Lag0037140 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037140
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF1677)
Location	chr2: 3701335 .. 3701781 (-)
RNA-Seq Expression	Lag0037140
Synteny	Lag0037140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGAAAGTGACGAAGGTGATCGCCGGCATCGAGCAGGCGGCTCCGGTGACGCAACACAACGCTCAAGTAATCGACGTCGAGTCTGTGAAATGCGAGTGCTGTGGATTGACGGAGGAGTGTACTCCAGCGTACATCACTCGTGTGCGGGAGAGGTATGAAGGCCGTTGGATTTGTGGACTCTGTGCGGAGGCTGTGAAAGACGAGTCTCTCAGATCTCAGAGCAAGATCACCACCGGTGAAGCCGTGAAGAGGCACATGAAGTTTCACAAAGCATTCAAATCTTCAATTCCGCCGGTGAATCCGACTGAGGATTTGATTTCGGCTATGAAACAGCTTCTCCGGCGATCGCTGGACTCTCCAAAGAAGGACGCCTCGCGATCGCTTGGCCGTTCCAGTAGCTGTTTCTCCGCCTTGCCGGGGCGGCGAAGTCATTATAATTAG

mRNA sequence

ATGGCGGCGAAAGTGACGAAGGTGATCGCCGGCATCGAGCAGGCGGCTCCGGTGACGCAACACAACGCTCAAGTAATCGACGTCGAGTCTGTGAAATGCGAGTGCTGTGGATTGACGGAGGAGTGTACTCCAGCGTACATCACTCGTGTGCGGGAGAGGTATGAAGGCCGTTGGATTTGTGGACTCTGTGCGGAGGCTGTGAAAGACGAGTCTCTCAGATCTCAGAGCAAGATCACCACCGGTGAAGCCGTGAAGAGGCACATGAAGTTTCACAAAGCATTCAAATCTTCAATTCCGCCGGTGAATCCGACTGAGGATTTGATTTCGGCTATGAAACAGCTTCTCCGGCGATCGCTGGACTCTCCAAAGAAGGACGCCTCGCGATCGCTTGGCCGTTCCAGTAGCTGTTTCTCCGCCTTGCCGGGGCGGCGAAGTCATTATAATTAG

Coding sequence (CDS)

ATGGCGGCGAAAGTGACGAAGGTGATCGCCGGCATCGAGCAGGCGGCTCCGGTGACGCAACACAACGCTCAAGTAATCGACGTCGAGTCTGTGAAATGCGAGTGCTGTGGATTGACGGAGGAGTGTACTCCAGCGTACATCACTCGTGTGCGGGAGAGGTATGAAGGCCGTTGGATTTGTGGACTCTGTGCGGAGGCTGTGAAAGACGAGTCTCTCAGATCTCAGAGCAAGATCACCACCGGTGAAGCCGTGAAGAGGCACATGAAGTTTCACAAAGCATTCAAATCTTCAATTCCGCCGGTGAATCCGACTGAGGATTTGATTTCGGCTATGAAACAGCTTCTCCGGCGATCGCTGGACTCTCCAAAGAAGGACGCCTCGCGATCGCTTGGCCGTTCCAGTAGCTGTTTCTCCGCCTTGCCGGGGCGGCGAAGTCATTATAATTAG

Protein sequence

MAAKVTKVIAGIEQAAPVTQHNAQVIDVESVKCECCGLTEECTPAYITRVRERYEGRWICGLCAEAVKDESLRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLLRRSLDSPKKDASRSLGRSSSCFSALPGRRSHYN

Homology

[Close]

BLAST of Lag0037140 vs. NCBI nr
Match: XP_023536550.1 (uncharacterized protein LOC111797685 [Cucurbita pepo subsp. pepo] >XP_023536551.1 uncharacterized protein LOC111797685 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.2 bits (718), Expect = 5.2e-72
Identity = 139/148 (93.92%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAAKVTKVIAGIEQAAPVTQHNAQVIDVESVKCECCGLTEECTPAYITRVRERYEGRWIC 60
           MAAKVTK I+GIEQ APVTQHNAQVIDVESVKCECCGLTEECTPAYI RVRERYEGRWIC
Sbjct: 1   MAAKVTKAISGIEQTAPVTQHNAQVIDVESVKCECCGLTEECTPAYIGRVRERYEGRWIC 60

