Lag0037304 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037304
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionflowering-promoting factor 1-like protein 1
Locationchr2: 5015524 .. 5015892 (+)
RNA-Seq ExpressionLag0037304
SyntenyLag0037304
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGCGTTTGGGTTTTCCGATCCAACGGCGTGATGCGCCTCGTGGAAAACGCCCAGGCAGGCGCCGACTACTCCTCCGACGGCCAGCAGCACCACCACCACCACGGCGGCGGCGGCGGAAGGAAGAAGGTTCTGGTTCATCTTCCGTCCGGGCAGGCGGTTTGTTCGTACGGATTCCTTCAGAAGATTCTGGAAGGATTGGGATGGGAGAGATATTACGAAGGCGATCCAGATTTCTTCCAATTTCACAAGCGATCTTCCATTGATCTGATCTCTCTGCCAATGGACTTCTCGAAATTCAACTCCATTTACATGTACGATCTCGTCGTCAAAAACCCTAACGTCTTCCACGTTCGAGAACCCTAA

mRNA sequence

ATGTCAGGCGTTTGGGTTTTCCGATCCAACGGCGTGATGCGCCTCGTGGAAAACGCCCAGGCAGGCGCCGACTACTCCTCCGACGGCCAGCAGCACCACCACCACCACGGCGGCGGCGGCGGAAGGAAGAAGGTTCTGGTTCATCTTCCGTCCGGGCAGGCGGTTTGTTCGTACGGATTCCTTCAGAAGATTCTGGAAGGATTGGGATGGGAGAGATATTACGAAGGCGATCCAGATTTCTTCCAATTTCACAAGCGATCTTCCATTGATCTGATCTCTCTGCCAATGGACTTCTCGAAATTCAACTCCATTTACATGTACGATCTCGTCGTCAAAAACCCTAACGTCTTCCACGTTCGAGAACCCTAA

Coding sequence (CDS)

ATGTCAGGCGTTTGGGTTTTCCGATCCAACGGCGTGATGCGCCTCGTGGAAAACGCCCAGGCAGGCGCCGACTACTCCTCCGACGGCCAGCAGCACCACCACCACCACGGCGGCGGCGGCGGAAGGAAGAAGGTTCTGGTTCATCTTCCGTCCGGGCAGGCGGTTTGTTCGTACGGATTCCTTCAGAAGATTCTGGAAGGATTGGGATGGGAGAGATATTACGAAGGCGATCCAGATTTCTTCCAATTTCACAAGCGATCTTCCATTGATCTGATCTCTCTGCCAATGGACTTCTCGAAATTCAACTCCATTTACATGTACGATCTCGTCGTCAAAAACCCTAACGTCTTCCACGTTCGAGAACCCTAA

Protein sequence

MSGVWVFRSNGVMRLVENAQAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYGFLQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVREP
Homology
BLAST of Lag0037304 vs. NCBI nr
Match: XP_004136318.1 (flowering-promoting factor 1-like protein 2 [Cucumis sativus] >KGN60157.1 hypothetical protein Csa_002053 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 1.7e-60
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDGQQH-HHHHGGGGGRKKVLVHLPSGQAVCSYG 60
           MSGVWVFRSNGVMRLVEN+QAG DYSSDG  H HHHHGGGGGRKKVLVHLPSGQ VCSYG
Sbjct: 1   MSGVWVFRSNGVMRLVENSQAGDDYSSDGHGHQHHHHGGGGGRKKVLVHLPSGQPVCSYG 60

Query: 61  FLQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHV 120
           FLQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYM+DLV+KNPNVFHV
Sbjct: 61  FLQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMFDLVIKNPNVFHV 120

Query: 121 REP 123
           REP
Sbjct: 121 REP 123

BLAST of Lag0037304 vs. NCBI nr
Match: XP_023536365.1 (flowering-promoting factor 1-like protein 2 [Cucurbita pepo subsp. pepo] >KAG6591620.1 Flowering-promoting factor 1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024503.1 Flowering-promoting factor 1-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.3 bits (617), Expect = 2.2e-60
Identity = 114/122 (93.44%), Postives = 115/122 (94.26%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYGF 60
           MSGVWVFRSNGVMRLVENAQAG DYSSDG  HHHHH  GGGRKK+LVHLPSGQ V SYGF
Sbjct: 1   MSGVWVFRSNGVMRLVENAQAGGDYSSDGHHHHHHHHNGGGRKKILVHLPSGQPVTSYGF 60

