Lag0037348 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037348
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr2: 5433009 .. 5433311 (-)
RNA-Seq Expression	Lag0037348
Synteny	Lag0037348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCAAATGGCGCAATTCTCGTAGCCAAAGCATCAGGTTGGGTCAGAGCTGTGTTTCTTCAAACGAACAGGAAAGCAAACGAGTCGGATGGCAGATTTTGTGGCAAAAAATCAAGAAGGAGAAGAAGAAAATCTTCAGTTCTTCTGTTAAATTTCGTTCTTCTTATAATCCAAATGCTTATGAGTTGAATTTCGATCAAGGAATTGGATGCTCTGAGCCTGATAATCTCTCCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCAATCGTCTCCAGGAACTTGAGATTGTTGGATTGA

mRNA sequence

ATGGGAATCAAATGGCGCAATTCTCGTAGCCAAAGCATCAGGTTGGGTCAGAGCTGTGTTTCTTCAAACGAACAGGAAAGCAAACGAGTCGGATGGCAGATTTTGTGGCAAAAAATCAAGAAGGAGAAGAAGAAAATCTTCAGTTCTTCTGTTAAATTTCGTTCTTCTTATAATCCAAATGCTTATGAGTTGAATTTCGATCAAGGAATTGGATGCTCTGAGCCTGATAATCTCTCCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCAATCGTCTCCAGGAACTTGAGATTGTTGGATTGA

Coding sequence (CDS)

ATGGGAATCAAATGGCGCAATTCTCGTAGCCAAAGCATCAGGTTGGGTCAGAGCTGTGTTTCTTCAAACGAACAGGAAAGCAAACGAGTCGGATGGCAGATTTTGTGGCAAAAAATCAAGAAGGAGAAGAAGAAAATCTTCAGTTCTTCTGTTAAATTTCGTTCTTCTTATAATCCAAATGCTTATGAGTTGAATTTCGATCAAGGAATTGGATGCTCTGAGCCTGATAATCTCTCCAGATCCTTCTCTGCTCGTTTTGCTGATCCATCAATCGTCTCCAGGAACTTGAGATTGTTGGATTGA

Protein sequence

MGIKWRNSRSQSIRLGQSCVSSNEQESKRVGWQILWQKIKKEKKKIFSSSVKFRSSYNPNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD

Homology

[Close]

BLAST of Lag0037348 vs. NCBI nr
Match: KGN60340.2 (hypothetical protein Csa_000895 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 4.4e-38
Identity = 86/101 (85.15%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1    MGIKWRNSRSQSIRLGQSCVSSNEQESKRVGWQILWQKIKKEKKKIFS-SSVKFRSSYNP 60
            MG+KWRNSRSQSIRLGQSCVSSNEQESKR+GWQILW+K+KKEK+K+FS SSV+ RSSYNP
Sbjct: 1030 MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 1089

Query: 61   NAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
            NAY LNFD+    SEPDNLSRSFSARFADPSIVSRNLRLLD
Sbjct: 1090 NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 1130

[Close]

BLAST of Lag0037348 vs. NCBI nr
Match: XP_023536137.1 (uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 8.5e-34
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKR-VGWQILWQKIKKEKKKIFS-SSVKFRSSYN 60
           MGIKWRNSRSQSIRLGQSC SSNEQESKR +GWQILWQK KKEK++IFS SSV+ RSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF+Q    S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Lag0037348 vs. NCBI nr
Match: XP_022936244.1 (uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothetical protein SDJN02_13350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 8.5e-34
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKRV-GWQILWQKIKKEKKKIFS-SSVKFRSSYN 60
           MGIKWRNSRSQSIRLGQSC SSNEQESKR+ GWQILWQK KKEK++IFS SSV+ RSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF+Q    S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Lag0037348 vs. NCBI nr
Match: KAG6591653.1 (hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 5.5e-33
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSNEQESKRV-GWQILWQKIKKEKKKIFS-SSVKFRSSYN 60
           MGIKWRNSRSQSIRLGQSC S NEQESKR+ GWQILWQK KKEK++IFS SSV+ RSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSWNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYELNFDQGIGCSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF+Q    S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of Lag0037348 vs. NCBI nr
Match: KAF3446462.1 (hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis])

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-19
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCV-SSNEQESKRVGWQILWQKIKKEK-KKIFSSSVKFRSSY 60
           MGIK W  S SQSIRLGQ+ + S+N++E  + GW+ +W+KIK++K KK+FSS V  ++SY
Sbjct: 1   MGIKEWYKSGSQSIRLGQNYMQSNNDREQIQDGWRKVWRKIKRDKNKKVFSSPVTLQASY 60

Query: 61  NPNAYELNFDQGIGCSEPDNLSRSFSARFADPS-IVSRNLRLLD 101
           +PN Y  NFDQG+  +EPDNLSRSFSARFADP+ I      LLD
Sbjct: 61  DPNTYSKNFDQGMVWTEPDNLSRSFSARFADPNKIFPTTFSLLD 104

The following BLAST results are available for this feature:

BLAST of Lag0037348 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60340.2	4.4e-38	85.15	hypothetical protein Csa_000895 [Cucumis sativus]	[more]
XP_023536137.1	8.5e-34	80.39	uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]	[more]
XP_022936244.1	8.5e-34	80.39	uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothet...	[more]
KAG6591653.1	5.5e-33	79.41	hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3446462.1	5.9e-19	57.69	hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis]	[more]

BLAST of Lag0037348 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF35	SUBFAMILY NOT NAMED	coord: 8..99
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 8..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037348.1	Lag0037348.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity