Lag0037696 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037696
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr2: 8445399 .. 8446097 (-)
RNA-Seq Expression	Lag0037696
Synteny	Lag0037696

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAACATTTTGGTATGTCAACAATATTTTAAATGCTAGGAAAAATAAAGGATAAGAATTCGAACCTCTAATCTCTTAGTTATGCCAGTTGAGCTATACTCTTGTTGGACAATGTTGGACAATTAGTCATGAGTGTTAAGGATATTAGTTATTTTGTTATGGATTTTTGTTATTTTTCCATGATCTTCTCCATTTTTGTTATTTTATATTTTGTATTATATTATTCATTTGTGTATAAATAGGGTTCAATTGTATATTCTCAAATCACTCAATCAATACAGCCTTTTCATAATCTTTGAAAAGTTTCATGGTAAGAGCTCCCTAATTTCTCTGAGGCTTGATTCCACAAATTTTGTACAGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCATATTGTCCTCTACATCGACGGAGACTGCAACTGAAGCACCTCCTGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGGAGTTACTTTATGAGGAGTGGGTTGCTAAAGATGAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAGCCTTAACCTATGTTGTTGGTTGCACATCATCCAAACAAGCCGTGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGA

mRNA sequence

ATGTCCAACATTTTGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCATATTGTCCTCTACATCGACGGAGACTGCAACTGAAGCACCTCCTGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGGAGTTACTTTATGAGGAGTGGGTTGCTAAAGATGAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAGCCTTAACCTATGTTGTTGGTTGCACATCATCCAAACAAGCCGTGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGA

Coding sequence (CDS)

ATGTCCAACATTTTGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCATATTGTCCTCTACATCGACGGAGACTGCAACTGAAGCACCTCCTGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGGAGTTACTTTATGAGGAGTGGGTTGCTAAAGATGAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAGCCTTAACCTATGTTGTTGGTTGCACATCATCCAAACAAGCCGTGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGA

Protein sequence

MSNILSILKAHKLFGFIDGSTNCPPKTVPSSTILSSTSTETATEAPPAPVSSQINPLYEELLYEEWVAKDEALMTLINATLSPAALTYVVGCTSSKQAVRFLKSTTLRAQEPTSSI

Homology

[Close]

BLAST of Lag0037696 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 4   ILSILKAHKLFGFIDGSTNCPPKTVPSSTILSSTSTETATEAPPAPVSSQINPLYEELLY 63
           + +ILKAHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP      Y
Sbjct: 46  LTAILKAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNP-----SY 105

Query: 64  EEWVAKDEALMTLINATLSPAALTYVVGCTSSKQ 98
           E+W+AKD+ALMT+INATLSP AL YVVG TSSKQ
Sbjct: 106 EDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Lag0037696 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 4   ILSILKAHKLFGFIDGSTNCPPKTVPSSTILSSTSTETATEAPPAPVSSQINPLYEELLY 63
           + +ILKAHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP      Y
Sbjct: 46  LTAILKAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNP-----SY 105

Query: 64  EEWVAKDEALMTLINATLSPAALTYVVGCTSSKQ 98
           E+W+AKD+ALMT+INATLSP AL YVVG TSSKQ
Sbjct: 106 EDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Lag0037696 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 4   ILSILKAHKLFGFIDGSTNCPPKTVPSSTILSSTSTETATEAPPAPVSSQINPLYEELLY 63
           + +ILKAHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP      Y
Sbjct: 46  LTAILKAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNP-----SY 105

Query: 64  EEWVAKDEALMTLINATLSPAALTYVVGCTSSKQ 98
           E+W+AKD+ALMT+INATLSP AL YVVG TSSKQ
Sbjct: 106 EDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Lag0037696 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 4   ILSILKAHKLFGFIDGSTNCPPKTVPSSTILSSTSTETATEAPPAPVSSQINPLYEELLY 63
           + +ILKAHKL+GFIDG+  CPP+T  S    SSTST      PP     Q NP      Y
Sbjct: 46  LTAILKAHKLYGFIDGTNPCPPRTNNS----SSTST-----VPP-----QSNP-----SY 105

Query: 64  EEWVAKDEALMTLINATLSPAALTYVVGCTSSKQ 98
           E+W+AKD+ALMT+INATLSP AL YVVG TSSKQ
Sbjct: 106 EDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Lag0037696 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 6.6e-14
Identity = 51/94 (54.26%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 4   ILSILKAHKLFGFIDGSTNCPPKTVPSSTILSSTSTETATEAPPAPVSSQINPLYEELLY 63
           + +ILKAHKLFGF+DG+  CP            TS  T +  PP     Q NP     LY
Sbjct: 46  LTAILKAHKLFGFVDGTNPCP-----------QTSPSTTSTVPP-----QTNP-----LY 105

Query: 64  EEWVAKDEALMTLINATLSPAALTYVVGCTSSKQ 98
           E+W+AKD+ALMT+INATLSP AL YVVG TSSKQ
Sbjct: 106 EDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 118

The following BLAST results are available for this feature:

BLAST of Lag0037696 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448007.1	3.0e-14	58.51	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	3.0e-14	58.51	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	3.0e-14	58.51	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	3.0e-14	58.51	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]
KAE8645659.1	6.6e-14	54.26	hypothetical protein Csa_020439 [Cucumis sativus]	[more]

BLAST of Lag0037696 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037696.1	Lag0037696.1	mRNA