Lag0037596 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037596
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Replication factor C subunit
Location	chr2: 7569099 .. 7573530 (+)
RNA-Seq Expression	Lag0037596
Synteny	Lag0037596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAAAGCCCACATAGTCTCCGAAAGTCTTCCTCTCTCCGACTGAGCGCGGGAAAAACAAAAACCCTATTATCGGTGCCGGAGAGTTGGATCAGTGGCTGTGGAGGGAAAGAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATAGTACGTTTCCTTTTCCTTTCGTTCGTTTCACTTGTTTCTCAGAATGTTTTGCGTAATCTCAACCACCGTCCATTTTTCCGATCAACAGTCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGGGTTCTCACCAACACTCTCGAGACTGCTAGTGTACTGATTATCGACTTCTCTTTTTGATTATGGTGGTGATTTTATTTCTCTTCGCAACACAGGGTTAATTTTGTATTCTCTTCGATTTTTGGTTGGACAGTGTCCTCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCGATTGCCCATCAACTATTCGGGTTCGTACCTGATCCTATCTGTTTTATATAATCGTATTTGTGCCTCTTCTGTTGCTACTGCTTTTGAGGAAGTTGTGAATTTATGTTTGGTAGTTCAGAAATTTCTTCTAAGAAATATCTTGGATTCTCTCAATTGAGGGGTTTACTGGAAGTTTATGATGGGTATTTTAGAATCCTTTGTAAGAGATATCTTGGATTCTCTGCAGCTGGGGAATTAGGTTTCTTATGCTCGTTTGTAATCTTTTTAACCTTATTGGTTAAGGTCGTGGCTGAATTGTCGAAACATGAAACCACGGACTCACTATCATTATGGTTAAATCTTAAATGCCAGTTATCAAGATTTGGAGAGGTTTTTGCTCAAAGCGTTCGTGATTTGCTTGACTATGAAACCCGTCACTCTTCTTGGATGAATTCAAATGTTCAATCAATTGCTTTTGCTGTATAAAATATGAAGTAGACTATTTTAATGTCTTTTAAGTTTGTATCTGATATGAAAATTGTTATTTGCAGTCCTGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATTAAAGACTTTGCTGGTGTTGCAGTAAGCAGTGGCCAGCGCCAAGGGTAATTTTCTTAATCTTAGCTCTAACATTTTCATAATATTCCTGTTATGAACTTCACACTTTTTTGTTAAAAAAATTAATTTAGGGGCTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGGTGCAAACACAGTTTACATACAATCCATTTGCTTTATTATAGTTAATATGAGTTAAGTTTTTCCCCCTAATATTGAACATTATGTAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGTGAATTTAGTTTCCTTTTATAGTGTTTTAATTTCTATCTTTATTTTTGTAGATTTTTCTTTCTAGATTTGTGTTTTTGATGTTCATGAAAGTGTCCAATTTATTGTTGTTGATTTTGTACTTTTGATATTTATGACAGTCTCCAACCTTTTATGGAGTCAGTTAATAATCATAGCTCATAAGATGTTTGCATTTTTAAGCCCCTGCAACATTTATTCAATATACGAAAATGTTGTATCTATTTGTCTTGTGCATCCTATATAGTTCACATTTGAATTGTTAAGAGTACTGGAAAGTGGGTTCTACAATGGTCTGTTTTTATCTGGTCTTGAAACGTGTGTTTGTGTGGGAAAGCTAAGCTATCATCTCAGTGTTTTTTCCATCTCTGCAGGATTATAGAGCCCCTTGCTTCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGCAAGCGTATATTGCACATTAGTAATGAAGAAGGTCTGAATCTAGATGCAGAGGTTTGCTCATATTTGCTTAGTCTTACAAATTATGGTTTGAAATAAGCTATTTGGCATGACCTGTGTGATGTAAACTCACAATCTATGTAGGCCCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGGTATGGTTTTGTCTGCAAAATTGCACTGGTTGACAACTATTCTTTGATATTCCTCGTTCTCATGATAAATATGATTATATTAGGAGCTTGGAGGATTAAGGGCAAGAAAACCAACCACATGTTCTACTAGAATTAGTCAAAGATTTATTTTAGTTAGGGCTTCATGAAACTAACCTTTTGGTTATCAATTGTTTTGATTTGTCATTGTATGCCCTAAATAATTGTTTCCTGGAATCATTTGGATTTGGAATTGTTGATAATCCATTGCTATCGGATAATTGAATTTTCTTTCCTATATAACTTACATTGCTTGTAAAGTAGAAAGAGTACTAATGATTGTAGTAATTATTGATATATCCTTGCAGTTCCTTTGTCAATGTTTATGTACTGACAAAAATTGCAATAGAGTATAGACTTCTAGTGCATTAGAGTATAGACTTCGTAGTGGCTGCAAACCGGTAAGGACTACAAAAAATTTTCAGCTTTAAATTTTATAACCAACAATGGAGTTGTAAATGATATGTAATTCTGATATCTCTTGTAATGGAAATGCATGAGAGGGTGGGAAGAGCTTCTGTGTATTATAAAATAGAATCAGATTATGGGAGAATTAGTTGGGTGATAAATCCAATCACTCATTGCCATTGTCAATAAGCTCATAATTGTTGTAGTTTTTTTATCTGGATCTTTAGAAATGAACTTTGCTTGAGAATTCATTATTGCTGCTCTCATATAATTACTTGAAGCAAGTGTTTCTGTTTTATAATAGAAGCCAATATATTCTGCAGGTACTCTTGGTTGGTTAACGCAGTTTGTAGTTGAAAATATAATAGTTGAATCTTTTCTAACTACTATCTTTTTCTTTTTCTTTTTTTTCCCCCTCCAGTCAGCGGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATCTGATTAGTGTGTCTGGGGTGAGTTATGTGAAATTTTGACAAGTCTTATCATCCCTAGAATACCAAAAACAGAGAGCTAAAAATGATTATTCTTGCTGAAGGTTCAATTTGACCTTCATTCTGGTTGAATGTTGATGCTAATCTGTAAACACAAAGTTTATATGTGCCTTGCCCTTGTATCCATGTTCCTTCAACTTCTTCCGGAAACCAACTCTTTTGCCCGCTCATGATCCTTTTTGAAACTGTGGCATTGGAGAATGAGCATAATTACTCAAGATGCCATTTGCGATTTTTATTTTGTTCTTTTGGAAGGTTGAATCTGTAACCAGATTATGTTTCATATTTTCAGTTTTGTAGGAGTTTTGAGTTTTCCATTTTCCGCTATAAATTATAACACATGCTAGATTATTAGGCTTTTTGGTGATATATTTTGCACAGAATTTTCTTGGGTAACCATATTTATAGCGGTTGTACCTTTTCTTTTTTAATCCTCGGCAGGTTATACCTCGGAAGGTTGTTGATGCCCTTTTTGCCGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTCAACAATGTAATTGCTGAAGGATATCCAGTGGCTCAAATGCTTTCACAGGTTTTATTATTGCTCAATCTATATTCTATTACTGTATTTTTGAAGGATGAATGGAGATACGTAAAACTCTGATGTTTCCTACAGATATTTGAGGTGGTTGTTGAAGCCCATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGGTCACTTCTATCTATTTCCATGTTCAATTGTGTTTTTGCTCTCTAAAGTTTATGTGAATTACGCATCAGGTTGGACATATCATTATAAGTTATATTTTGGTGTATAACATGACATATCAATATCATTATAAGTTATAATTTGGTGTATAACAATCTTATATATTTTATTTATGTAACCTGTAACATAATTACTTTCTTTCAAATATTGGACATTCCATCAGGAATGCTTTTCAATGATTGTCAGCTAATTGACACAATTTTGAAAATGGACATTGCCATTAAATTTTTTTTCATGCAAAATATAAACTGCTTCGGAAAATGGGAGTTGCTAATTATATAATTTGTAGCCCGGTTTATCTTCTTGCATTAGGTAACTTCTTCGTATTATATTAGATCTAATGTTGATTAAATATTTTACTTGGTTTGGCTTTACTTTTAATTGTAAAATATATGGATAAAAAATAATTTAACCAACGTTGTTGTCATTGTCATGTCAATCTGCAGTGTCTGGTCGATGGTGCGGATGAATATTTGCAGCTGCTCGATGTGGTTAGTCAAACAATGCAAGCTCTAAGTAGTATGCAACTGTAA

