Lag0037575 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037575
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	chr2: 7376287 .. 7377402 (+)
RNA-Seq Expression	Lag0037575
Synteny	Lag0037575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCAAATAACGAAGACGAAATTGTAGAAATGGATGAGGCATCCTCTCACAGTTCCCAAGTTCGTGGATTTCCCGTGGGGTTGGTCTTGATAGGATTATTGAGACCACTGGTAGCAGAGTTTCTATTTCATGGACTCCAGAGCAAGGTAAACCAGTTGGACGAGTAGCAAATATGTTCAACACTGAAATTGGAACACTATCGAGGACTTTCATCCCTTTAAAGTATCATAAGAAGAAAGACATTCCAAACGAAATCATGATGAACATAGTAGAGAGGTTGTTGGTAAGTTAAGTTCGATATTTTCTTATTTTATTTACTATTTAGAGTTTATTAATGCATAGTTCCAATACTAATCACTGTCATGTTTCTTTCCTCTTTTTTAAAGAACAAATTTGATGTAAACTTCTCGGAGTACCATGTTAGGAAATTCATCCTTTACGAGATTGGTAATAGATATAAAGATTGGAGAGCAAGATTACATCGATACTACAAAAAGATTGGTGATCCGGAAGTAGCTCGTACACGTCCACACAAGGATGTCACTCAAGAAGATTGGAACATGTTATGTGATAGATGGGAGACTGCCGATTGGAAGGTAAATATTAACTTAGTTTTAACTAACTTACATTTTGTTATAACTATGCATTCTAATGCAGGTTAAATCAAATAGAAATAAAAATAGCAGAAGTAAACTCCCATTCAACCATTGTGCTGGAACAAATCATTTCTCTCTCATAGAGAAGAAAGGTATGAATTTGTATTTCTTTATAGTTTTCTATATTATATTGTGTTCTTAATGGTCATTTATATGTTTAATAAAAAATGAAGATGGTACATATTGAATCCAATTGAGATGCTTCGTCAAACTCATTGGTCTACTGCAAAAGGATGGACAGACGATGCAGCAAGTCAAGCACATGTAAGTATTAATTGGTTTTATAAGATAACATGTGATATTATGTATATGTATTTATTTTGACATGTATAGGAACAAATGGTGACCTTATCTCAAGAGCAAGCTAGCTCAAGTACACCTTTGAGCGATGAAGAAATTTGGCCACTGTTCTTGGAACGAGATCGTCTTATGTCAAAGGAATGGATATGGACCTAA

mRNA sequence

ATGCTTTCAAATAACGAAGACGAAATTGTAGAAATGGATGAGGCATCCTCTCACAGTTCCCAAGTTCGTGGATTTCCCGTGGGGTTGGTCTTGATAGGATTATTGAGACCACTGGTAGCAGAGTTTCTATTTCATGGACTCCAGAGCAAGAACAAATTTGATGTAAACTTCTCGGAGTACCATGTTAGGAAATTCATCCTTTACGAGATTGGTAATAGATATAAAGATTGGAGAGCAAGATTACATCGATACTACAAAAAGATTGGTGATCCGGAAGTAGCTCGTACACGTCCACACAAGGATGTCACTCAAGAAGATTGGAACATGTTATGTGATAGATGGGAGACTGCCGATTGGAAGGAACAAATGGTGACCTTATCTCAAGAGCAAGCTAGCTCAAGTACACCTTTGAGCGATGAAGAAATTTGGCCACTGTTCTTGGAACGAGATCGTCTTATGTCAAAGGAATGGATATGGACCTAA

Coding sequence (CDS)

ATGCTTTCAAATAACGAAGACGAAATTGTAGAAATGGATGAGGCATCCTCTCACAGTTCCCAAGTTCGTGGATTTCCCGTGGGGTTGGTCTTGATAGGATTATTGAGACCACTGGTAGCAGAGTTTCTATTTCATGGACTCCAGAGCAAGAACAAATTTGATGTAAACTTCTCGGAGTACCATGTTAGGAAATTCATCCTTTACGAGATTGGTAATAGATATAAAGATTGGAGAGCAAGATTACATCGATACTACAAAAAGATTGGTGATCCGGAAGTAGCTCGTACACGTCCACACAAGGATGTCACTCAAGAAGATTGGAACATGTTATGTGATAGATGGGAGACTGCCGATTGGAAGGAACAAATGGTGACCTTATCTCAAGAGCAAGCTAGCTCAAGTACACCTTTGAGCGATGAAGAAATTTGGCCACTGTTCTTGGAACGAGATCGTCTTATGTCAAAGGAATGGATATGGACCTAA