Query: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR 120
           LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR
Sbjct: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR 120

Query: 121 EP 123
           EP
Sbjct: 121 EP 122

BLAST of Lag0037304 vs. NCBI nr
Match: XP_008466327.1 (PREDICTED: flowering-promoting factor 1-like protein 2 [Cucumis melo] >KAA0052786.1 flowering-promoting factor 1-like protein 2 [Cucumis melo var. makuwa] >TYK08705.1 flowering-promoting factor 1-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 6.4e-60
Identity = 118/129 (91.47%), Postives = 119/129 (92.25%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDG--QQHHHHH-----GGGGGRKKVLVHLPSGQ 60
           MSGVWVFRSNGVMRLVEN+QAG DYSSDG  Q HHHHH     GGGGGRKKVLVHLPSGQ
Sbjct: 1   MSGVWVFRSNGVMRLVENSQAGDDYSSDGHHQHHHHHHHHHGGGGGGGRKKVLVHLPSGQ 60

Query: 61  AVCSYGFLQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKN 120
            VCSYGFLQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKN
Sbjct: 61  PVCSYGFLQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKN 120

Query: 121 PNVFHVREP 123
           PNVFHVREP
Sbjct: 121 PNVFHVREP 129

BLAST of Lag0037304 vs. NCBI nr
Match: XP_022937028.1 (flowering-promoting factor 1-like protein 2 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 114/122 (93.44%), Postives = 115/122 (94.26%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYGF 60
           MSGVWVFRSNGVMRLVENAQAG DYSSDG  HHHHH  GGGRKK+LVHLPSGQ V SYGF
Sbjct: 1   MSGVWVFRSNGVMRLVENAQAGGDYSSDGHHHHHHH-NGGGRKKILVHLPSGQPVTSYGF 60

Query: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR 120
           LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR
Sbjct: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR 120

Query: 121 EP 123
           EP
Sbjct: 121 EP 121

BLAST of Lag0037304 vs. NCBI nr
Match: XP_022976219.1 (flowering-promoting factor 1-like protein 2 [Cucurbita maxima])

HSP 1 Score: 234.2 bits (596), Expect = 6.0e-58
Identity = 113/122 (92.62%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYGF 60
           MSGVWVFRSNGVMRLVENAQAG DYSSDG   HHHH  GGGRKK+LVHLPSGQ V SYGF
Sbjct: 1   MSGVWVFRSNGVMRLVENAQAGGDYSSDG---HHHHHNGGGRKKILVHLPSGQPVTSYGF 60

Query: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR 120
           LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR
Sbjct: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR 119

Query: 121 EP 123
           EP
Sbjct: 121 EP 119

BLAST of Lag0037304 vs. ExPASy Swiss-Prot
Match: Q5Q0B3 (Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLP1 PE=2 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-35
Identity = 79/128 (61.72%), Postives = 89/128 (69.53%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDGQQHHHHHGGGGG-----RKKVLVHLPSGQAV 60
           MSGVWVF  NGVMRLVEN      Y+            GG      R+K+LVHLPS + V
Sbjct: 1   MSGVWVFNKNGVMRLVEN-----PYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVV 60

Query: 61  CSYGFLQKILEGLGWERYYEGD--PDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKN 120
            SYG L+KIL+ LGWERYY GD      QFHKR+SIDLISLP DFSKFNSI+MYD+VVKN
Sbjct: 61  SSYGSLEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHMYDIVVKN 120

Query: 121 PNVFHVRE 122
           PNVFHVR+
Sbjct: 121 PNVFHVRD 123

BLAST of Lag0037304 vs. ExPASy Swiss-Prot
Match: Q9LXB5 (Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLP2 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-35
Identity = 76/121 (62.81%), Postives = 90/121 (74.38%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYGF 60
           MSGVWVF +NGV+RLVEN       S+  Q H        GR+ VLV+LP+G+AV SY  
Sbjct: 1   MSGVWVF-NNGVIRLVENPNQSGGVST--QSH--------GRRNVLVYLPTGEAVSSYSS 60

Query: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHVR 120
           L++IL  LGWERY+ GD D  Q+HKRSSIDLISLP DFSKFNS+YMYD+VVKNPN FHVR
Sbjct: 61  LEQILRSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVR 110

Query: 121 E 122
           +
Sbjct: 121 D 110

BLAST of Lag0037304 vs. ExPASy Swiss-Prot
Match: O23624 (Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-33
Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENA-QAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYG 60
           MSGVWVF+ NGV+RLVEN  Q+G+D  +              R+KV+V+LP+G+ V SY 
Sbjct: 1   MSGVWVFK-NGVIRLVENPNQSGSDTQN--------------RRKVMVYLPTGEVVSSYS 60

Query: 61  FLQKILEGLGWERYY-EGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFH 120
            L++IL+ LGWERY+  GD D  QFHKRSSIDLISLP DF+KFNS+YMYD+VVKNPN FH
Sbjct: 61  TLEQILQSLGWERYFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFH 108

Query: 121 VRE 122
           VR+
Sbjct: 121 VRD 108

BLAST of Lag0037304 vs. ExPASy Swiss-Prot
Match: O24340 (Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.1e-33
Identity = 73/123 (59.35%), Postives = 91/123 (73.98%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENA-QAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYG 60
           MSGVWVF+ NGV+RLVEN  Q+G D +S              R+KV+V+LP+G+ + SY 
Sbjct: 1   MSGVWVFK-NGVIRLVENPNQSGGDTNS--------------RRKVMVYLPTGEVISSYS 60

Query: 61  FLQKILEGLGWERYY-EGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFH 120
            L++IL  LGWERY+  GD D  QFHKRSSIDLISLP DF+KF+S+YMYD+VVKNPN FH
Sbjct: 61  TLEQILRSLGWERYFGGGDTDLLQFHKRSSIDLISLPKDFTKFSSVYMYDIVVKNPNYFH 108

Query: 121 VRE 122
           VR+
Sbjct: 121 VRD 108

BLAST of Lag0037304 vs. ExPASy Swiss-Prot
Match: Q9LGE3 (Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RAA1 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 70/119 (58.82%), Postives = 81/119 (68.07%), Query Frame = 0

Query: 1   MSGVWVFRSNGVMRLVENAQAGADYSSDGQQHHHHHGGGGGRKKVLVHLPSGQAVCSYGF 60
           MSGVWVF+ NGV+RLVE  QA A  +             GGR+K LVH PSGQ V SY  
Sbjct: 1   MSGVWVFK-NGVVRLVEKQQATAGTAV-----------AGGRRKALVHTPSGQVVSSYAA 60

Query: 61  LQKILEGLGWERYYEGDPDFFQFHKRSSIDLISLPMDFSKFNSIYMYDLVVKNPNVFHV 120
           L+  L  LGWERYYE DP  FQFHKR S+DLISLP DFS F+S++MYD+VVKN + F V
Sbjct: 61  LEARLTALGWERYYE-DPSLFQFHKRGSLDLISLPADFSAFSSVHMYDIVVKNRDSFRV 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004136318.11.7e-6093.50flowering-promoting factor 1-like protein 2 [Cucumis sativus] >KGN60157.1 hypoth... [more]
XP_023536365.12.2e-6093.44flowering-promoting factor 1-like protein 2 [Cucurbita pepo subsp. pepo] >KAG659... [more]
XP_008466327.16.4e-6091.47PREDICTED: flowering-promoting factor 1-like protein 2 [Cucumis melo] >KAA005278... [more]
XP_022937028.12.4e-5993.44flowering-promoting factor 1-like protein 2 [Cucurbita moschata][more]
XP_022976219.16.0e-5892.62flowering-promoting factor 1-like protein 2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q5Q0B31.2e-3561.72Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=F... [more]
Q9LXB51.5e-3562.81Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=F... [more]
O236241.1e-3360.16Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1[more]
O243404.1e-3359.35Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1[more]
Q9LGE32.7e-2958.82Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica OX=3... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039274Flowering-promoting factor 1PANTHERPTHR33433FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1coord: 1..121
NoneNo IPR availablePANTHERPTHR33433:SF15FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 2coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037304.1Lag0037304.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009909 regulation of flower development
biological_process GO:0010228 vegetative to reproductive phase transition of meristem