mRNA sequence

ATGGCCCAAAGCCCACATAGTCTCCGAAAGTCTTCCTCTCTCCGACTGAGCGCGGGAAAAACAAAAACCCTATTATCGGTGCCGGAGAGTTGGATCAGTGGCTGTGGAGGGAAAGAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGGGTTCTCACCAACACTCTCGAGACTGCTAGTTGTCCTCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCGATTGCCCATCAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATTAAAGACTTTGCTGGTGTTGCAGTAAGCAGTGGCCAGCGCCAAGGGGGCTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCTTCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGCAAGCGTATATTGCACATTAGTAATGAAGAAGGTCTGAATCTAGATGCAGAGGCCCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCGGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATCTGATTAGTGTGTCTGGGGTTATACCTCGGAAGGTTGTTGATGCCCTTTTTGCCGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTCAACAATGTAATTGCTGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGCCCATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTCGATGGTGCGGATGAATATTTGCAGCTGCTCGATGTGGTTAGTCAAACAATGCAAGCTCTAAGTAGTATGCAACTGTAA

Coding sequence (CDS)

ATGGCCCAAAGCCCACATAGTCTCCGAAAGTCTTCCTCTCTCCGACTGAGCGCGGGAAAAACAAAAACCCTATTATCGGTGCCGGAGAGTTGGATCAGTGGCTGTGGAGGGAAAGAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGGGTTCTCACCAACACTCTCGAGACTGCTAGTTGTCCTCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCGATTGCCCATCAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATTAAAGACTTTGCTGGTGTTGCAGTAAGCAGTGGCCAGCGCCAAGGGGGCTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCTTCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGCAAGCGTATATTGCACATTAGTAATGAAGAAGGTCTGAATCTAGATGCAGAGGCCCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCGGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATCTGATTAGTGTGTCTGGGGTTATACCTCGGAAGGTTGTTGATGCCCTTTTTGCCGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTCAACAATGTAATTGCTGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGCCCATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTCGATGGTGCGGATGAATATTTGCAGCTGCTCGATGTGGTTAGTCAAACAATGCAAGCTCTAAGTAGTATGCAACTGTAA

Protein sequence

MAQSPHSLRKSSSLRLSAGKTKTLLSVPESWISGCGGKEMAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL

Homology

[Close]

BLAST of Lag0037596 vs. NCBI nr
Match: XP_038897028.1 (replication factor C subunit 4 [Benincasa hispida])

HSP 1 Score: 639.4 bits (1648), Expect = 1.9e-179
Identity = 325/336 (96.73%), Postives = 334/336 (99.40%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AI+HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDL+SVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVSVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVDALF+ACKSGNFD+ANKEVNNV+AEGYPVAQMLSQIFEVVVE +DLQDEQKARIC
Sbjct: 241 PREVVDALFSACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKARIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 336

[Close]

BLAST of Lag0037596 vs. NCBI nr
Match: XP_023523758.1 (replication factor C subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 637.9 bits (1644), Expect = 5.6e-179
Identity = 327/337 (97.03%), Postives = 334/337 (99.11%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE+VMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEKVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVD LFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVV+EAHDLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQAL-SSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQAL SSMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]

BLAST of Lag0037596 vs. NCBI nr
Match: KAG6608033.1 (Replication factor C subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 636.3 bits (1640), Expect = 1.6e-178
Identity = 326/337 (96.74%), Postives = 333/337 (98.81%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVD LFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVV+EAHDLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQAL-SSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQAL SSMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]

BLAST of Lag0037596 vs. NCBI nr
Match: XP_022981026.1 (replication factor C subunit 4 [Cucurbita maxima])

HSP 1 Score: 634.8 bits (1636), Expect = 4.7e-178
Identity = 325/337 (96.44%), Postives = 332/337 (98.52%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHS VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSNVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTL SISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLGSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVD LFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVV+EAHDLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQAL-SSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQAL SSMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]

BLAST of Lag0037596 vs. NCBI nr
Match: XP_022940132.1 (replication factor C subunit 4 [Cucurbita moschata])

HSP 1 Score: 632.9 bits (1631), Expect = 1.8e-177
Identity = 324/337 (96.14%), Postives = 332/337 (98.52%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVD LFAAC+SGNFDLANKEVNNVIAEGYPVAQMLSQIFEVV+EAHDLQDEQ A+IC
Sbjct: 241 PREVVDELFAACRSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQAL-SSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQAL SSMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]

BLAST of Lag0037596 vs. ExPASy Swiss-Prot
Match: Q93ZX1 (Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 4.8e-157
Identity = 280/335 (83.58%), Postives = 307/335 (91.64%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
            RILHI NEEGL+LD EALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEA-HDLQDEQKARI 339
           P +VV+ LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA  D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 340 CKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSM 374
           CK LAE DK LVDGADEYLQLLDV S T+ ALS M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 335

[Close]

BLAST of Lag0037596 vs. ExPASy Swiss-Prot
Match: Q9FXM3 (Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 6.2e-157
Identity = 280/334 (83.83%), Postives = 307/334 (91.92%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPL+ SSQPWVEKYRP+QVKDVAHQ+EVVRVLT TL+TA  PHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  R+GGYPCPP+KIII
Sbjct: 61  AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSA-RKGGYPCPPYKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
            RILHI NEEGL+LDA+AL+TLS+IS GDLRRAITYLQSAARLFGSSISS DLISVSG I
Sbjct: 181 NRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAI 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           P  VV +L A+CKSG FD+ANKEVNN+IA+GYPV+Q++SQ  +V+V A D+ DEQKARIC
Sbjct: 241 PEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSM 374
           KKL EADKCLVDGADEYLQLLDV S+T++AL  M
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVASETIRALFDM 333

[Close]

BLAST of Lag0037596 vs. ExPASy Swiss-Prot
Match: Q99J62 (Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 2.6e-102
Identity = 188/324 (58.02%), Postives = 243/324 (75.00%), Query Frame = 0


Query: 49  PWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQLFGP 108
           PWVEKYRPK V +VA QDEVV VL  +LE A  P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39  PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98

Query: 109 ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 168
           EL++ RVLELNASD+RGI VVR K+K+FA + V SG R  G PCPPFKI+ILDEADSMT 
Sbjct: 99  ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 158

Query: 169 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNE 228
            AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++  +R+L I+ +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEK 218

Query: 229 EGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLIS-VSGVIPRKVVDAL 288
           E + +  E ++ L  IS+GDLR+AIT+LQSA RL G    S+D+I+ ++GVIP   +D +
Sbjct: 219 ENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGI 278

Query: 289 FAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAEADK 348
           F AC SG+FD     V N+I EG+   Q+++Q+ + ++E  +L D+ K+ I +KLAE DK
Sbjct: 279 FTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDK 338

Query: 349 CLVDGADEYLQLLDVVSQTMQALS 372
           CL DGADE+LQL+ + +  MQ L+
Sbjct: 339 CLADGADEHLQLMSLCATVMQQLT 361

[Close]

BLAST of Lag0037596 vs. ExPASy Swiss-Prot
Match: P35249 (Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2)

HSP 1 Score: 372.9 bits (956), Expect = 4.4e-102
Identity = 190/324 (58.64%), Postives = 247/324 (76.23%), Query Frame = 0


Query: 49  PWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQLFGP 108
           PWVEKYRPK V +VA Q+EVV VL  +LE A  P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39  PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98

Query: 109 ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 168
           EL++ RVLELNASD+RGI VVR K+K+FA + V SG R  G PCPPFKI+ILDEADSMT 
Sbjct: 99  ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 158

Query: 169 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNE 228
            AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++  +R+L I+ +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKK 218

Query: 229 EGLNLDAEALSTLSSISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGVIPRKVVDAL 288
           E + +  E ++ L  +S+GDLR+AIT+LQSA RL  G  I+ K +  ++GVIP + +D +
Sbjct: 219 ENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGV 278

Query: 289 FAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAEADK 348
           FAAC+SG+FD     V ++I EG+   Q+++Q+ +VVVE ++L D+QK+ I +KLAE DK
Sbjct: 279 FAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDK 338

Query: 349 CLVDGADEYLQLLDVVSQTMQALS 372
           CL DGADE+LQL+ + +  MQ LS
Sbjct: 339 CLADGADEHLQLISLCATVMQQLS 360

[Close]

BLAST of Lag0037596 vs. ExPASy Swiss-Prot
Match: Q54MD4 (Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=rfc4 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 2.0e-94
Identity = 171/328 (52.13%), Postives = 231/328 (70.43%), Query Frame = 0


Query: 45  QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQ 104
           + ++PWV KYRPK V DV++Q++V+  L  +L T + PH+LFYGPPGTGKT+T LAIA  
Sbjct: 7   KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66

Query: 105 LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEAD 164
           ++GPEL K RVLELNASD+RGI VVRTKIK+FAG AV+        P   FK+IILDEAD
Sbjct: 67  IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126

Query: 165 SMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILH 224
           SMT DAQ ALRRT+ET SK TRF  +CNYISRII+PLASRCAKFRFKPL      +R+  
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186

Query: 225 ISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPRKVV 284
           IS +EG+  +      +  +S GD+R+AITYLQSA R F + IS   + +++G +P +++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246

Query: 285 DALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAE 344
             L   CK  +FD     V ++IA+GYPV+Q++SQ+F+ V+   DL   QK+ I  K+  
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGN 306

Query: 345 ADKCLVDGADEYLQLLDVVSQTMQALSS 373
            D+ L+DG++E+LQL D+ S  M+ L++
Sbjct: 307 VDRNLIDGSEEFLQLFDLSSYIMKQLNN 334

[Close]

BLAST of Lag0037596 vs. ExPASy TrEMBL
Match: A0A6J1IVB8 (replication factor C subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111480296 PE=3 SV=1)

HSP 1 Score: 634.8 bits (1636), Expect = 2.3e-178
Identity = 325/337 (96.44%), Postives = 332/337 (98.52%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHS VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSNVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTL SISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLGSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVD LFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVV+EAHDLQDEQKA+IC
Sbjct: 241 PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQAL-SSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQAL SSMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]

BLAST of Lag0037596 vs. ExPASy TrEMBL
Match: A0A6J1FIS1 (replication factor C subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111445849 PE=3 SV=1)

HSP 1 Score: 632.9 bits (1631), Expect = 8.7e-178
Identity = 324/337 (96.14%), Postives = 332/337 (98.52%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAH+LFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSG+I
Sbjct: 181 KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVD LFAAC+SGNFDLANKEVNNVIAEGYPVAQMLSQIFEVV+EAHDLQDEQ A+IC
Sbjct: 241 PREVVDELFAACRSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQAL-SSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQAL SSMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337

[Close]

BLAST of Lag0037596 vs. ExPASy TrEMBL
Match: A0A1S3B9T6 (LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=LOC103487609 PE=3 SV=1)

HSP 1 Score: 630.6 bits (1625), Expect = 4.3e-177
Identity = 320/336 (95.24%), Postives = 330/336 (98.21%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AI+HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRF FICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFXFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHISNEEGL+LD EALSTLSS+SQGDLRRAITYLQSAARLFGSSISSKDL++VSG+I
Sbjct: 181 KRILHISNEEGLSLDGEALSTLSSMSQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VVDALF ACKSGNFD ANKEVNNV+AEGYPVAQMLSQIFEVV+E +DLQDEQKARIC
Sbjct: 241 PREVVDALFTACKSGNFDTANKEVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQAL SMQL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQALRSMQL 336

[Close]

