Lag0037572 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037572
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription factor IIIB 90 kDa subunit-like isoform X1
Location	chr2: 7365158 .. 7366980 (-)
RNA-Seq Expression	Lag0037572
Synteny	Lag0037572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAGGTAGTATGTAATTGAATGTTGTAATTTCAGAAGGCTTTCTGTTTTTCTTTTATTTCTTTATTTTATCTTCTTTTTGAACAACAAAGACTTTCTGGTCTTAGTAGATACTAGATTGTCACTGTCCATAGTTTGAAAAGATATAACATCCAGTTATTGAAGCTGATTGCATTTTGATATGGTAAACGCTGCTGTTGTTTTCAGATGAAAACTGCCAATGCATCATTGTTCAGCATGTTCTGCAAACGGAAAGATAAAAGTTCTCCATCCGGTGATGAGTCAGAGGACCTTGGTGATGTTCTTGACAGTGAGGTACCCCTACTACTTAATTGCATTAGCTTTTTGTTTCTTACATTTATGCTAATGGTGTTCTAACCATAGTTTTTTCACGAATTATAGGTGAACTTTTACATAAACAATAAGGAGGAGGCACATTATAAAAAGATTATTTGGGAGAAAATTAACAAAGACTACCTTCAGGTTAAAGGCTTCTTGCCCCTCCACAACCCTTTGATTGCTTCAAAGAAAGTTTTAACTTATAGTTACACTGGGAAAAGGTGATTTACATTTCAATCATAAGAAATGCCATGCATGATTTTCAGGAACAAGCAGCTAAGGAACAAGGTCATCATGTTGCTGGATCTGCAGCTGTGGTTAAAAAGTCAAAGAAGGTATCTTACAAACTGCATCTCACGTTAGATAAGAAGTTCCTTATCCAGAAAAAGATTGAATAGGAGGTTTGCACCTTTACATTTTGTGGTATGATTTATGTTTTCTCATACTGTTGGAAAGCAGAGGCAAAGGAAAAAGGAAGCTCCAACAAATAACCCAGCTCAAGGCGATACAGAAACTACACGTGAAATGCTAACCAAGAAGGTATATCAGCAGAATAAACTGATGATAAATTCATCTGGTGCACATGTGATTTATCCTATTGAGTCTATTCTATTTTCATTTACAGTTGTTAAGTTTCTTAACTTCGCATTCCTCAGGGCTCATTACTTTCCAGTTCACTTAAACCAACTTCTGACTCATAACTATTGCCTAGTTGGTCTTGTATGCACCACATGAATACAATGTGTTTTATGAAATGTGTTGTCGATATTTCTTTTTCTCAAGTAGTTTTTCTTAAGATACACTTGAGTGTAATCCACATGATTATTTTGGCGCAGGGAAGGGAATTTGTTTATGTTATTCCATGGTTTTTTGCATGCTAACTTATATTGTTTGGTTGTGTTACATCAATTCACCCAATGACTTATTTACCACAATCGTTCTCTGCAGAGGCTCAGTTCAAAAGTCAACTTTGATGTGTTGGAAGAACTCTTCTCTGGCACGGTATATTTATCTATCTGTTTCTTCTTTCTTGTTTTGGTATTGTTAAGTTCATCCTAGTAATCGCATGTTCCAAGGTGATTGTAATTGGACTGTCAGTAGAGTACAGTCAAACAACCTTGTCTGAACAAGGGTGGAACAAAGGAGGGAACACAATCTAGCCTTCCTGATTATTTCAGTTAGTATGCAAACACATGATTACTCATAGCTACCTAATAATTTGCGTGCAGCCTGCATCTGGTTCAAACAAAAAGCAGGAAGCCTCGAGTTGTGAAGAGAACAGTTCAGCTGGACAAAGCCACTGTAGGAACCAGCTTGAAGAAGACCTCGAACACTACGACTCCAATGTGGTGTTTGAAGAAGATGTTGACACGGAACATGAAGATCCTGCAGAAACTTATGATAATGAGTATTGTGATTTCGAAAACGAGGAAGAGTATGGTTATGGATATGAAGACTATGGTGCTGATGAGGAATACTAG

mRNA sequence

ATGCAGAAGATGAAAACTGCCAATGCATCATTGTTCAGCATGTTCTGCAAACGGAAAGATAAAAGTTCTCCATCCGGTGATGAGTCAGAGGACCTTGGTGATGTTCTTGACAGTGAGGTGAACTTTTACATAAACAATAAGGAGGAGGCACATTATAAAAAGATTATTTGGGAGAAAATTAACAAAGACTACCTTCAGGAACAAGCAGCTAAGGAACAAGGTCATCATGTTGCTGGATCTGCAGCTGTGGTTAAAAAGTCAAAGAAGAGGCAAAGGAAAAAGGAAGCTCCAACAAATAACCCAGCTCAAGGCGATACAGAAACTACACGTGAAATGCTAACCAAGAAGAGGCTCAGTTCAAAAGTCAACTTTGATGTGTTGGAAGAACTCTTCTCTGGCACGCCTGCATCTGGTTCAAACAAAAAGCAGGAAGCCTCGAGTTGTGAAGAGAACAGTTCAGCTGGACAAAGCCACTGTAGGAACCAGCTTGAAGAAGACCTCGAACACTACGACTCCAATGTGGTGTTTGAAGAAGATGTTGACACGGAACATGAAGATCCTGCAGAAACTTATGATAATGAGTATTGTGATTTCGAAAACGAGGAAGAGTATGGTTATGGATATGAAGACTATGGTGCTGATGAGGAATACTAG

Coding sequence (CDS)

ATGCAGAAGATGAAAACTGCCAATGCATCATTGTTCAGCATGTTCTGCAAACGGAAAGATAAAAGTTCTCCATCCGGTGATGAGTCAGAGGACCTTGGTGATGTTCTTGACAGTGAGGTGAACTTTTACATAAACAATAAGGAGGAGGCACATTATAAAAAGATTATTTGGGAGAAAATTAACAAAGACTACCTTCAGGAACAAGCAGCTAAGGAACAAGGTCATCATGTTGCTGGATCTGCAGCTGTGGTTAAAAAGTCAAAGAAGAGGCAAAGGAAAAAGGAAGCTCCAACAAATAACCCAGCTCAAGGCGATACAGAAACTACACGTGAAATGCTAACCAAGAAGAGGCTCAGTTCAAAAGTCAACTTTGATGTGTTGGAAGAACTCTTCTCTGGCACGCCTGCATCTGGTTCAAACAAAAAGCAGGAAGCCTCGAGTTGTGAAGAGAACAGTTCAGCTGGACAAAGCCACTGTAGGAACCAGCTTGAAGAAGACCTCGAACACTACGACTCCAATGTGGTGTTTGAAGAAGATGTTGACACGGAACATGAAGATCCTGCAGAAACTTATGATAATGAGTATTGTGATTTCGAAAACGAGGAAGAGTATGGTTATGGATATGAAGACTATGGTGCTGATGAGGAATACTAG

Protein sequence

MQKMKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKDYLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVNFDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVDTEHEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY

Homology

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BLAST of Lag0037572 vs. NCBI nr
Match: XP_022142780.1 (transcription factor IIIB 90 kDa subunit-like isoform X1 [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 3.3e-75
Identity = 162/214 (75.70%), Postives = 177/214 (82.71%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           M+T +ASLFSMF K KDKSSPS DESED+GD+L+SEVN Y+NN++EA YKKIIWEKINKD
Sbjct: 1   MRTKDASLFSMFFKXKDKSSPSDDESEDIGDILESEVNLYLNNEKEARYKKIIWEKINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVN 123
           YLQEQAAK+QG  VAG+A VVKKSKKRQRKKEA TN PA+ DTE TREMLTKKRLSSKVN
Sbjct: 61  YLQEQAAKKQGRDVAGAAHVVKKSKKRQRKKEAATNTPAEADTEATREMLTKKRLSSKVN 120

Query: 124 FDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVDTE 183
           FDVL+ELFS  P S SNKKQ AS+CEENSS  QSHCR     DLE  D + V EEDVDTE
Sbjct: 121 FDVLDELFSDMPVSCSNKKQGASNCEENSSFDQSHCR-----DLEDNDPHAVLEEDVDTE 180

Query: 184 HEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
           HEDP ETY NEY D ENEEEYG+ Y DYG DEEY
Sbjct: 181 HEDPTETYGNEYYDIENEEEYGHVYGDYGGDEEY 209

[Close]

BLAST of Lag0037572 vs. NCBI nr
Match: XP_008444162.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31660.1 transcription factor IIIB 90 kDa subunit-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 7.7e-72
Identity = 152/215 (70.70%), Postives = 180/215 (83.72%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MK A+ASLFSMF + KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDT-ETTREMLTKKRLSSKV 123
           YLQ+QAAK+QG ++ G+AAVVKKSKKR+RK EAP N PAQ DT ETT EML KKRLSSK 
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKF 120

Query: 124 NFDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVDT 183
           +FDVL++L   TPA  S++KQ ASSC+ENSS+GQSHC N+LE+D E   +  VFEE++D 
Sbjct: 121 DFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDI 180

Query: 184 EHEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
           E EDP ETY NEY DF+NEEEYGYGY+DYG +EEY
Sbjct: 181 EGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Lag0037572 vs. NCBI nr
Match: XP_016899849.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 1.9e-70
Identity = 152/216 (70.37%), Postives = 180/216 (83.33%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MK A+ASLFSMF + KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKK-RQRKKEAPTNNPAQGDT-ETTREMLTKKRLSSK 123
           YLQ+QAAK+QG ++ G+AAVVKKSKK R+RK EAP N PAQ DT ETT EML KKRLSSK
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKQRKRKIEAPINKPAQADTEETTHEMLIKKRLSSK 120

Query: 124 VNFDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVD 183
            +FDVL++L   TPA  S++KQ ASSC+ENSS+GQSHC N+LE+D E   +  VFEE++D
Sbjct: 121 FDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLD 180

Query: 184 TEHEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
            E EDP ETY NEY DF+NEEEYGYGY+DYG +EEY
Sbjct: 181 IEGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 216

[Close]

BLAST of Lag0037572 vs. NCBI nr
Match: XP_004142699.1 (uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 2.7e-69
Identity = 155/236 (65.68%), Postives = 182/236 (77.12%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MKTA+ASLF MF K KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 1   MKTADASLFGMFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVN 123
           YLQ+QAAK+QG +V G++AVVKKSKKRQRK EAP N PAQ DT TTREM  KKRLSSK N
Sbjct: 61  YLQDQAAKKQGLNVVGASAVVKKSKKRQRKTEAPINMPAQADTGTTREMQIKKRLSSKFN 120

Query: 124 FDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLE--------------- 183
           FDVL++LFS TPA  S++KQ ASSC+ENSS+GQ HCRN+LE+D E               
Sbjct: 121 FDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNE 180

Query: 184 ---HYDSN---VVFEEDVDTE-HEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
              +++ N    +FEE+ D E  EDP ETY NEY DF++EEEYGYGY DYG +EEY
Sbjct: 181 LEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEEY 236

[Close]

BLAST of Lag0037572 vs. NCBI nr
Match: KAE8649624.1 (hypothetical protein Csa_012863 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 2.7e-69
Identity = 155/236 (65.68%), Postives = 182/236 (77.12%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MKTA+ASLF MF K KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 140 MKTADASLFGMFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 199

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVN 123
           YLQ+QAAK+QG +V G++AVVKKSKKRQRK EAP N PAQ DT TTREM  KKRLSSK N
Sbjct: 200 YLQDQAAKKQGLNVVGASAVVKKSKKRQRKTEAPINMPAQADTGTTREMQIKKRLSSKFN 259

Query: 124 FDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLE--------------- 183
           FDVL++LFS TPA  S++KQ ASSC+ENSS+GQ HCRN+LE+D E               
Sbjct: 260 FDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNE 319

Query: 184 ---HYDSN---VVFEEDVDTE-HEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
              +++ N    +FEE+ D E  EDP ETY NEY DF++EEEYGYGY DYG +EEY
Sbjct: 320 LEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEEY 375

[Close]

BLAST of Lag0037572 vs. ExPASy Swiss-Prot
Match: Q92994 (Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-07
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 20  DKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKDYLQEQAAKEQGHHVAG 79
           D    SGD   DL  + D E++ YI N+ EA  K  +W + N +YL+EQ  KE       
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496

Query: 80  SAAVVKKSKKRQRKKEAPTNNPAQGDT--ETTREMLTKKRLSSKVNFDVLEELFSGTPAS 139
              + K+ K    KK      P Q  T  E   +ML +K++SSK+N+ VL  L S   A 
Sbjct: 497 ELGIYKEHKP---KKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGLSS---AG 556

Query: 140 GSNKKQEASSCEENSSA 155
           G +  +E +  E ++SA
Sbjct: 557 GGSPHREDAQPEHSASA 567

[Close]

BLAST of Lag0037572 vs. ExPASy Swiss-Prot
Match: Q8CFK2 (Transcription factor IIIB 90 kDa subunit OS=Mus musculus OX=10090 GN=Brf1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 0


Query: 20  DKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKDYLQEQAAKEQGHHVAG 79
           D    SGD   DL  + D E++ YI N+ EA  K  +W + N +YL+EQ  KE       
Sbjct: 436 DPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARIAKEK 495

Query: 80  SAAVVKKSK-KRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVNFDVLEELFS---GTP 139
              + K+ K K+  K+  P      G  E   +ML +K++SSK+N+ VL +L S   G+P
Sbjct: 496 ELGIYKEHKPKKSCKRREPILASTAG--EAIEKMLEQKKISSKINYSVLRDLNSKGGGSP 555

Query: 140 ASGSNKKQEASSCEENSSAGQSHCRNQLE 165
               ++  E +S ++ S   ++  RN  +
Sbjct: 556 PRDDSQPPERASTKKLSRRKRATTRNSAD 582

[Close]

BLAST of Lag0037572 vs. ExPASy Swiss-Prot
Match: Q9P6R0 (Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brf1 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 7.6e-06
Identity = 33/107 (30.84%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 27  DESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKDYLQEQAAKEQGHHVAGSAAVVKK 86
           +E   L DV D E+   + +K+E   K  +W ++NKDYL E+ AK           +V++
Sbjct: 381 EEEVTLEDVDDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAKNLKLQEDLKKGIVRQ 440

Query: 87  SKKRQRKKEAPTNNPAQGDT--ETTREMLTKKRLSSKVNFDVLEELF 132
            +KR+R +   + +    DT  E+ +EM+ ++  S K+N++ L+ LF
Sbjct: 441 PRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLF 487

[Close]

BLAST of Lag0037572 vs. ExPASy TrEMBL
Match: A0A6J1CLW7 (transcription factor IIIB 90 kDa subunit-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012793 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 162/214 (75.70%), Postives = 177/214 (82.71%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           M+T +ASLFSMF K KDKSSPS DESED+GD+L+SEVN Y+NN++EA YKKIIWEKINKD
Sbjct: 1   MRTKDASLFSMFFKXKDKSSPSDDESEDIGDILESEVNLYLNNEKEARYKKIIWEKINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVN 123
           YLQEQAAK+QG  VAG+A VVKKSKKRQRKKEA TN PA+ DTE TREMLTKKRLSSKVN
Sbjct: 61  YLQEQAAKKQGRDVAGAAHVVKKSKKRQRKKEAATNTPAEADTEATREMLTKKRLSSKVN 120

Query: 124 FDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVDTE 183
           FDVL+ELFS  P S SNKKQ AS+CEENSS  QSHCR     DLE  D + V EEDVDTE
Sbjct: 121 FDVLDELFSDMPVSCSNKKQGASNCEENSSFDQSHCR-----DLEDNDPHAVLEEDVDTE 180

Query: 184 HEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
           HEDP ETY NEY D ENEEEYG+ Y DYG DEEY
Sbjct: 181 HEDPTETYGNEYYDIENEEEYGHVYGDYGGDEEY 209

[Close]

BLAST of Lag0037572 vs. ExPASy TrEMBL
Match: A0A5D3E7S6 (Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00100 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.7e-72
Identity = 152/215 (70.70%), Postives = 180/215 (83.72%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MK A+ASLFSMF + KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDT-ETTREMLTKKRLSSKV 123
           YLQ+QAAK+QG ++ G+AAVVKKSKKR+RK EAP N PAQ DT ETT EML KKRLSSK 
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKF 120

Query: 124 NFDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVDT 183
           +FDVL++L   TPA  S++KQ ASSC+ENSS+GQSHC N+LE+D E   +  VFEE++D 
Sbjct: 121 DFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDI 180

