Lag0037566 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037566
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr2: 7314629 .. 7315333 (-)
RNA-Seq Expression	Lag0037566
Synteny	Lag0037566

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGATTGGAAAAATAGCCCAGCGCAAGATTGAAGAACAGTCGGATGCAACCAATGAAGAGATAGTCAACATCAAAGAGAAGGTCCAGAAGATACCTGGAATCGAGTCTGGAATGAGTGAGATGAAGAAATCCATAGCCAATATAGAAGTCCAGACCGCAGAAACTCCTAAGGCTCTAGCTATGATCGCTTTAGAGATAGCGTTGTTGAGGTCTCGTCCAATCGCCTCTGTTGCGGGGGAAGGTTCTTGCCAAAAATCGAAAGAATGGGAGGATACGACTGAGGTTACTGAGTTGAGTGAAGCTGAAGTGTGGAGACAAAGGGTAGAGAAACAAGAAGAAACCCCATGATCGCAACAAGTTCAAGAAAGTTGAGATGTTTGTTTCTGGAGGCAAATAGCCAAACTCGTGGCTATTCCGTGTGGATAGGTATTTTCAAATCCATAAGTTAATTGAAACTTAAAAACTTCTTGTGGTTGTTATTAGCTTTGAAGGTGCCGCACTGAATTGGTACCAAAGCAAGGAGGAGAGGGAAAGAAGATAGGAACAGTTTGTGCCCGTTTCTTGGCCGTTAAGCAAGAATCCACGGTGGCACAATACTGTGAAGACTTTGAAGAACTCGTCGCATTGTTGCCACATTTGACCGATGAAATCCTAGAGAATACGTTCATGAATGGACTTAGACCCAGTGATCCAAGCTGA

mRNA sequence

ATGGGGAGGATTGGAAAAATAGCCCAGCGCAAGATTGAAGAACAGTCGGATGCAACCAATGAAGAGATAGTCAACATCAAAGAGAAGGTCCAGAAGATACCTGGAATCGAGTCTGGAATGAGTGAGATGAAGAAATCCATAGCCAATATAGAAGTCCAGACCGCAGAAACTCCTAAGGCTCTAGCTATGATCGCTTTAGAGATAGCGTTGTTGAGGTCTCGTCCAATCGCCTCTGTTGCGGGGGAAGGTTCTTGCCAAAAATCGAAAGAATGGGAGGATACGACTGAGGTTACTGAGTGCCGCACTGAATTGGTACCAAAGCAAGGAGGAGAGGGAAAGAAGATAGGAACAGTTTGTGCCCGTTTCTTGGCCGTTAAGCAAGAATCCACGGTGGCACAATACTGTGAAGACTTTGAAGAACTCGTCGCATTGTTGCCACATTTGACCGATGAAATCCTAGAGAATACGTTCATGAATGGACTTAGACCCAGTGATCCAAGCTGA

Coding sequence (CDS)

ATGGGGAGGATTGGAAAAATAGCCCAGCGCAAGATTGAAGAACAGTCGGATGCAACCAATGAAGAGATAGTCAACATCAAAGAGAAGGTCCAGAAGATACCTGGAATCGAGTCTGGAATGAGTGAGATGAAGAAATCCATAGCCAATATAGAAGTCCAGACCGCAGAAACTCCTAAGGCTCTAGCTATGATCGCTTTAGAGATAGCGTTGTTGAGGTCTCGTCCAATCGCCTCTGTTGCGGGGGAAGGTTCTTGCCAAAAATCGAAAGAATGGGAGGATACGACTGAGGTTACTGAGTGCCGCACTGAATTGGTACCAAAGCAAGGAGGAGAGGGAAAGAAGATAGGAACAGTTTGTGCCCGTTTCTTGGCCGTTAAGCAAGAATCCACGGTGGCACAATACTGTGAAGACTTTGAAGAACTCGTCGCATTGTTGCCACATTTGACCGATGAAATCCTAGAGAATACGTTCATGAATGGACTTAGACCCAGTGATCCAAGCTGA

Protein sequence

MGRIGKIAQRKIEEQSDATNEEIVNIKEKVQKIPGIESGMSEMKKSIANIEVQTAETPKALAMIALEIALLRSRPIASVAGEGSCQKSKEWEDTTEVTECRTELVPKQGGEGKKIGTVCARFLAVKQESTVAQYCEDFEELVALLPHLTDEILENTFMNGLRPSDPS

Homology

[Close]

BLAST of Lag0037566 vs. NCBI nr
Match: TYK24006.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.8e-11
Identity = 50/157 (31.85%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 7   IAQRKIEEQSDATNEEIVNIKEKVQKIPGIESGMSEMKKSIANIEVQTAETPKALAMIAL 66
           + Q +IEE+ +  ++EI  +K+++ K+P IES +SE+ +S+  + VQ+ +  + L ++  
Sbjct: 1   MVQTRIEERLEQIDQEIFAMKKEIMKVPAIESSLSEISRSLELMRVQSDKHQQMLLLV-- 60

Query: 67  EIALLRSRPIASVAGEGSCQKSKEWEDTTEVTECRTELVPKQGGEGKKIGTVCARFLAVK 126
                    + SV  E    K KE E +T               E  + GT+  +FL +K
Sbjct: 61  ---------MESVMHESVSAKGKEKEASTS---------KSADTESSRDGTLLGKFLRIK 120

Query: 127 QESTVAQYCEDFEELVALLPHLTDEILENTFMNGLRP 164
           QE+TV +Y   F++LVA L  + ++++E+TFMNGL P
Sbjct: 121 QETTVEEYRNLFDKLVAPLSSVQEDVIEDTFMNGLLP 137

[Close]

BLAST of Lag0037566 vs. NCBI nr
Match: KAA0061922.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.8e-11
Identity = 50/157 (31.85%), Postives = 87/157 (55.41%), Query Frame = 0


Query: 7   IAQRKIEEQSDATNEEIVNIKEKVQKIPGIESGMSEMKKSIANIEVQTAETPKALAMIAL 66
           + Q +IEE+ +  ++EI  +K+++ K+P IES +SE+ +S+  + VQ+ +  + L ++  
Sbjct: 1   MVQTRIEERLEQIDQEIFAMKKEIMKVPAIESSLSEISRSLELMRVQSDKHQQMLLLV-- 60

Query: 67  EIALLRSRPIASVAGEGSCQKSKEWEDTTEVTECRTELVPKQGGEGKKIGTVCARFLAVK 126
                    + SV  E    K KE E +T               E  + GT+  +FL +K
Sbjct: 61  ---------MESVMHESVSAKGKEKEASTS---------KSADTESSRDGTLLGKFLRIK 120

Query: 127 QESTVAQYCEDFEELVALLPHLTDEILENTFMNGLRP 164
           QE+TV +Y   F++LVA L  + ++++E+TFMNGL P
Sbjct: 121 QETTVEEYRNLFDKLVAPLSSVQEDVIEDTFMNGLLP 137

[Close]

BLAST of Lag0037566 vs. NCBI nr
Match: TYK01454.1 (uncharacterized protein E5676_scaffold772G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-10
Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 0


Query: 7   IAQRKIEEQSDATNEEIVNIKEKVQKIPGIESGMSEMKKSIANIEVQTAETPKALAMIAL 66
           + Q +IEE+S+  ++EI  IK+++ K+P IESG+S++ K   N+E Q       +  I  
Sbjct: 1   MVQTRIEERSELIDQEITGIKKEIGKLPAIESGLSDIAK---NLEKQQQMLMMMMETIEK 60

Query: 67  EIALLRSRPIASVAGEGSCQKSKE-------------------WEDTTEVTECRTEL--- 126
           +  ++  R   SVA E    K KE                   +E  TE+ E  T+    
Sbjct: 61  DRTVVGERTSESVAHESGIAKGKEDEATSSKAAESGRNIGEDRYEKKTEIEETSTDRSKF 120

Query: 127 ----VPK-----------QGGEGKKIGTVCARFLAVKQESTVAQYCEDFEELVALLPHLT 164
               +P            +     + GTV  +FL +KQE+TV +Y   F++LVA L  + 
Sbjct: 121 KKVEMPMFVRDDPDSWLFRAKRSSRDGTVLGKFLRIKQENTVEEYRNLFDKLVAPLSDVQ 180

[Close]

BLAST of Lag0037566 vs. NCBI nr
Match: KAA0033701.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-10
Identity = 61/200 (30.50%), Postives = 92/200 (46.00%), Query Frame = 0


Query: 1   MGRIGKIAQRKIEEQSDATNEEIVNIKEKVQKIPGIESGMSEMKKSIANIEVQTAETPKA 60
           +GR  K+ Q+ IEE+ DA+ +EI  IK++VQ+IP +E  M +M   +  +       P +
Sbjct: 145 LGRWKKMTQKLIEERLDASEKEIEAIKKEVQRIPVLEKTMEKMHAMLTEMYEDCQRQPGS 204

Query: 61  LAMIALEIALLRSRPIASVAG--EGSCQKSKE-------------------WED------ 120
             +  +     + R    V G  EG    S E                    ED      
Sbjct: 205 SELTGVSTGKRKMRTEDVVDGDEEGETSLSLEPGAGQDRIKFKKLEMPVFNGEDPDGWIY 264

Query: 121 ----------TTEVTECRTELVPKQGGEGKKIGTVCARFLAVKQESTVAQYCEDFEELVA 164
                       E  + +  +V  + G+G + GT CARFLA+KQE +V +Y + FEEL A
Sbjct: 265 RAEHYFQMHLLNEQEKLKIAIVSME-GKGLEYGTGCARFLAIKQEGSVGEYLQRFEELSA 324

[Close]

BLAST of Lag0037566 vs. NCBI nr
Match: TYK02488.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-09
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 116 GTVCARFLAVKQESTVAQYCEDFEELVALLPHLTDEILENTFMNGLRP 164
           G +C +FLA+KQE+TV +YC  F++LVALLPHL  E+LE TFMNGL P
Sbjct: 20  GPICGQFLAIKQETTVEEYCNLFDKLVALLPHLLKEVLEETFMNGLTP 67

The following BLAST results are available for this feature:

BLAST of Lag0037566 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK24006.1	5.8e-11	31.85	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0061922.1	5.8e-11	31.85	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
TYK01454.1	2.9e-10	30.41	uncharacterized protein E5676_scaffold772G00470 [Cucumis melo var. makuwa]	[more]
KAA0033701.1	8.4e-10	30.50	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
TYK02488.1	5.4e-09	64.58	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0037566 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 120..163 e-value: 1.7E-5 score: 25.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037566.1	Lag0037566.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0003676	nucleic acid binding