Query: 61  GLCAEAVKDESLRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLLRRSLD 120
           GLCAEAVKDESLRSQS ITTGEAVKRHMKFHKAFKSSIPP+NPTEDLISAMKQLLRRSLD
Sbjct: 61  GLCAEAVKDESLRSQSNITTGEAVKRHMKFHKAFKSSIPPLNPTEDLISAMKQLLRRSLD 120

Query: 121 SPKKDASRSLGRSSSCFSALPGRRSHYN 149
           SPKKD SRSLGRSSSCFSA+PGRRSHY+
Sbjct: 121 SPKKDTSRSLGRSSSCFSAMPGRRSHYD 148

[Close]

BLAST of Lag0037140 vs. NCBI nr
Match: KAG6591497.1 (hypothetical protein SDJN03_13843, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024382.1 hypothetical protein SDJN02_13196, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 137/148 (92.57%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAAKVTKVIAGIEQAAPVTQHNAQVIDVESVKCECCGLTEECTPAYITRVRERYEGRWIC 60
           MAAKVTK I+GIEQ APVTQHNAQVIDVESVKCECCGLTEECTPAYI RVRERYEGRWIC
Sbjct: 1   MAAKVTKAISGIEQTAPVTQHNAQVIDVESVKCECCGLTEECTPAYIGRVRERYEGRWIC 60

Query: 61  GLCAEAVKDESLRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLLRRSLD 120
           GLCAEAVKDESLRSQS ITTGEAVKRHMKFHKAFKSSIPP+NPTEDLISAMKQLLRRSLD
Sbjct: 61  GLCAEAVKDESLRSQSNITTGEAVKRHMKFHKAFKSSIPPLNPTEDLISAMKQLLRRSLD 120

Query: 121 SPKKDASRSLGRSSSCFSALPGRRSHYN 149
           SPKKD SRSLGRS+SCFSA+PGRR+HY+
Sbjct: 121 SPKKDTSRSLGRSNSCFSAMPGRRNHYD 148

[Close]

BLAST of Lag0037140 vs. NCBI nr
Match: XP_022982073.1 (uncharacterized protein LOC111481029 [Cucurbita maxima] >KAG6608330.1 hypothetical protein SDJN03_01672, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037679.1 hypothetical protein SDJN02_01309, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 7.5e-71
Identity = 136/148 (91.89%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAAKVTKVIAGIEQAAPVTQHNAQVIDVESVKCECCGLTEECTPAYITRVRERYEGRWIC 60
           MAAKVTKVIA IEQ+ PVTQHNAQVIDVES+KCECCGLTEECTPAYI RVRERYEGRWIC
Sbjct: 1   MAAKVTKVIASIEQSIPVTQHNAQVIDVESIKCECCGLTEECTPAYIARVRERYEGRWIC 60

Query: 61  GLCAEAVKDESLRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLLRRSLD 120
           GLCAEAVKDES+RSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQL RRSLD
Sbjct: 61  GLCAEAVKDESIRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLFRRSLD 120

Query: 121 SPKKDASRSLGRSSSCFSALPGRRSHYN 149
           SPKKDASRSLGRS+SCFS++P RRSHY+
Sbjct: 121 SPKKDASRSLGRSNSCFSSMPRRRSHYD 148

[Close]

BLAST of Lag0037140 vs. NCBI nr
Match: XP_022977134.1 (uncharacterized protein LOC111477296 [Cucurbita maxima] >XP_022977135.1 uncharacterized protein LOC111477296 [Cucurbita maxima] >XP_022977136.1 uncharacterized protein LOC111477296 [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 7.5e-71
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAAKVTKVIAGIEQAAPVTQHNAQVIDVESVKCECCGLTEECTPAYITRVRERYEGRWIC 60
           MAAKVTK I+GIEQ A VTQHNAQVIDVESVKCECCGLTEECTPAYI RVRERYEGRWIC
Sbjct: 1   MAAKVTKAISGIEQMALVTQHNAQVIDVESVKCECCGLTEECTPAYIGRVRERYEGRWIC 60