BLAST of Lag0037596 vs. ExPASy TrEMBL
Match: A0A0A0KYI8 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=3 SV=1)

HSP 1 Score: 626.7 bits (1615), Expect = 6.2e-176
Identity = 317/336 (94.35%), Postives = 329/336 (97.92%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHI NEEGL+LD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDL++VSG+I
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGII 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           P++VVDALF ACKSGNFD ANK+VNNV+AEGYPVAQMLSQIFEVV+E +DLQDEQKARIC
Sbjct: 241 PQEVVDALFVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 376
           KKLAEADKCLVDGADEYLQLLDVVSQTMQ L S+QL
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQVLRSIQL 336

[Close]

BLAST of Lag0037596 vs. ExPASy TrEMBL
Match: A0A6J1C0Y1 (replication factor C subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006413 PE=3 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 4.0e-175
Identity = 321/335 (95.82%), Postives = 326/335 (97.31%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAPL QSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLET+SCPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPLSQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV SGQRQGGYPCPPFKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVGSGQRQGGYPCPPFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
           KRILHI NEE L+LD EALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI
Sbjct: 181 KRILHICNEECLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARIC 339
           PR+VV+ALFAACKSGNFDLANKEVNNV AEGYPVAQMLSQIFEVVVEA+ LQDEQKARIC
Sbjct: 241 PREVVNALFAACKSGNFDLANKEVNNVTAEGYPVAQMLSQIFEVVVEANHLQDEQKARIC 300

Query: 340 KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQ 375
           KKLAEADKCLVDGADEYLQLLDVVSQTMQA  SMQ
Sbjct: 301 KKLAEADKCLVDGADEYLQLLDVVSQTMQASCSMQ 335

[Close]

BLAST of Lag0037596 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 555.4 bits (1430), Expect = 3.4e-158
Identity = 280/335 (83.58%), Postives = 307/335 (91.64%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
            RILHI NEEGL+LD EALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEA-HDLQDEQKARI 339
           P +VV+ LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA  D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 340 CKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSM 374
           CK LAE DK LVDGADEYLQLLDV S T+ ALS M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 335

[Close]

BLAST of Lag0037596 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 533.9 bits (1374), Expect = 1.1e-151
Identity = 273/335 (81.49%), Postives = 300/335 (89.55%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAHQLFG       VLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
            RILHI NEEGL+LD EALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEA-HDLQDEQKARI 339
           P +VV+ LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA  D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 340 CKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSM 374
           CK LAE DK LVDGADEYLQLLDV S T+ ALS M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 328

[Close]

BLAST of Lag0037596 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 527.7 bits (1358), Expect = 7.6e-150
Identity = 270/335 (80.60%), Postives = 296/335 (88.36%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EV            CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
            RILHI NEEGL+LD EALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEA-HDLQDEQKARI 339
           P +VV+ LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA  D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 340 CKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSM 374
           CK LAE DK LVDGADEYLQLLDV S T+ ALS M
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEM 323

[Close]

BLAST of Lag0037596 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 521.9 bits (1343), Expect = 4.1e-148
Identity = 260/309 (84.14%), Postives = 286/309 (92.56%), Query Frame = 0


Query: 40  MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL 99
           MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTL+TA CPHMLFYGPPGTGKTTTAL
Sbjct: 1   MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60

Query: 100 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 159
           AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAV S  RQ GYPCP FKIII
Sbjct: 61  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120

Query: 160 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 219
           LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180

Query: 220 KRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI 279
            RILHI NEEGL+LD EALSTLSSISQGDLRRAITYLQSA RLFGS+I+S DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240

Query: 280 PRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEA-HDLQDEQKARI 339
           P +VV+ LF ACKSG+FD+ANKEV+N++AEGYP +Q+++Q+F++V EA  D+ D QKA+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300

Query: 340 CKKLAEADK 348
           CK LAE DK
Sbjct: 301 CKCLAETDK 309

[Close]

BLAST of Lag0037596 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 196.8 bits (499), Expect = 3.1e-50
Identity = 123/329 (37.39%), Postives = 182/329 (55.32%), Query Frame = 0