Protein sequence

MLSNNEDEIVEMDEASSHSSQVRGFPVGLVLIGLLRPLVAEFLFHGLQSKNKFDVNFSEYHVRKFILYEIGNRYKDWRARLHRYYKKIGDPEVARTRPHKDVTQEDWNMLCDRWETADWKEQMVTLSQEQASSSTPLSDEEIWPLFLERDRLMSKEWIWT

Homology

[Close]

BLAST of Lag0037575 vs. NCBI nr
Match: XP_022159083.1 (uncharacterized protein LOC111025525 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 8.0e-18
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 52  KFDVNFSEYHVRKFILYEIGNRYKDWRARLHRYYKKIGDPEVARTRPHKDVTQEDWNMLC 111
           KF V+ S+ HV ++ILYEIG R+KD+RA+LHR+YKK  DP  AR +P+KD+ QE WN+LC
Sbjct: 92  KFAVDISQPHVHRYILYEIGTRFKDYRAKLHRHYKKSRDPARARQKPYKDIKQEXWNILC 151

Query: 112 DRWETADWKEQ 123
           DRWE+  WKE+
Sbjct: 152 DRWESPAWKEK 162

[Close]

BLAST of Lag0037575 vs. NCBI nr
Match: XP_038895321.1 (uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 39/75 (52.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 48  QSKNKFDVNFSEYHVRKFILYEIGNRYKDWRARLHRYYKKIGDPEVARTRPHKDVTQEDW 107
           Q  N+FDV+ S+ H++++I YEIGNR+KD+R  L+++Y+K  DP  AR  P+K  T +DW
Sbjct: 208 QLLNQFDVDISQPHIKRYIYYEIGNRFKDYRWTLYKHYQKYADPVEARRNPYKYTTTDDW 267

Query: 108 NMLCDRWETADWKEQ 123
           N+LCDRWE++ WKE+
Sbjct: 268 NILCDRWESSSWKEK 282

[Close]

BLAST of Lag0037575 vs. NCBI nr
Match: XP_038895320.1 (uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 39/75 (52.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 48  QSKNKFDVNFSEYHVRKFILYEIGNRYKDWRARLHRYYKKIGDPEVARTRPHKDVTQEDW 107
           Q  N+FDV+ S+ H++++I YEIGNR+KD+R  L+++Y+K  DP  AR  P+K  T +DW
Sbjct: 208 QLLNQFDVDISQPHIKRYIYYEIGNRFKDYRWTLYKHYQKYADPVEARRNPYKYTTTDDW 267

Query: 108 NMLCDRWETADWKEQ 123
           N+LCDRWE++ WKE+
Sbjct: 268 NILCDRWESSSWKEK 282

[Close]

BLAST of Lag0037575 vs. NCBI nr
Match: XP_038895319.1 (uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 39/75 (52.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 48  QSKNKFDVNFSEYHVRKFILYEIGNRYKDWRARLHRYYKKIGDPEVARTRPHKDVTQEDW 107
           Q  N+FDV+ S+ H++++I YEIGNR+KD+R  L+++Y+K  DP  AR  P+K  T +DW
Sbjct: 208 QLLNQFDVDISQPHIKRYIYYEIGNRFKDYRWTLYKHYQKYADPVEARRNPYKYTTTDDW 267

Query: 108 NMLCDRWETADWKEQ 123
           N+LCDRWE++ WKE+
Sbjct: 268 NILCDRWESSSWKEK 282

[Close]

BLAST of Lag0037575 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-15
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 52  KFDVNFSEYHVRKFILYEIGNRYKDWRARLHRYYKKIGDPEVARTRPHKDVTQEDWNMLC 111
           KF V+ S+ HV ++ILYEIG R+KD+RA+L+R+YKK+ D   AR +P+KD+ QEDWN+LC
Sbjct: 5   KFVVDISQPHVHRYILYEIGTRFKDYRAKLYRHYKKVRDLARARQKPYKDIKQEDWNILC 64

Query: 112 DRWETADWKEQ 123
           D+ E+  WKE+
Sbjct: 65  DKLESLAWKEK 75

The following BLAST results are available for this feature:

BLAST of Lag0037575 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159083.1	8.0e-18	60.56	uncharacterized protein LOC111025525 [Momordica charantia]	[more]
XP_038895321.1	1.5e-16	52.00	uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida]	[more]
XP_038895320.1	1.5e-16	52.00	uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida]	[more]
XP_038895319.1	1.5e-16	52.00	uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida]	[more]
XP_022143616.1	2.2e-15	56.34	uncharacterized protein LOC111013476 [Momordica charantia]	[more]

BLAST of Lag0037575 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037575.1	Lag0037575.1	mRNA