Lag0037551 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037551
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr2: 7178736 .. 7181151 (-)
RNA-Seq Expression	Lag0037551
Synteny	Lag0037551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGGCCACCAAGTTTCTTCGCACTTTAACCAATGCCACCAACAACAACACCTTAATCAACGTTTGTTTGGTCGTTTCCTTTGGCGCACTCACCGCAAGGTCAATCAAGCAGCAGAGGGAAATTGATGCTCTTGAGGCCGAGAAAGATTCACTTCTCAATTCCAATAAAGCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTGTTCGCCGAAGCCTCGTCCGATTCCGCTTTGGTCCCTCTCGCCAGGATCAAAGCTATTTACGGCGAAGCTCCGATATCCTCTTCCGGTAATATACGCTTTTCTTTTTTCTTCGCTCTCGTCTTCTCGGATGATTTTTTTTGTTTTTTGCTTCCTGTTGTTAGAGAATTGAGTGATTAGTAAAATTTTGTCGAAATGTTAGTTACTATTTGAAGGAAATGGTACGAAGCTTGATCCATATAGACTCGTGTTAGAAATTGAGTGTCGTCATCGAGAATTATGCCTCATTCCAAGCATTTCAAGCTCCCTACTCGTAGTTGGAAAATTATTTGGTTCCCTTACTACTTCACGATCCCTTTTAGTCTATCGGTATTGGCCTGATGTCTCTCATCGTCTAATACTGAAGTTGGTTATCATGGATTCTAATTCTCTCAGAACTAACAGCCAAAATCCAGGAAACAAAGAAAGTGAAAGATTATGAATCTAAAGAGAAGGGTTCTCATCACCATTATATGCACAGAGTGTTTGGGAATTGAATGTTCTATTATTGGAGGGTGAAATCGATGACCGAATTTAAGATAAAGAATGAACCAGTTGTCAAAATGGTTTGAAGTTTACTTGCCTGGGCTAGTTTTTTTTTTATTTTTAATTTTTTTTTTTTTTAGGTTGGCGTTTTTTTCCCCCCATTCCCTGTACCTTCAAAATGATGTGCATTGAATTGTATAATGGGATGACCATGTCATTGAATTTATGTTTGTTTAACTGTTCTTTGCTAGTTCATGTTCCTGACCCTGCACAACTGGTGCAAAGGTTTTTCATTATGGGAGAAGAATTTGAGGATAGTACATGCTGCATAAAACTTTACAGGGAGAACATTGTTATTGAGCAGTGATTTTATGAGAAGGAGACACTTGGAAATATTAGATGCAAAAGAAAGTAATTTCTCCTATAGGGAGTTTAAAAAAGGCACTCCAATCGAAGTTAATTACAAAGCCAGAATAGTCACAAAAAGAATTGGAAGGGGAAAATAAAAAGCACATTGAAAATTTCCAAATTATGGCTTCTTCTCAATATCTATCCCTATTTTTAGAAATCTGTTAATTTCTTTCTAGCCACAGGCCCCTACTTCTAGTCCTTGACTGCATTCTTCCATAGGATCTCTGTCTTACCTCTGAAGTTGGGTCTACAGAGAAGCTGCATCAAACTATCCCTAGTCAAGAAATCAAAATCAGAGAAAAAGATGGTATAGAGGACAAGAGCTTTACAAAAACTTTCTGCCCAAGAAAAAAGCTAGTAAATGGCTTTGTGTTTCCTTCGAATCCCTTCCTAATGAGCACCAACTTCGTTGTAAGATCAGCTATAGAGGGAATGAGTTCAATCCATGATGCCACCTACCTAGGATTTAATATCCTACGAGTTTCCTTAGCAACCAAATGTAGTAGGGTCAAGCGGTTGTCCCGTGATATTAGTCGAGGTGCGCGTAAGCTGGTCCGGACACTCACAGATATCAAAAAAAAATTTCCTTTATAGTCTCTCCATCGTGTTTAGCCTTTCAAGTCGCACCAACCAGCAGAAACAGTCAACTTCTTTTGGTCGTTTACCCTTCCAAATTGAGAGTGACAAGTTCCGTCTAGGTAGTGAGGAAATTGCTATCGAGCTGTGATTTACCAATACCAATTGAAATGCATCACTTAGTCAACCTTGTGATAATATATTCCATAACTTGTGGGGACATCCAAAGATCTTTTCTTGGTGGTCATGTTAACAATTGAAATTGAAATGCATGGTTTGATGCAAAATTCCCATTTTTTTTTTTTTTTTGCTTGTTGAGTTCTTGCATAACAATGTTGAGAATATATAAAATGATTACCCATAATAACCATAATTGTACCTGATAGTTTTAAGTCTGTCTCATTTGAGGGTAGTTCAAATCCCACTTGTATAATTTCATTCTCCAATGAGTACATAGTTCAGATATAGAACATATGAATCAAATCCTATCTCTGGTTTTATATATGAAGTCAAATGTTTGCAAGGGAAAGCTTGCCTTCTCAAGTTAACTTATTGAGATCTGAGAAGATGACCATTGTTGTATAAGCTAGTCCTTAGAGATTTGTCCACTGATCCAATTTTTATGGTTCATGCAGGACCAGGAAATGCCGCAACCGAAGATGCAAACTCACAAGGCTCCAAACTTATGGTTTAA

mRNA sequence

ATGGACATGGCCACCAAGTTTCTTCGCACTTTAACCAATGCCACCAACAACAACACCTTAATCAACGTTTGTTTGGTCGTTTCCTTTGGCGCACTCACCGCAAGGTCAATCAAGCAGCAGAGGGAAATTGATGCTCTTGAGGCCGAGAAAGATTCACTTCTCAATTCCAATAAAGCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTGTTCGCCGAAGCCTCGTCCGATTCCGCTTTGGTCCCTCTCGCCAGGATCAAAGCTATTTACGGCGAAGCTCCGATATCCTCTTCCGGACCAGGAAATGCCGCAACCGAAGATGCAAACTCACAAGGCTCCAAACTTATGGTTTAA

Coding sequence (CDS)

ATGGACATGGCCACCAAGTTTCTTCGCACTTTAACCAATGCCACCAACAACAACACCTTAATCAACGTTTGTTTGGTCGTTTCCTTTGGCGCACTCACCGCAAGGTCAATCAAGCAGCAGAGGGAAATTGATGCTCTTGAGGCCGAGAAAGATTCACTTCTCAATTCCAATAAAGCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTGTTCGCCGAAGCCTCGTCCGATTCCGCTTTGGTCCCTCTCGCCAGGATCAAAGCTATTTACGGCGAAGCTCCGATATCCTCTTCCGGACCAGGAAATGCCGCAACCGAAGATGCAAACTCACAAGGCTCCAAACTTATGGTTTAA

Protein sequence

MDMATKFLRTLTNATNNNTLINVCLVVSFGALTARSIKQQREIDALEAEKDSLLNSNKALKKTMWDWKQQLFAEASSDSALVPLARIKAIYGEAPISSSGPGNAATEDANSQGSKLMV

Homology

[Close]

BLAST of Lag0037551 vs. NCBI nr
Match: XP_038897052.1 (uncharacterized protein LOC120085226 [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 1.9e-48
Identity = 106/118 (89.83%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MDMATKFLRTLTNATNNNTLINVCLVVSFGALTARSIKQQREIDALEAEKDSLLNSNKAL 60
           MD+A+KFLRT+TNATNNNTLINVCLV+SFGAL+ARSIKQQREI+ALEAEK SLLNSNKAL
Sbjct: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASSDSALVPLARIKAIYGEAPISSSGPGNAATEDANSQGSKLMV 119
           KKTMWDWKQQLFAEAS+DSALVPLARIKAIYGEAPIS SG G+ ATEDANSQGSKLMV
Sbjct: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPSGVGHVATEDANSQGSKLMV 118

[Close]

BLAST of Lag0037551 vs. NCBI nr
Match: XP_022976887.1 (uncharacterized protein LOC111477117 [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 3.5e-47
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MDMATKFLRTLTNATNNNTLINVCLVVSFGALTARSIKQQREIDALEAEKDSLLNSNKAL 60
           MD+A+KFLRTLTNATNNNTLINVCLV+SFGAL+ARSIKQQREI+ALEAEKDSLLNSNKAL
Sbjct: 1   MDLASKFLRTLTNATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASSDSALVPLARIKAIYGEAPISSSGPGNAATEDANSQGSKLMV 119
           KKTMWDWKQQL++EAS+DSAL+PLARIKAIY EAP+S SG   AAT DANSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSEASTDSALIPLARIKAIYSEAPVSPSGAEQAATGDANSQGSKLMV 118

[Close]

BLAST of Lag0037551 vs. NCBI nr
Match: XP_022937146.1 (uncharacterized protein LOC111443531 [Cucurbita moschata] >XP_023536544.1 uncharacterized protein LOC111797682 [Cucurbita pepo subsp. pepo] >KAG7024766.1 hypothetical protein SDJN02_13584 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 7.9e-47
Identity = 101/118 (85.59%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MDMATKFLRTLTNATNNNTLINVCLVVSFGALTARSIKQQREIDALEAEKDSLLNSNKAL 60
           MD+ATKFLRT+T+ATNNNTLINVCLV+SFGAL+ARSIKQQREI+ALEAEKDSLLNSNK+L
Sbjct: 1   MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 60

Query: 61  KKTMWDWKQQLFAEASSDSALVPLARIKAIYGEAPISSSGPGNAATEDANSQGSKLMV 119
           KKTMWDWKQQL+++AS+DSALVPLARIKAIYGEAP+S SG   AAT DANSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPSGAEQAATGDANSQGSKLMV 118

[Close]

BLAST of Lag0037551 vs. NCBI nr
Match: XP_022140674.1 (uncharacterized protein LOC111011272 [Momordica charantia])

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-46
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MDMATKFLRTLTNATNNNTLINVCLVVSFGALTARSIKQQREIDALEAEKDSLLNSNKAL 60
           MDMATKFLRTLTNA+NN TLINVCLVVSFGAL+ARSIKQQREI+ALEAEKDSLLNSNKAL
Sbjct: 1   MDMATKFLRTLTNASNNKTLINVCLVVSFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASSDSALVPLARIKAIYGEAPISS-SGPGNAATEDANSQGSKLMV 119
           KK+MWDWKQQLFAEASS+SALVPLARIKAIYGE PISS +G G+AATED NSQGSK +V
Sbjct: 61  KKSMWDWKQQLFAEASSESALVPLARIKAIYGEVPISSPTGAGHAATEDENSQGSKFVV 119

[Close]

BLAST of Lag0037551 vs. NCBI nr
Match: KAG6591893.1 (Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 100/117 (85.47%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MDMATKFLRTLTNATNNNTLINVCLVVSFGALTARSIKQQREIDALEAEKDSLLNSNKAL 60
           MD+ATKFLRT+T+ATNNNTLINVCLV+SFGAL+ARSIKQQREI+ALEAEKDSLLNSNK+L
Sbjct: 113 MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 172

Query: 61  KKTMWDWKQQLFAEASSDSALVPLARIKAIYGEAPISSSGPGNAATEDANSQGSKLM 118
           KKTMWDWKQQL+++AS+DSALVPLARIKAIYGEAP+S SG   AAT DANSQGSKLM
Sbjct: 173 KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPSGAEQAATGDANSQGSKLM 229

The following BLAST results are available for this feature:

BLAST of Lag0037551 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897052.1	1.9e-48	89.83	uncharacterized protein LOC120085226 [Benincasa hispida]	[more]
XP_022976887.1	3.5e-47	86.44	uncharacterized protein LOC111477117 [Cucurbita maxima]	[more]
XP_022937146.1	7.9e-47	85.59	uncharacterized protein LOC111443531 [Cucurbita moschata] >XP_023536544.1 unchar...	[more]
XP_022140674.1	1.0e-46	88.24	uncharacterized protein LOC111011272 [Momordica charantia]	[more]
KAG6591893.1	2.3e-46	85.47	Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0037551 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..118
None	No IPR available	PANTHER	PTHR38355	OS06G0149500 PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037551.1	Lag0037551.1	mRNA