Query: 61  GLCAEAVKDESLRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLLRRSLD 120
           GLCAEAVKDESLRSQS ITTGEAVKRHMKFHKAFKSSIPP+NPTEDLISAMKQLLRRSLD
Sbjct: 61  GLCAEAVKDESLRSQSNITTGEAVKRHMKFHKAFKSSIPPLNPTEDLISAMKQLLRRSLD 120

Query: 121 SPKKDASRSLGRSSSCFSALPGRRSHYN 149
           SPKKDASRSLGRS+SCFSA+PGRRSHY+
Sbjct: 121 SPKKDASRSLGRSNSCFSAMPGRRSHYD 148

[Close]

BLAST of Lag0037140 vs. NCBI nr
Match: XP_022936502.1 (uncharacterized protein LOC111443099 [Cucurbita moschata] >XP_022936504.1 uncharacterized protein LOC111443099 [Cucurbita moschata] >XP_022936505.1 uncharacterized protein LOC111443099 [Cucurbita moschata])

HSP 1 Score: 277.3 bits (708), Expect = 7.5e-71
Identity = 136/148 (91.89%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAAKVTKVIAGIEQAAPVTQHNAQVIDVESVKCECCGLTEECTPAYITRVRERYEGRWIC 60
           MAAKVTK I+GIEQ APVTQHNAQVIDVESVKCECCGLTEECTPAYI RVRERYEGRWIC
Sbjct: 1   MAAKVTKAISGIEQTAPVTQHNAQVIDVESVKCECCGLTEECTPAYIGRVRERYEGRWIC 60

Query: 61  GLCAEAVKDESLRSQSKITTGEAVKRHMKFHKAFKSSIPPVNPTEDLISAMKQLLRRSLD 120
           GLCAEAVKDESLRSQS ITTGEAVKRHMKFHKAFKSSIPP+NPTEDLISAMKQLLRRSLD
Sbjct: 61  GLCAEAVKDESLRSQSNITTGEAVKRHMKFHKAFKSSIPPLNPTEDLISAMKQLLRRSLD 120

Query: 121 SPKKDASRSLGRSSSCFSALPGRRSHYN 149
           SPKKD SRSLGRS+SCFSA+PGR++HY+
Sbjct: 121 SPKKDTSRSLGRSNSCFSAMPGRQNHYD 148

The following BLAST results are available for this feature:

BLAST of Lag0037140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536550.1	5.2e-72	93.92	uncharacterized protein LOC111797685 [Cucurbita pepo subsp. pepo] >XP_023536551....	[more]
KAG6591497.1	2.6e-71	92.57	hypothetical protein SDJN03_13843, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022982073.1	7.5e-71	91.89	uncharacterized protein LOC111481029 [Cucurbita maxima] >KAG6608330.1 hypothetic...	[more]
XP_022977134.1	7.5e-71	93.24	uncharacterized protein LOC111477296 [Cucurbita maxima] >XP_022977135.1 uncharac...	[more]
XP_022936502.1	7.5e-71	91.89	uncharacterized protein LOC111443099 [Cucurbita moschata] >XP_022936504.1 unchar...	[more]

BLAST of Lag0037140 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012876	Protein of unknown function DUF1677, plant	PFAM	PF07911	DUF1677	coord: 28..117 e-value: 1.4E-39 score: 134.4
IPR012876	Protein of unknown function DUF1677, plant	PANTHER	PTHR33108	OS01G0745000 PROTEIN	coord: 16..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..148
None	No IPR available	PANTHER	PTHR33108:SF56	DUF1677 FAMILY PROTEIN	coord: 16..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037140.1	Lag0037140.1	mRNA