=Arabidopsis thaliana OX=3702 GN=WAVH2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 4  GWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSHHPV 63
          GWRKAFCT++S    SN    +Q +S  ++  P P+PR   + GF SNPSTPR  S    
Sbjct: 4  GWRKAFCTSVS----SNQDKPQQHSSLHTTDPPIPTPRFRSKFGFLSNPSTPRLRSR--- 63

Query: 64 TTPGLRCRTSQDAVEKSTAVNHNPALQCKTS 95
             G  CR+S        ++  +P L C+T+
Sbjct: 64 GGSGTGCRSSASTSVTIPSLPTSPKLHCRTT 87

[Close]

BLAST of Lag0037713 vs. ExPASy Swiss-Prot
Match: Q9ZQ46 (E3 ubiquitin-protein ligase WAVH1 OS=Arabidopsis thaliana OX=3702 GN=WAVH1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 1  MGTGWRKAFCTTISRDSESNTVSEKQRTSSSSSTTPNPSPRSCVRLGFFSNPSTPRFNSH 60
          M  GWR+AFCT+I +++  N V +         +T         R GFFS PSTPR +S 
Sbjct: 1  MLNGWRRAFCTSIPKETNQNDVDDDGLVGLRHKSTS--------RFGFFSTPSTPRSDS- 60

Query: 61 HPVTTPGLRCRTS-QDAVEKSTAVNHNPALQCKTS 95
              T  LRCRTS   AV  ++++   P L+CKT+
Sbjct: 61 -GTGTYSLRCRTSTATAVSTTSSLPGTPKLKCKTT 85

The following BLAST results are available for this feature:

BLAST of Lag0037713 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444966.1	1.7e-28	75.53	PREDICTED: uncharacterized protein LOC103488150 [Cucumis melo] >KAA0065069.1 Zin...	[more]
XP_038886131.1	1.7e-28	75.53	E3 ubiquitin-protein ligase WAV3 [Benincasa hispida]	[more]
XP_004148404.1	2.8e-28	74.47	E3 ubiquitin-protein ligase WAV3 [Cucumis sativus] >KGN62778.1 hypothetical prot...	[more]
XP_022961918.1	3.8e-25	73.40	uncharacterized protein LOC111462543 [Cucurbita moschata]	[more]
KAG6598750.1	3.8e-25	73.40	E3 ubiquitin-protein ligase WAV3, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Lag0037713 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTA6	9.5e-11	54.55	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV...	[more]
Q0WQX9	1.1e-06	38.46	Probable E3 ubiquitin-protein ligase WAVH2 OS=Arabidopsis thaliana OX=3702 GN=WA...	[more]
Q9ZQ46	3.2e-06	38.95	E3 ubiquitin-protein ligase WAVH1 OS=Arabidopsis thaliana OX=3702 GN=WAVH1 PE=1 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037713.1	Lag0037713.1	mRNA