Lag0037361 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037361
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionsignal peptidase complex-like protein DTM1
Locationchr2: 5559121 .. 5559656 (-)
RNA-Seq ExpressionLag0037361
SyntenyLag0037361
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAAGACGCCGCCCTCAAATCCTCTCTGGTTTTCTTGGCCGCCGTCGTCCTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAGATGGCTGTAACTTATCTCGTCGGCGTTTTCGCCATCGCCGGCGTCCTCTTGCCGGACTGGTGCTTCTTTGACCGCGATTTCTCCCGGTGGACTTCTCCGGTCACTGCCGAGGAAAGGGAATCGTATCGGATCTCGACTGGATCCCGGTTTCCCAGGTCGGTTACCTTTAATTTCTTCTCTTCGTGCTCTGTTTCTCTTGTTTGATTGATGCGAGAAGAAAAATTGGGGCGAGAAAATTAGGTTCAGTGTTTTTGCAGTCTCGCTAAATCAATTTCGTAATCGTGTTCATTGAAACTTCTTTTTGATTTTTAGAGTGAGTTTTCGAAATTTTTATTTGAGTTTCTGGAAATTTTTGCAGGTTTAGGATTTATCCAATCAGACTGGTTTTGTACGCCACAGTTTACAGTGTTGCTCTGTACAAGTGGTGGCAATTCGTTTCCAGCTAA

mRNA sequence

ATGGCCGAAGACGCCGCCCTCAAATCCTCTCTGGTTTTCTTGGCCGCCGTCGTCCTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAGATGGCTGTAACTTATCTCGTCGGCGTTTTCGCCATCGCCGGCGTCCTCTTGCCGGACTGGTGCTTCTTTGACCGCGATTTCTCCCGGTGGACTTCTCCGGTCACTGCCGAGGAAAGGGAATCGTATCGGATCTCGACTGGATCCCGGTTTCCCAGGTTTAGGATTTATCCAATCAGACTGGTTTTGTACGCCACAGTTTACAGTGTTGCTCTGTACAAGTGGTGGCAATTCGTTTCCAGCTAA

Coding sequence (CDS)

ATGGCCGAAGACGCCGCCCTCAAATCCTCTCTGGTTTTCTTGGCCGCCGTCGTCCTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAGATGGCTGTAACTTATCTCGTCGGCGTTTTCGCCATCGCCGGCGTCCTCTTGCCGGACTGGTGCTTCTTTGACCGCGATTTCTCCCGGTGGACTTCTCCGGTCACTGCCGAGGAAAGGGAATCGTATCGGATCTCGACTGGATCCCGGTTTCCCAGGTTTAGGATTTATCCAATCAGACTGGTTTTGTACGCCACAGTTTACAGTGTTGCTCTGTACAAGTGGTGGCAATTCGTTTCCAGCTAA

Protein sequence

MAEDAALKSSLVFLAAVVLLVGISTHSFKKMAVTYLVGVFAIAGVLLPDWCFFDRDFSRWTSPVTAEERESYRISTGSRFPRFRIYPIRLVLYATVYSVALYKWWQFVSS
Homology
[Close]
BLAST of Lag0037361 vs. NCBI nr
Match: XP_023524429.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAVVLLVGISTHSFKKMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAAVV+LVGISTHSFKKMAVTYLVGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTAEERESYRISTGSRFPRFRIYPIRLVLYATVYSVALYKWWQFVSS 111
            SPVT EERESYRIST SR PRFRIYPIRL +YA VYSVALYKWW+FVS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of Lag0037361 vs. NCBI nr
Match: XP_022981833.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAVVLLVGISTHSFKKMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAA V+LVGISTHSFKKMAVTYLVGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTAEERESYRISTGSRFPRFRIYPIRLVLYATVYSVALYKWWQFVSS 111
            SPVT EERESYRIST SR PRFRIYPIRL +YATVYS ALYKWW+FVS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

[Close]
BLAST of Lag0037361 vs. NCBI nr
Match: KAG7037595.1 (Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 7.4e-47
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAVVLLVGISTHSFKKMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAA V+LVGISTHSFKKMAVTYLVGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTAEERESYRISTGSRFPRFRIYPIRLVLYATVYSVALYKWWQFVSS 111
            SPVT EERESYRIST SR PRFRIYPIRL +YA VYSVALYKWW+FVS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of Lag0037361 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 9.6e-47
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAVVLLVGISTHSFKKMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAA V+LVGISTHSFKKMAVTYLVGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  TSPVTAEERESYRISTGSRFPRFRIYPIRLVLYATVYSVALYKWWQFVSS 111
            SPVT EERESYRIST SR PRFRIYPIRLV+YA VYSVALYKWW+FVS+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]
BLAST of Lag0037361 vs. NCBI nr
Match: XP_038899258.1 (signal peptidase complex-like protein DTM1 [Benincasa hispida])

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-46
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAVVLLVGISTHSFKKMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLVFLAAVV+LVGI+T+SFKKM VTY VG FAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVFLAAVVVLVGITTYSFKKMVVTYFVGAFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTAEERESYRISTGSRFPRFRIYPIRLVLYATVYSVALYKWWQFVSS 111
           TSPVT EERESYRISTGSRF RFRIYPIRLV+Y TVYSVALYKWWQ+VSS
Sbjct: 61  TSPVTEEERESYRISTGSRFRRFRIYPIRLVVYGTVYSVALYKWWQYVSS 110

[Close]
BLAST of Lag0037361 vs. ExPASy Swiss-Prot
Match: Q7XI45 (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-22
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 0 

Query: 1   MAEDAALKSSLVFLAAVVLLVGISTHSFKKMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60
           M  D  L+ SLV LAA V++ G+ T S +K A TY  G+ AIAGVLLPDW FFDRD+S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  TSPVTAEERESYRISTGSRFP--RFRIYPIRLVLYATVYSVALYKWWQFVSS 111
            +P+ A  R +   +        +F+ YP+R+ +  T+Y   LYKWW +VSS
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

The following BLAST results are available for this feature:
BLAST of Lag0037361 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023524429.12.5e-4790.00signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022981833.14.3e-4789.09signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima][more]
KAG7037595.17.4e-4789.09Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyro... [more]
XP_022940831.19.6e-4789.09signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata][more]
XP_038899258.12.1e-4688.18signal peptidase complex-like protein DTM1 [Benincasa hispida][more]
BLAST of Lag0037361 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7XI453.8e-2246.43Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 108..110
IPR009542Signal peptidase complex subunit Spc1/SPCS1PFAMPF06645SPC12coord: 8..63
e-value: 6.0E-8
score: 32.7
IPR039955Signal peptidase complex-like protein DTM1PANTHERPTHR38354SIGNAL PEPTIDASE COMPLEX-LIKE PROTEIN DTM1coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037361.1Lag0037361.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048658 anther wall tapetum development
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
cellular_component GO:0005789 endoplasmic reticulum membrane