Lag0037711 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037711
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 8567095 .. 8567481 (-)
RNA-Seq ExpressionLag0037711
SyntenyLag0037711
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCCGTGGCTGAGAGTGTTAAGTGCCTGCTTGATAATGTCAACAGGCCTTACCCAAAAATCATTGTTGAATCGGATTCCGCAGATGTTGTCGCCATCCTCAATCGGATTACGGCTGATTGTTCGGAGGTTGCTCTGTTTGCGGACGAAGTGCAGCGTTTGGCCAAGCTTTCGGGAGTTGTTTCTTTCTCCTCTATTCCGAGGGGTTCAAATCTTGTAGCGCACTATATTGCGCGTTCTGCTATTGCTTGTGATTCTCCAAGCAATTCTAGCTGTTTTTTGGGTTCTTCCATTTCGGAAGACGAACAGAGTTCTTTGGGCTCTTTGCCCAGTTGGCTGTCATCCTCCTTAATTAAGGAGGTTTCTGTTGGTGTTGGTTGTTGA

mRNA sequence

ATGCTGGCCGTGGCTGAGAGTGTTAAGTGCCTGCTTGATAATGTCAACAGGCCTTACCCAAAAATCATTGTTGAATCGGATTCCGCAGATGTTGTCGCCATCCTCAATCGGATTACGGCTGATTGTTCGGAGGTTGCTCTGTTTGCGGACGAAGTGCAGCGTTTGGCCAAGCTTTCGGGAGTTGTTTCTTTCTCCTCTATTCCGAGGGGTTCAAATCTTGTAGCGCACTATATTGCGCGTTCTGCTATTGCTTGTGATTCTCCAAGCAATTCTAGCTGTTTTTTGGGTTCTTCCATTTCGGAAGACGAACAGAGTTCTTTGGGCTCTTTGCCCAGTTGGCTGTCATCCTCCTTAATTAAGGAGGTTTCTGTTGGTGTTGGTTGTTGA

Coding sequence (CDS)

ATGCTGGCCGTGGCTGAGAGTGTTAAGTGCCTGCTTGATAATGTCAACAGGCCTTACCCAAAAATCATTGTTGAATCGGATTCCGCAGATGTTGTCGCCATCCTCAATCGGATTACGGCTGATTGTTCGGAGGTTGCTCTGTTTGCGGACGAAGTGCAGCGTTTGGCCAAGCTTTCGGGAGTTGTTTCTTTCTCCTCTATTCCGAGGGGTTCAAATCTTGTAGCGCACTATATTGCGCGTTCTGCTATTGCTTGTGATTCTCCAAGCAATTCTAGCTGTTTTTTGGGTTCTTCCATTTCGGAAGACGAACAGAGTTCTTTGGGCTCTTTGCCCAGTTGGCTGTCATCCTCCTTAATTAAGGAGGTTTCTGTTGGTGTTGGTTGTTGA

Protein sequence

MLAVAESVKCLLDNVNRPYPKIIVESDSADVVAILNRITADCSEVALFADEVQRLAKLSGVVSFSSIPRGSNLVAHYIARSAIACDSPSNSSCFLGSSISEDEQSSLGSLPSWLSSSLIKEVSVGVGC
Homology
The following BLAST results are available for this feature:
BLAST of Lag0037711 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0037711 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 16..82
e-value: 1.8E-8
score: 34.2
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 1..80
e-value: 1.11996E-10
score: 53.0868

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037711.1Lag0037711.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity