Lag0037663 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037663
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 8107266 .. 8110075 (-)
RNA-Seq Expression	Lag0037663
Synteny	Lag0037663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTGGTCGGCCTCGGGAAGAGGCCGAGCACATCAATCTCTCTCTTTAGCTTATCTGGTCGGCCTCGGCCTCGGGAAGAGGCCGAGCACAGCAGCTTCCCGTTTTGGGTTATCTGGTCGGCCTTGGGAAAAGGCCGAGCACAGCAGCTAAACCCCTGTACTTGGTCATTCGGAACGCTTCATTCCAGATCCGGGGCTTTTGCAGGTGACTGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAACTCCTCCGTGCTGTTTTCTTCTTGCCCGCTCCACGGTTAGGCTTATGTGTGTATTTGTCCGGTCCTACCTTAAGCATCTCCCTGCGGCTTTGGAGCTAGGATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTACTTTTCTCTGTTGTATCCATCCCGAGGGTGCGTACACTCTTTTGGGCAAAACTTGGGGAGGTTGAGGGCATGCGTCAACCTCTCTGCAAGAGTTTAGTCTCTTTCCACGGGAAAGTGTGGAAGTTTGGCCTCTACAAGAATCATTCCTGTCTAGCCACATGCACCACATCCTATAGAAAAATGCTTTTGCACAAACACAGTATAAAGAATTTTATCTAATTTGCAAGTGTCAACATTGTACCATGGAGAAAAGTTGTGGACATGTGTTATACAAAATGAAAATAAGTAATTGCCCCAATAGCTCCACTGATATTCATAACGTTATCCTAACTTGAATAAGTAAGAAAGGAAAATCAGAATTATCGCAACATGACCATGATTATGATGGACTCGGTTTGTCCTTACTCCCAACCCCCCACTCAAAATATGCGTTCAATACCTTGGGCGTGCATTTTTTGAGTAAGGAGAAACTAACTTCGTACCTGGGCCTCTAGGGGCGGAACTCGACCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATAAGGACGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAAGGTGCGTGCACCCAGTTAGGGAAAACTTGGGGAGGTCGAGGAATTTCCCGAGCCCCCACTCAAAATACGCATTCCAGATTTAATGAGTTGCATTTTTTTTAGTAAGAAAATATAATGTCATACCTGGTTTTTTGAGGACAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCTGACCTTGGCATGAGGTTGAGCCTCGCTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCAGATACCTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCTATTCCTTGTCTAATGGTCGGCCTTAGCCTTGACATGAGGACGAGCGCTTTTCCTGCATGGTTTGAGAAGTTTGAGGGAAACTTGGGGAGGCTTTGGGATTTCCCAAGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCCTGTGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCTCAAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCTCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAATGTATGTTCAAACTACCTTCTATCATATTTCCACACAATTTTGATGGCATATCAAGCAACAAAGTATTTTAAGGGAAGAAACTGTTGTCAAAAGCTTGAAGCTTGAAAATATAGCCAGGAAAAAATCATTGCAATATAACTAACGACCATGATTATTCCCAGTCCCCCACTCAAAAAAATGTATTCAATACGCAAAATATGCATTTTTTGAGTAAGGAAAGACTTACTTCGTGACCGAGCTCTTGAAGGTGGTGTTTGGCCTTAGCCTCTAGGTGGTCGGCCTCAGCCTTGGCATGAGGCCGACCAACTCCTCTGTGTCATCTGCGCACTCAGCCCGTGACTCGACTTATGTGCAGAGCATCTCCCTTTCGGCTTGAACCGCTTCGGCTACGATAACAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGCTTTGGGAGGCCTGGGAATCTCCCGAGTCTCTCTGCAAGCGCTGTCAAAACTTTTGAAACAAAATTCAGAGTAA

mRNA sequence

ATGGCTCTGGTCGGCCTCGGGAAGAGGCCGAGCACATCAATCTCTCTCTTTAGCTTATCTGGTCGGCCTCGGCCTCGGGAAGAGGCCGAGCACAGCAGCTTCCCGTTTTGGGTTATCTGGTCGGCCTTGGGAAAAGGCCGAGCACAGCAGCTAAACCCCTGTACTTGGTCATTCGGAACGCTTCATTCCAGATCCGGGGCTTTTGCAGCATCTCCCTGCGGCTTTGGAGCTAGGATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTACTTTTCTCTGTTGTATCCATCCCGAGGGGGCGGAACTCGACCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATAAGGACGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCTGACCTTGGCATGAGGTTGAGCCTCGCTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCAGATACCTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCTATTCCTTGTCTAATGGTCGGCCTTAGCCTTGACATGAGGACGAGCGCTTTTCCTGCATGGTTTGAGAAGTTTGAGGGAAACTTGGGGAGGCTTTGGGATTTCCCAAGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCCTGTGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCTCAAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCTCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGAGCATCTCCCTTTCGGCTTGAACCGCTTCGGCTACGATAACAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGCTTTGGGAGGCCTGGGAATCTCCCGAGTCTCTCTGCAAGCGCTGTCAAAACTTTTGAAACAAAATTCAGAGTAA

Coding sequence (CDS)

ATGGCTCTGGTCGGCCTCGGGAAGAGGCCGAGCACATCAATCTCTCTCTTTAGCTTATCTGGTCGGCCTCGGCCTCGGGAAGAGGCCGAGCACAGCAGCTTCCCGTTTTGGGTTATCTGGTCGGCCTTGGGAAAAGGCCGAGCACAGCAGCTAAACCCCTGTACTTGGTCATTCGGAACGCTTCATTCCAGATCCGGGGCTTTTGCAGCATCTCCCTGCGGCTTTGGAGCTAGGATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTACTTTTCTCTGTTGTATCCATCCCGAGGGGGCGGAACTCGACCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATAAGGACGACCAGCTCCTCTGTGTTGTTCGCTTGCTTGTTTTCCATTCCAAAGTTCATTCTTGAAGCTGAGGCAGCCGGCCCTGACCTTGGCATGAGGTTGAGCCTCGCTTCTCCATCACTTGTTTGTTTGCCTCATAGTTGGACTCATGTGCAGATACCTGGTCTGCGAAGTGACTACCGGACTCAGTCGAGCCCTATTCCTTGTCTAATGGTCGGCCTTAGCCTTGACATGAGGACGAGCGCTTTTCCTGCATGGTTTGAGAAGTTTGAGGGAAACTTGGGGAGGCTTTGGGATTTCCCAAGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCCTGTGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCTCAAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCAGGGCCTCTCTTCAAGCGTCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTGGGAATTTCTCAAGCCTCTCTTCAAGCTGCATAGTCATCCCAGGGAGCATCTCCCTTTCGGCTTGAACCGCTTCGGCTACGATAACAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGCTTTGGGAGGCCTGGGAATCTCCCGAGTCTCTCTGCAAGCGCTGTCAAAACTTTTGAAACAAAATTCAGAGTAA

Protein sequence

MALVGLGKRPSTSISLFSLSGRPRPREEAEHSSFPFWVIWSALGKGRAQQLNPCTWSFGTLHSRSGAFAASPCGFGARMLGLGLGMRLSISSALLATFLCCIHPEGAELDLGLWMVGLGLGIRTTSSSVLFACLFSIPKFILEAEAAGPDLGMRLSLASPSLVCLPHSWTHVQIPGLRSDYRTQSSPIPCLMVGLSLDMRTSAFPAWFEKFEGNLGRLWDFPRPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLWRPRNFPGPLFKHCGHPRGAYTLLGKSLGRPRNFPGPLFKHCGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKKLGEAWEFLKPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKKLGEAWEFLKPLFKLHSHPREHLPFGLNRFGYDNRSSVVVFPGVRTLLWGKALGGLGISRVSLQALSKLLKQNSE

Homology

[Close]

BLAST of Lag0037663 vs. NCBI nr
Match: XP_015472393.2 (basic proline-rich protein-like, partial [Parus major])

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-17
Identity = 100/277 (36.10%), Postives = 107/277 (38.63%), Query Frame = 0


Query: 213 GNLGRLWDFPRPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLW 272
           G  G     P P  K  G P       G + G P   PGPL    G    A   LGK+  
Sbjct: 28  GGTGATGTAPGPPGKAPGPP-------GTAPGPPGKAPGPLGTGTGSTGEAPGPLGKAPG 87

Query: 273 RPRNFPGPLFKHCGHPRGAYTLLGKSLGRPRNFPGPLFKHCGHPRGAYTLLGKSLGRPRN 332
            P    GPL    G P  A   LG   G P   PGP     G P  A  L G++   PR 
Sbjct: 88  PPGRGRGPLGTAPGSPGTAPGPLGMGTGPPGTAPGPPGTPPGPPGEAPGLPGEAPRPPRT 147

Query: 333 FPGPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGP 392
            PGPL K  G P       G   G P   PGPL K  G P      LGK+LG PR  PGP
Sbjct: 148 APGPLGKAPGPP-------GTPPGPPGTPPGPLGKAPGPPGTPPGPLGKALGPPRTAPGP 207

Query: 393 LFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKKLGEAWEFLKPLFKR 452
           L K  G P     LLG   G P   PGPL    G        LG   G       PL   
Sbjct: 208 LGKAPGPPGTPPGLLGTPPGPPGTAPGPLGMGTGP-------LGMGTGPLGTAPGPLGTP 267

Query: 453 CGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYT 490
            G P  A   LG + G P   PGP  +  G P G  T
Sbjct: 268 PGLPGEAPGPLGTAPGPPGKTPGPPGEAPG-PLGTVT 282

[Close]

BLAST of Lag0037663 vs. NCBI nr
Match: KAG8597368.1 (hypothetical protein GDO81_002266 [Engystomops pustulosus])

HSP 1 Score: 77.4 bits (189), Expect = 4.4e-10
Identity = 62/192 (32.29%), Postives = 75/192 (39.06%), Query Frame = 0


Query: 243 LGRPRNFPGPLFKRRGHPRGAYTLLGKSLWRPRNFPGPLFKHCGHPRGAYTLLGKSLGRP 302
           + R  +F GP   R GH        G S+ R R+FPGP                 S+ R 
Sbjct: 1   MSRHGHFLGPSMSRHGH------FPGPSMSRHRHFPGP-----------------SMSRH 60

Query: 303 RNFPGPLFKHCGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLGRPRNFP 362
           R+FPGP                 S+ R R+FPGP   R GH        G S+ R R+F 
Sbjct: 61  RHFPGP-----------------SMSRHRHFPGPNMSRHGH------FPGPSMSRHRHFL 120

Query: 363 GPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLF 422
           GP   R GH       LG S+ R  +FPGP   R GH                 FPGP  
Sbjct: 121 GPSMSRHGH------FLGPSMSRHGHFPGPSMSRHGH-----------------FPGPSM 123

Query: 423 KRRGHPRGAYTL 435
            R+GH  G   L
Sbjct: 181 SRQGHFPGRRVL 123

[Close]

BLAST of Lag0037663 vs. NCBI nr
Match: KAG9267222.1 (hypothetical protein AMEX_G18039, partial [Astyanax mexicanus])

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-10
Identity = 85/274 (31.02%), Postives = 94/274 (34.31%), Query Frame = 0


Query: 222 PRPLFKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPRGAYTLLGKSLWRPRNFPG-- 281
           P PL K+ GHPR  Y     S       P PL K  GHPR           RP   P   
Sbjct: 285 PAPLPKQSGHPR--YQNKAASPATKTQRPAPLPKHSGHPR-------YQTQRPAPLPNTA 344

Query: 282 --PLFKHCGHPRGAYTLLGKSLGRPRNFPGPLFKHCGHPRGAYTLLGKSLGRPRNFPGPL 341
             P  KH GHPR   T    +    R  P PL KH   PR  Y             P PL
Sbjct: 345 AIPATKHSGHPRYQNTAASPATKTQR--PSPLPKHSDQPR--YQNRAAIPATKTQQPAPL 404

Query: 342 FKRRGHPRGAYTLLGKSLGRPRNFPGPLFKRCGHPRGAYTLLGKSLGRPRNFPGPLFKRC 401
            K+ GHPR   T    +    R  P PL      P    T   +S   P     P  K  
Sbjct: 405 PKQSGHPRYQNTAASPATKTQR--PAPLQNTAAIPA---TKTQRSAPLPNTAAIPATKHS 464

Query: 402 GHPRGAYTLLGKSLGRPRNFP------GPLFKRRGHPRGAYTLLGKKLGEAWEFLKPLFK 461
           GHPR   T    +    R  P       P  K  GHPR              +   PL K
Sbjct: 465 GHPRYQNTAASPATKTQRPAPLPNTATSPATKHSGHPR-----------YQTQRPSPLPK 524

Query: 462 RCGHPRGAYTLLGKSLGRPRNFPGPLFKRRGHPR 486
             G PR   T+   +    R  P PL K  G PR
Sbjct: 525 HSGQPRYQNTVAIPATKTQR--PAPLPKHSGQPR 527

The following BLAST results are available for this feature:

BLAST of Lag0037663 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015472393.2	2.8e-17	36.10	basic proline-rich protein-like, partial [Parus major]	[more]
KAG8597368.1	4.4e-10	32.29	hypothetical protein GDO81_002266 [Engystomops pustulosus]	[more]
KAG9267222.1	5.7e-10	31.02	hypothetical protein AMEX_G18039, partial [Astyanax mexicanus]	[more]

BLAST of Lag0037663 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0037663 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0037663 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 408..420 e-value: 88.0 score: 4.3 coord: 240..252 e-value: 88.0 score: 4.3 coord: 464..476 e-value: 88.0 score: 4.3 coord: 296..308 e-value: 88.0 score: 4.3 coord: 352..364 e-value: 88.0 score: 4.3 coord: 324..336 e-value: 88.0 score: 4.3 coord: 380..392 e-value: 88.0 score: 4.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037663.1	Lag0037663.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding