Lag0037554 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037554
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 7203715 .. 7205839 (+)
RNA-Seq ExpressionLag0037554
SyntenyLag0037554
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGTCGCCGGCCTTCGGAGACGATTACGCCGATGGAACTCACATCCAGTCCTTTTCGACGGCCTCTCTCTTTTCCTCTTCTTCTTCTCGCCGAGATGTTTATTACAGGTTCAATCTAATCTCTGGCTTCTTTCTCACTGTGTAGTTAATTTTTAGTTCTACAAATATCTGTTTCTGCTGTATGGTTTATGAATTACTTTTTGCTTTTTTTTTCCCCTTCTGATCGGAGGGGTGGGTGGAATTGCCTGATTTAAGGGATGAATTGGGTGGATTTCTTGGTTTGTACCTTAATTGAATCGATTTCGAACTGATTAGTATTCCGAAAATTGTGATCCCAACTGGTTTTGGTGTAAGATTGTTTGGGTTGGGTTTCATTGGACTGTAGTTGAGGGGAGTTCAGAAGATTTAAGGGTAAACTGGAATTATAATTTGAGTTTTCTGCGTTTCAATGGAACTGGAGAACAGTCAATAGCTGTAACAGTGCAGAAGTAGCGCACTGATTGGTCTGACCTGTTTAAGAAATTCTTGTAGTTATTAGCATGATGGAGATGGCTAGTCTTTTTAGATTTTGATGAATTTATTCTAACCAACTACAGGGGAACACAGTTCAATATTGAGATGTGATGTGGGATTATTGGTTAAGCTTGAAATTTTACCTACCTGTTAACTTCATTGTAATAATTATGAAATCTGCCATGTGGCTGATTCTGTGTCTTTTTTGCACTTCCTTATTTTTCATATTTGAAATTCTTCCCTCTGCTTTCTCTGGTAGCTATACATTAATTTTTTCTCACGATTCACGAAGATAAAGAGAGAAACAAGTATCCAATGGTGCTTTTATGATAGAGCTTAACTAATAGGTCCTTTTTCTAGATGTTGGAAAGTTGAGTAGGGGCTAATACCGTTTTGGCATTGCAATATCGAACTTAAAATCTATTCTTAGTTGCTCTTTCTAGTGGGGAAGTTTTCTTTTTCACATTTGATTAAAAACAAATGTAGTAGTAAACAAATATTCGATCCCAGACTCAGAGGGATGTCCTAAGAAGATGACCAAAGAGGGTGTTCATCTACTTTCATTGAGGATAATGTGACTTGAATCTTTTTCATAACTCCTTGAAAACGCCTGAGACTGATCCAGACAACAAATCAATCAGTCATGAACCCCTCACATCAGGACACCTCGTAATAATCCTGTTTCTAGGGAAGTTGAAGTTGGTAAATCTATTCCTAAACCTCAGTTTAAGTAAAGACCCTGTTGAACATAAGGATTAAGAAAAAGAAAGGACAAATTTTATGTTAATAAATACCGTGGCAGCCGTTGAGTTCAGAGTACTATGGCTACCCGTGGAATTGGAAACCTTGACATGTGATAGTGGGGGATTCAAGGAGCTTTGTGTTTGGTCAAAATTGAAAATGCTTAATTATTTTCTAATTTTATGTGAAACGGTAGATAATGTCAATTATACATCTGTTGAGTCATCCTCAAAAGTCAAATATATAAGCACAAAATTTAATGGGGCCAACAAAGGATTCCCCAGAATTGGAAATCCTCCAAATCCTTATTTTTCTTAGTTGGCACCTATATACCCACAATCCAAATATATTTGGATGCTTAACCTAAAGTGGGTCCAAATACCATTCCTTTGGTCCAATTTTTTTATGTATTCTATGCATTTCCTGTTTGCTTTCTGGTCAATTTGTAATGCCAATGGTTTATTTCATACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATATATCGACCATCGGCTCTAAATACGGTAAATCAATAAAGCGAGGGATCATATCGTTTCTAAACGTCGACGAGAGCAGATTTACACAGGTTGATGAACTTCAGTGCGTGCCTCATTTCTCAAAGCACTCGTGGGGGCTGTTTCGTCGAAGAATCAAACTACTCTGTCGCAAGTGTGGAAACCATATTGGAAATGCTCACACTAGCCATACTTCCTCCACCCCACTGGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAGGTCTCTAGGTGTACGAAATATGAAGTTAAAATTCGTGCCTTACAACCCTCATCTTCCCACGAATTTGGCCCCCCAGTTATTTAA

mRNA sequence

ATGAAGCAGTCGCCGGCCTTCGGAGACGATTACGCCGATGGAACTCACATCCAGTCCTTTTCGACGGCCTCTCTCTTTTCCTCTTCTTCTTCTCGCCGAGATGTTTATTACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATATATCGACCATCGGCTCTAAATACGGTAAATCAATAAAGCGAGGGATCATATCGTTTCTAAACGTCGACGAGAGCAGATTTACACAGGTTGATGAACTTCAGTGCGTGCCTCATTTCTCAAAGCACTCGTGGGGGCTGTTTCGTCGAAGAATCAAACTACTCTGTCGCAAGTGTGGAAACCATATTGGAAATGCTCACACTAGCCATACTTCCTCCACCCCACTGGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAGGTCTCTAGGTGTACGAAATATGAAGTTAAAATTCGTGCCTTACAACCCTCATCTTCCCACGAATTTGGCCCCCCAGTTATTTAA

Coding sequence (CDS)

ATGAAGCAGTCGCCGGCCTTCGGAGACGATTACGCCGATGGAACTCACATCCAGTCCTTTTCGACGGCCTCTCTCTTTTCCTCTTCTTCTTCTCGCCGAGATGTTTATTACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATATATCGACCATCGGCTCTAAATACGGTAAATCAATAAAGCGAGGGATCATATCGTTTCTAAACGTCGACGAGAGCAGATTTACACAGGTTGATGAACTTCAGTGCGTGCCTCATTTCTCAAAGCACTCGTGGGGGCTGTTTCGTCGAAGAATCAAACTACTCTGTCGCAAGTGTGGAAACCATATTGGAAATGCTCACACTAGCCATACTTCCTCCACCCCACTGGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAGGTCTCTAGGTGTACGAAATATGAAGTTAAAATTCGTGCCTTACAACCCTCATCTTCCCACGAATTTGGCCCCCCAGTTATTTAA

Protein sequence

MKQSPAFGDDYADGTHIQSFSTASLFSSSSSRRDVYYSCGACGYELNLSSSNRNISTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAHTSHTSSTPLVSDGSDSSLPNEVSRCTKYEVKIRALQPSSSHEFGPPVI
Homology
BLAST of Lag0037554 vs. NCBI nr
Match: XP_022135315.1 (uncharacterized protein At4g08330, chloroplastic [Momordica charantia])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 152/168 (90.48%), Postives = 155/168 (92.26%), Query Frame = 0

Query: 1   MKQSPAFGDDYADGTHIQSFSTASLFSSSSSRRDVYYSCGACGYELNLSSSNRNISTIGS 60
           MKQSP  GDDY DGTH  SFS ASL+ SSSSRRDVYYSCGACGYELNLSSSNRN STIGS
Sbjct: 1   MKQSPVVGDDYIDGTHSHSFSAASLY-SSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAH 120
           KYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKCGNHIGNAH
Sbjct: 61  KYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAH 120

Query: 121 TSHTSSTPLVSDGSDSSLPNEVSRCTKYEVKIRALQPSSSHEFGPPVI 169
           TS  SS PLVSDGSDSSLP+EVSRC KYEVKIRALQPSSSH+FGPPVI
Sbjct: 121 TSRASSIPLVSDGSDSSLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI 167

BLAST of Lag0037554 vs. NCBI nr
Match: XP_022937411.1 (uncharacterized protein At4g08330, chloroplastic-like [Cucurbita moschata] >KAG6591891.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024763.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.4 bits (773), Expect = 2.5e-78
Identity = 147/168 (87.50%), Postives = 159/168 (94.64%), Query Frame = 0

Query: 1   MKQSPAFGDDYADGTHIQSFSTASLFSSSSSRRDVYYSCGACGYELNLSSSNRNISTIGS 60
           M+QSP F DD+ +GTH+++FS+ SL   SSSRRDVYYSCGACGYELNLSSSNRNISTIGS
Sbjct: 1   MRQSPVFEDDHVEGTHVRAFSSPSL-CPSSSRRDVYYSCGACGYELNLSSSNRNISTIGS 60

Query: 61  KYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAH 120
           KYGKSIKRGIISFLN+DESRFTQVD+LQCVPHFSKHSWGLF+RRIKLLCRKCGNHIGNA+
Sbjct: 61  KYGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAY 120

Query: 121 TSHTSSTPLVSDGSDSSLPNEVSRCTKYEVKIRALQPSSSHEFGPPVI 169
           TSHTSS+PLVSDGSDSSLPNEVSRC KYEVKIRALQPSSSHE GPPVI
Sbjct: 121 TSHTSSSPLVSDGSDSSLPNEVSRCMKYEVKIRALQPSSSHETGPPVI 167

BLAST of Lag0037554 vs. NCBI nr
Match: XP_022981061.1 (uncharacterized protein At4g08330, chloroplastic [Cucurbita maxima])

HSP 1 Score: 301.6 bits (771), Expect = 4.2e-78
Identity = 151/169 (89.35%), Postives = 158/169 (93.49%), Query Frame = 0

Query: 1   MKQSPAFGDDYADGT-HIQSFSTASLFSSSSSRRDVYYSCGACGYELNLSSSNRNISTIG 60
           M QSP FG DY DGT H+QSFS+ SL+ SSSSRRDVYYSCGACGYELNLSSSNRN STIG
Sbjct: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLY-SSSSRRDVYYSCGACGYELNLSSSNRNTSTIG 60

Query: 61  SKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA 120
           SKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA
Sbjct: 61  SKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA 120

Query: 121 HTSHTSSTPLVSDGSDSSLPNEVSRCTKYEVKIRALQPSSSHEFGPPVI 169
           +TSHT STPLVSDGSDSSLP+EV+RCTKYEVKIRALQPSSSHEF P VI
Sbjct: 121 NTSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 168

BLAST of Lag0037554 vs. NCBI nr
Match: KAG6608059.1 (putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031688.1 putative protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 9.4e-78
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 0

Query: 1   MKQSPAFGDDYADGTHI-QSFSTASLFSSSSSRRDVYYSCGACGYELNLSSSNRNISTIG 60
           M QSP FG DY DGTH  QSFS+ SL+ SSSSRRDVYYSCGACGYELNLSSSNRN STIG
Sbjct: 1   MTQSPDFGGDYTDGTHHGQSFSSTSLY-SSSSRRDVYYSCGACGYELNLSSSNRNTSTIG 60

Query: 61  SKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA 120
           SKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA
Sbjct: 61  SKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA 120

Query: 121 HTSHTSSTPLVSDGSDSSLPNEVSRCTKYEVKIRALQPSSSHEFGPPVI 169
           +TSHT STPLVSDGSDSSLP+EVSRCTKYEVKIRALQPSSSHEF P VI
Sbjct: 121 NTSHTFSTPLVSDGSDSSLPSEVSRCTKYEVKIRALQPSSSHEFDPSVI 168

BLAST of Lag0037554 vs. NCBI nr
Match: XP_023523702.1 (uncharacterized protein At4g08330, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 0

Query: 1   MKQSPAFGDDYADGT-HIQSFSTASLFSSSSSRRDVYYSCGACGYELNLSSSNRNISTIG 60
           M QSP FG DY DGT H+QSFS+ SL+ S+SSRRDVYYSCGACGYELNLSSSNRN STIG
Sbjct: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLY-SASSRRDVYYSCGACGYELNLSSSNRNTSTIG 60

Query: 61  SKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA 120
           SKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA
Sbjct: 61  SKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNA 120

Query: 121 HTSHTSSTPLVSDGSDSSLPNEVSRCTKYEVKIRALQPSSSHEFGPPVI 169
           +TSH+ STPLVSDGSDSSLP+EVSRCTKYEVKIRALQPSSSHEF P VI
Sbjct: 121 NTSHSFSTPLVSDGSDSSLPSEVSRCTKYEVKIRALQPSSSHEFDPSVI 168

BLAST of Lag0037554 vs. ExPASy Swiss-Prot
Match: Q9STN5 (Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g08330 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-44
Identity = 90/142 (63.38%), Postives = 109/142 (76.76%), Query Frame = 0

Query: 19  SFSTASLFSSSSSRRDVYYSCGACGYELNLSSSNRNISTIGSKYGKSIKRGIISFLNVDE 78
           SFS++   SSSSS R V YSCG+CGYELNLSS+NR  STIGSKYGKS+K GIISF N+DE
Sbjct: 23  SFSSS---SSSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDE 82

Query: 79  SRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAHTSHTSSTPLVSDGSDSSL 138
            RF+QVDE QC+PHFS++SWGLFR R KLLCRKC N+IGNA         LV+  SD + 
Sbjct: 83  GRFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTS 142

Query: 139 PNEVSRCTKYEVKIRALQPSSS 161
           P  +   TKY+++IR+LQPSS+
Sbjct: 143 P-RIGSVTKYDIRIRSLQPSSA 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022135315.11.3e-7990.48uncharacterized protein At4g08330, chloroplastic [Momordica charantia][more]
XP_022937411.12.5e-7887.50uncharacterized protein At4g08330, chloroplastic-like [Cucurbita moschata] >KAG6... [more]
XP_022981061.14.2e-7889.35uncharacterized protein At4g08330, chloroplastic [Cucurbita maxima][more]
KAG6608059.19.4e-7889.94putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]... [more]
XP_023523702.11.2e-7788.76uncharacterized protein At4g08330, chloroplastic [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9STN55.4e-4463.38Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33674METHIONINE-S-OXIDE REDUCTASEcoord: 20..166
NoneNo IPR availablePANTHERPTHR33674:SF8NITRATE REDUCTASE [NAD(P)H]-LIKE ISOFORM X1coord: 20..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037554.1Lag0037554.1mRNA