Query: 47  SQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQLF 106
           ++PWVEKYRP +V D+   ++ V  L       + P+++  GPPGTGKTT+ LA+AH+L 
Sbjct: 14  NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73

Query: 107 GPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSM 166
           G   YK  VLELNASDDRGI+VVR KIK FA       Q++   P    K++ILDEADSM
Sbjct: 74  GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 133

Query: 167 TEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIS 226
           T  AQ ALRRT+E +S  TRF   CN  ++IIEP+ SRCA  RF  LS++ +  R+L + 
Sbjct: 134 TSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 193

Query: 227 NEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPRKVVDA 286
             E +    E L  +   + GD+R+A+  LQ+    F S ++ +++  V        V  
Sbjct: 194 AAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF-SFVNQENVFKVCDQPHPLHVKN 253

Query: 287 LFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAEAD 346
           +        FD+A   +  +   GY    +++ +F  +++ +D+ +  K    K+   A 
Sbjct: 254 IVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFR-IIKNYDMAEYLKLEFMKETGFAH 313

Query: 347 KCLVDGADEYLQL------LDVVSQTMQA 370
             + DG   YLQL      L +V +T +A
Sbjct: 314 MRICDGVGSYLQLCGLLAKLSIVRETAKA 332

The following BLAST results are available for this feature:

BLAST of Lag0037596 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897028.1	1.9e-179	96.73	replication factor C subunit 4 [Benincasa hispida]	[more]
XP_023523758.1	5.6e-179	97.03	replication factor C subunit 4 [Cucurbita pepo subsp. pepo]	[more]
KAG6608033.1	1.6e-178	96.74	Replication factor C subunit 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022981026.1	4.7e-178	96.44	replication factor C subunit 4 [Cucurbita maxima]	[more]
XP_022940132.1	1.8e-177	96.14	replication factor C subunit 4 [Cucurbita moschata]	[more]

BLAST of Lag0037596 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZX1	4.8e-157	83.58	Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1	[more]
Q9FXM3	6.2e-157	83.83	Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 ...	[more]
Q99J62	2.6e-102	58.02	Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1	[more]
P35249	4.4e-102	58.64	Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2	[more]
Q54MD4	2.0e-94	52.13	Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=...	[more]

BLAST of Lag0037596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVB8	2.3e-178	96.44	replication factor C subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111480296 PE=3 ...	[more]
A0A6J1FIS1	8.7e-178	96.14	replication factor C subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111445849 PE=...	[more]
A0A1S3B9T6	4.3e-177	95.24	LOW QUALITY PROTEIN: replication factor C subunit 4 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0KYI8	6.2e-176	94.35	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G361280 PE=3 SV...	[more]
A0A6J1C0Y1	4.0e-175	95.82	replication factor C subunit 4 OS=Momordica charantia OX=3673 GN=LOC111006413 PE...	[more]

BLAST of Lag0037596 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21690.1	3.4e-158	83.58	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	1.1e-151	81.49	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	7.6e-150	80.60	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	4.1e-148	84.14	ATPase family associated with various cellular activities (AAA)	[more]
AT1G63160.1	3.1e-50	37.39	replication factor C 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 80..213 e-value: 6.9E-14 score: 62.1
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 280..365 e-value: 3.7E-21 score: 75.3
None	No IPR available	GENE3D	1.10.8.60		coord: 215..278 e-value: 5.8E-16 score: 59.9
None	No IPR available	GENE3D	1.20.272.10		coord: 279..369 e-value: 9.7E-32 score: 111.1
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 45..369
None	No IPR available	PANTHER	PTHR11669:SF20	REPLICATION FACTOR C SUBUNIT 4	coord: 45..369
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 213..272 e-value: 3.97608E-14 score: 64.4725
None	No IPR available	CDD	cd00009	AAA	coord: 65..205 e-value: 2.89241E-26 score: 100.683
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 84..211 e-value: 5.9E-17 score: 62.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 42..212 e-value: 4.3E-55 score: 188.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 47..272
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 279..365

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037596.1	Lag0037596.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity