Lag0037385 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037385
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSKI/DACH domain-containing protein 1
Locationchr2: 5751931 .. 5752416 (-)
RNA-Seq ExpressionLag0037385
SyntenyLag0037385
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCAGTTTCTCAAATCCAAGTCCGATTTCGACGACCGCCGCCGCCGCCACTGCTGCAAATGGCATCCCAAGCACCGCCAGTCTCCCGGCGTTTGCTCCCTCTGTTTGACCGAAAAGCTCTCGCAAATCCTCTCCGCCACTTCTTCCTCGTCACGTAAAATCTCCGATTCTCTTTCCTCTTCCTCTTCCTCTTCGTATTACTCCTCTGCTTCCTCCTGTTCTTCCTGTTCTTCGCCGAATCCTTACGGCTACAGTTCCACGGATCGCCGTAAGGCCTTGGTGTTTTCGGCGGCGTCTTCGATCTTTAAGAAGAGTAGATCGATGGCGTTCGCGCCGAGATTGAGACGAGCGAGAGAGATTAGCGAGAGTGGAAAGAAGAGTAACCTAGGGTTTTGGTCGAGGTTTCTGAATCGGCCGAGAAGGAAGGAGGTTTTGACGCACTCGAGATCAACTGTTGTTGTGCAGAGGGACGTGCATGGCTGA

mRNA sequence

ATGGCCCAGTTTCTCAAATCCAAGTCCGATTTCGACGACCGCCGCCGCCGCCACTGCTGCAAATGGCATCCCAAGCACCGCCAGTCTCCCGGCGTTTGCTCCCTCTGTTTGACCGAAAAGCTCTCGCAAATCCTCTCCGCCACTTCTTCCTCGTCACGTAAAATCTCCGATTCTCTTTCCTCTTCCTCTTCCTCTTCGTATTACTCCTCTGCTTCCTCCTGTTCTTCCTGTTCTTCGCCGAATCCTTACGGCTACAGTTCCACGGATCGCCGTAAGGCCTTGGTGTTTTCGGCGGCGTCTTCGATCTTTAAGAAGAGTAGATCGATGGCGTTCGCGCCGAGATTGAGACGAGCGAGAGAGATTAGCGAGAGTGGAAAGAAGAGTAACCTAGGGTTTTGGTCGAGGTTTCTGAATCGGCCGAGAAGGAAGGAGGTTTTGACGCACTCGAGATCAACTGTTGTTGTGCAGAGGGACGTGCATGGCTGA

Coding sequence (CDS)

ATGGCCCAGTTTCTCAAATCCAAGTCCGATTTCGACGACCGCCGCCGCCGCCACTGCTGCAAATGGCATCCCAAGCACCGCCAGTCTCCCGGCGTTTGCTCCCTCTGTTTGACCGAAAAGCTCTCGCAAATCCTCTCCGCCACTTCTTCCTCGTCACGTAAAATCTCCGATTCTCTTTCCTCTTCCTCTTCCTCTTCGTATTACTCCTCTGCTTCCTCCTGTTCTTCCTGTTCTTCGCCGAATCCTTACGGCTACAGTTCCACGGATCGCCGTAAGGCCTTGGTGTTTTCGGCGGCGTCTTCGATCTTTAAGAAGAGTAGATCGATGGCGTTCGCGCCGAGATTGAGACGAGCGAGAGAGATTAGCGAGAGTGGAAAGAAGAGTAACCTAGGGTTTTGGTCGAGGTTTCTGAATCGGCCGAGAAGGAAGGAGGTTTTGACGCACTCGAGATCAACTGTTGTTGTGCAGAGGGACGTGCATGGCTGA

Protein sequence

MAQFLKSKSDFDDRRRRHCCKWHPKHRQSPGVCSLCLTEKLSQILSATSSSSRKISDSLSSSSSSSYYSSASSCSSCSSPNPYGYSSTDRRKALVFSAASSIFKKSRSMAFAPRLRRAREISESGKKSNLGFWSRFLNRPRRKEVLTHSRSTVVVQRDVHG
Homology
BLAST of Lag0037385 vs. NCBI nr
Match: XP_022975755.1 (uncharacterized protein LOC111476165 [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 3.6e-50
Identity = 132/167 (79.04%), Postives = 139/167 (83.23%), Query Frame = 0

Query: 1   MAQFLKSKSDFDDRRRRHCCKWHPKHRQSPGVCSLCLTEKLSQILSATSSSSRKISDSLS 60
           MA F KSKSD+DDRRR   CK HPKH QSPGVCSLCL EKLSQI+SAT  SSRK+SDSLS
Sbjct: 1   MANFHKSKSDYDDRRR---CKRHPKHHQSPGVCSLCLAEKLSQIVSAT--SSRKVSDSLS 60

Query: 61  SSSSSSYYSSASSCSSCSSPN-PYGYSSTDRRKALVFSAASSIFKKSRSMAFAPRLRRAR 120
           SS SSSYYSSASSCSSCSSPN PYGY +TDRRKA VFS ASSIFKKSRSMAFAPRL+R  
Sbjct: 61  SSCSSSYYSSASSCSSCSSPNPPYGY-NTDRRKAFVFS-ASSIFKKSRSMAFAPRLKRET 120

Query: 121 EISESGKKSNLGFWSRFLNRPRRK-----EVLTHSRSTVVVQRDVHG 162
           E S+SGK SNLGFWSRFL RPRRK     EVL HSR+  VVQRDVHG
Sbjct: 121 E-SDSGKNSNLGFWSRFLRRPRRKIMEFEEVLMHSRT--VVQRDVHG 157

BLAST of Lag0037385 vs. NCBI nr
Match: KAG7024556.1 (hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 9.8e-48
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 1   MAQFLKSKSDFDDRRRRHCCKWHPKHRQSPGVCSLCLTEKLSQILSATSSSSRKISDSLS 60
           MA F +SKSD+DDRRR   CK HPKH QSPGVCSLCL EKLSQI+S  + SSRK+SDSLS
Sbjct: 1   MANFHRSKSDYDDRRR---CKRHPKHHQSPGVCSLCLAEKLSQIVS--TKSSRKVSDSLS 60

Query: 61  SSSSSSYYSSASSCSSCSSPN-PYGYSSTDRRKALVFSAASSIFKKSRSMAFAPRLRRAR 120
           SS SSSYYSSASSCSSCSSPN PYGY +TDRRKA VFS ASSIFKKSRSMAFAPRLRR  
Sbjct: 61  SSCSSSYYSSASSCSSCSSPNPPYGY-NTDRRKAFVFS-ASSIFKKSRSMAFAPRLRRGT 120

Query: 121 EISESGKKSNLGFWSRFLNRPRRK-----EVLTHSRSTVVVQRDVHG 162
           E S+SGK +NLGFWS+ L RPRRK     EVL HSR+  VVQRDVHG
Sbjct: 121 E-SDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRT--VVQRDVHG 157

BLAST of Lag0037385 vs. NCBI nr
Match: XP_022936383.1 (uncharacterized protein LOC111443018 [Cucurbita moschata])

HSP 1 Score: 199.5 bits (506), Expect = 2.2e-47
Identity = 126/167 (75.45%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 1   MAQFLKSKSDFDDRRRRHCCKWHPKHRQSPGVCSLCLTEKLSQILSATSSSSRKISDSLS 60
           MA F +SKSD+DDRRR   CK HPKH QSPGVCSLCL EKLSQI+S  + SSRK+SDSLS
Sbjct: 1   MANFHRSKSDYDDRRR---CKRHPKHHQSPGVCSLCLAEKLSQIVS--TKSSRKVSDSLS 60

Query: 61  SSSSSSYYSSASSCSSCSSPN-PYGYSSTDRRKALVFSAASSIFKKSRSMAFAPRLRRAR 120
           SS S+SYYSSASSCSSCSSPN PYGY +TDRRKA VFS ASSIFKKSRSMAFAPRLRR  
Sbjct: 61  SSCSTSYYSSASSCSSCSSPNPPYGY-NTDRRKAFVFS-ASSIFKKSRSMAFAPRLRRGT 120

Query: 121 EISESGKKSNLGFWSRFLNRPRRK-----EVLTHSRSTVVVQRDVHG 162
           E S+SGK +NLGFWS+ L RPRRK     EVL HSR+  VVQRDVHG
Sbjct: 121 E-SDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRT--VVQRDVHG 157

BLAST of Lag0037385 vs. NCBI nr
Match: XP_038899400.1 (uncharacterized protein LOC120086706 [Benincasa hispida])

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-44
Identity = 123/170 (72.35%), Postives = 134/170 (78.82%), Query Frame = 0

Query: 1   MAQFLKSKSDFD-DRRRRHCCKWHPKHRQSPGVCSLCLTEKLSQILSA--TSSSSRKISD 60
           MA F KSKSD+D  RRR HCCK HPKH QSPGVCSLCLTEKLS+ILSA  T+SSSRK SD
Sbjct: 1   MANFHKSKSDYDHHRRRNHCCKRHPKHHQSPGVCSLCLTEKLSRILSAATTTSSSRKTSD 60

Query: 61  SLSSSSSSSYYSSASSCSSCSSPNPYGYSSTDRRKALVFSAASSIFKKSRSM-AFAPRLR 120
           SLSSS SSSYYSSASS SSCSSPN Y Y +TDRRK     +ASSIFKKS+SM A  PRL 
Sbjct: 61  SLSSSYSSSYYSSASSSSSCSSPNLYHY-NTDRRKTAFVFSASSIFKKSKSMAAIVPRL- 120

Query: 121 RAREISESGKKSNLGFWSRFLNRPRRK-----EVLTHSRSTVVVQRDVHG 162
           R R  SES KKSNLGFWSRFLNRPRRK     +VL HSR+  +V+R+VHG
Sbjct: 121 RGRTESESEKKSNLGFWSRFLNRPRRKRMEFQDVLMHSRT--IVERNVHG 166

BLAST of Lag0037385 vs. NCBI nr
Match: XP_023524412.1 (uncharacterized protein LOC111788316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 4.7e-42
Identity = 119/172 (69.19%), Postives = 130/172 (75.58%), Query Frame = 0

Query: 1   MAQFLKSKSDFDDRRRRH---CCKWHPKHRQSPGVCSLCLTEKLSQILSATSSSSRKISD 60
           MA   KSKSD+DD RR     CCK HPKHRQSPGVCSLCLTEKLSQILSAT +SSRKISD
Sbjct: 1   MANLHKSKSDYDDLRRHRRCCCCKRHPKHRQSPGVCSLCLTEKLSQILSAT-TSSRKISD 60

Query: 61  SLSSSS--SSSYYSSASSCSSCSSPN-PYGYSSTDRRKALVFSAASSIFKKSRSMAFAPR 120
           SLSSSS  SSSYYSS SSCSSCSSPN PY  ++           ASSI+KKSRSMAFA R
Sbjct: 61  SLSSSSSDSSSYYSSVSSCSSCSSPNRPYDKAT-----------ASSIYKKSRSMAFASR 120

Query: 121 LRRAREISESGKKSNLGFWSRFLNRPRRK-----EVLTHSRSTVVVQRDVHG 162
            RR  + S+SGKKS+LGFWSRFLNRPRRK     E L HSR++ VVQ +VHG
Sbjct: 121 FRRGTD-SDSGKKSHLGFWSRFLNRPRRKRMELEEALMHSRTSAVVQGNVHG 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022975755.13.6e-5079.04uncharacterized protein LOC111476165 [Cucurbita maxima][more]
KAG7024556.19.8e-4876.05hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022936383.12.2e-4775.45uncharacterized protein LOC111443018 [Cucurbita moschata][more]
XP_038899400.11.7e-4472.35uncharacterized protein LOC120086706 [Benincasa hispida][more]
XP_023524412.14.7e-4269.19uncharacterized protein LOC111788316 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..86
NoneNo IPR availablePANTHERPTHR34046:SF7OS06G0218800 PROTEINcoord: 8..152
NoneNo IPR availablePANTHERPTHR34046OS06G0218800 PROTEINcoord: 8..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037385.1Lag0037385.1mRNA