Query: 184 EHEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
           E EDP ETY NEY DF+NEEEYGYGY+DYG +EEY
Sbjct: 181 EGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Lag0037572 vs. ExPASy TrEMBL
Match: A0A1S3B993 (uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.7e-72
Identity = 152/215 (70.70%), Postives = 180/215 (83.72%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MK A+ASLFSMF + KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDT-ETTREMLTKKRLSSKV 123
           YLQ+QAAK+QG ++ G+AAVVKKSKKR+RK EAP N PAQ DT ETT EML KKRLSSK 
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKF 120

Query: 124 NFDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVDT 183
           +FDVL++L   TPA  S++KQ ASSC+ENSS+GQSHC N+LE+D E   +  VFEE++D 
Sbjct: 121 DFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDI 180

Query: 184 EHEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
           E EDP ETY NEY DF+NEEEYGYGY+DYG +EEY
Sbjct: 181 EGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Lag0037572 vs. ExPASy TrEMBL
Match: A0A1S4DV37 (uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 9.1e-71
Identity = 152/216 (70.37%), Postives = 180/216 (83.33%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MK A+ASLFSMF + KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKK-RQRKKEAPTNNPAQGDT-ETTREMLTKKRLSSK 123
           YLQ+QAAK+QG ++ G+AAVVKKSKK R+RK EAP N PAQ DT ETT EML KKRLSSK
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKQRKRKIEAPINKPAQADTEETTHEMLIKKRLSSK 120

Query: 124 VNFDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVFEEDVD 183
            +FDVL++L   TPA  S++KQ ASSC+ENSS+GQSHC N+LE+D E   +  VFEE++D
Sbjct: 121 FDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLD 180

Query: 184 TEHEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
            E EDP ETY NEY DF+NEEEYGYGY+DYG +EEY
Sbjct: 181 IEGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 216

[Close]

BLAST of Lag0037572 vs. ExPASy TrEMBL
Match: A0A0A0L0J7 (BRF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G363410 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.3e-69
Identity = 155/236 (65.68%), Postives = 182/236 (77.12%), Query Frame = 0


Query: 4   MKTANASLFSMFCKRKDKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKD 63
           MKTA+ASLF MF K KDKSSPS D+SEDLGDV DSEVN Y+NN++EAHYKKIIWE+INKD
Sbjct: 61  MKTADASLFGMFFKHKDKSSPSDDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 120

Query: 64  YLQEQAAKEQGHHVAGSAAVVKKSKKRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVN 123
           YLQ+QAAK+QG +V G++AVVKKSKKRQRK EAP N PAQ DT TTREM  KKRLSSK N
Sbjct: 121 YLQDQAAKKQGLNVVGASAVVKKSKKRQRKTEAPINMPAQADTGTTREMQIKKRLSSKFN 180

Query: 124 FDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLE--------------- 183
           FDVL++LFS TPA  S++KQ ASSC+ENSS+GQ HCRN+LE+D E               
Sbjct: 181 FDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNE 240

Query: 184 ---HYDSN---VVFEEDVDTE-HEDPAETYDNEYCDFENEEEYGYGYEDYGADEEY 218
              +++ N    +FEE+ D E  EDP ETY NEY DF++EEEYGYGY DYG +EEY
Sbjct: 241 LEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEEY 296

[Close]

BLAST of Lag0037572 vs. TAIR 10
Match: AT3G09360.1 (Cyclin/Brf1-like TBP-binding protein )

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-18
Identity = 75/220 (34.09%), Postives = 110/220 (50.00%), Query Frame = 0


Query: 20  DKSSPSGDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKDYLQEQAAKEQGHHVA- 79
           ++ + + DES++  D+ D EVN YINN+EE HYK I W ++NKDYL+EQAAKE     A 
Sbjct: 387 EEHADTSDESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAAS 446

Query: 80  ----------------------GSAAVVKKSKKRQRKKEAPTNNPAQGDTETTREMLTKK 139
                                   AA  +K K++++ +EA    P     E  R  L KK
Sbjct: 447 EALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKK 506

Query: 140 RLSSKVNFDVLEELFSGTPASGSNKKQEASSCEENSSAGQSHCRNQLEEDLEHYDSNVVF 199
           RLSS +N+DVLE LF  +    S K+ +  +  E         ++   E+ E+ D     
Sbjct: 507 RLSSVINYDVLESLFDTSAPEKSPKRSKTETDIEKKKEENKEMKSNEHENGENED----- 566

Query: 200 EEDVDTEHEDPAETYDNEYCDFENEEEYGYGYEDYGADEE 217
            ED + E E   E+YD +  DF+N E++   YE+   +EE
Sbjct: 567 -EDEEDEEEGNVESYDMK-TDFQNGEKF---YEEDEEEEE 596

[Close]

BLAST of Lag0037572 vs. TAIR 10
Match: AT4G19550.1 (zinc ion binding;transcription regulators )

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05
Identity = 61/195 (31.28%), Postives = 88/195 (45.13%), Query Frame = 0


Query: 26  GDESEDLGDVLDSEVNFYINNKEEAHYKKIIWEKINKDYLQEQAAKEQGHHVAGSAAVVK 85
           GD +EDL D+ D+EV   ++N +E   KK  WE +N +Y + +  K           V  
Sbjct: 29  GDLAEDLSDISDAEVAENLSNNKEFILKKRAWELMNPEYQKGKYRK-----------VTT 88

Query: 86  KSKKRQRKKEAPTNNPAQGDTETTREMLTKKRLSSKVNFDVLEELFSGTPASGSNKKQEA 145
           + KK    K AP+   +   TE+  E   KKR S ++N++VL++LF        N  + A
Sbjct: 89  RKKKDPANKIAPSKKTSATKTESNAETENKKRPSLEINYNVLDKLF-----DPENSPKRA 148

Query: 146 SSCEENSSAGQ-SHCRNQLEEDLEHYDSNVVFEEDVDTEHEDPAETYDNEYCDFENEEEY 205
              +      Q  + +   EE L    S    EE+ + E  D  E Y NE     NEE Y
Sbjct: 149 KLDKPVVVGDQIEYSKQNSEESL--LKSQYSEEEEEEAEEPDWNEDYSNEDAYRGNEECY 205

Query: 206 G---YGYEDYGADEE 217
           G     +ED   DEE
Sbjct: 209 GNENLEFEDLDDDEE 205

The following BLAST results are available for this feature:

BLAST of Lag0037572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142780.1	3.3e-75	75.70	transcription factor IIIB 90 kDa subunit-like isoform X1 [Momordica charantia]	[more]
XP_008444162.1	7.7e-72	70.70	PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31...	[more]
XP_016899849.1	1.9e-70	70.37	PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo]	[more]
XP_004142699.1	2.7e-69	65.68	uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus]	[more]
KAE8649624.1	2.7e-69	65.68	hypothetical protein Csa_012863 [Cucumis sativus]	[more]

BLAST of Lag0037572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q92994	4.0e-07	34.31	Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV...	[more]
Q8CFK2	1.5e-06	31.54	Transcription factor IIIB 90 kDa subunit OS=Mus musculus OX=10090 GN=Brf1 PE=1 S...	[more]
Q9P6R0	7.6e-06	30.84	Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Lag0037572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLW7	1.6e-75	75.70	transcription factor IIIB 90 kDa subunit-like isoform X1 OS=Momordica charantia ...	[more]
A0A5D3E7S6	3.7e-72	70.70	Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. ma...	[more]
A0A1S3B993	3.7e-72	70.70	uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DV37	9.1e-71	70.37	uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L0J7	1.3e-69	65.68	BRF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G363410 PE=4 S...	[more]

BLAST of Lag0037572 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09360.1	5.2e-18	34.09	Cyclin/Brf1-like TBP-binding protein	[more]
AT4G19550.1	5.0e-05	31.28	zinc ion binding;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.650	Single helix bin	coord: 10..74 e-value: 1.5E-17 score: 65.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..217
IPR011665	Brf1, TBP-binding domain	PFAM	PF07741	BRF1	coord: 34..132 e-value: 1.6E-24 score: 86.1
IPR029529	Transcription factor IIIB subunit Brf1	PANTHER	PTHR11618:SF4	TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT	coord: 22..131
IPR000812	Transcription factor TFIIB	PANTHER	PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 22..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037572.1	Lag0037572.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0070897	transcription preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000126	transcription factor TFIIIB complex
molecular_function	GO:0000995	RNA polymerase III general transcription initiation factor activity