Lag0037100 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037100
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	glutaredoxin-C6-like
Location	chr2: 3393885 .. 3394292 (-)
RNA-Seq Expression	Lag0037100
Synteny	Lag0037100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGCCTACGCCGCTGCTCCAACGACCTCCTCCACCTCGACCTATCTCCACCGCCCGCCACCCCCTCCGCCGCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGAATCCGCCGCCTCATCTCCGAACACCCCGTCATCATCTTCAGCCGCACTTCCTGCTGCATGTGCCACGTCATGAAGAACCTCCTCGCCACCATCGGCGTCCACCCCACCGTTATCGAATTGGACGACCACGAGATCGACGCCCTCGCCTCCTGCTCCGCCACCGCCCCCGCCGCCGCCCCCTCCGTCTTCATCGGCGGCGCCTTCGTCGGCGGCCTCGAATCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTACCTAAGCTCGTCGAAGTCGGCGCTCTCTGGGTATGA

mRNA sequence

ATGCAAGGCCTACGCCGCTGCTCCAACGACCTCCTCCACCTCGACCTATCTCCACCGCCCGCCACCCCCTCCGCCGCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGAATCCGCCGCCTCATCTCCGAACACCCCGTCATCATCTTCAGCCGCACTTCCTGCTGCATGTGCCACGTCATGAAGAACCTCCTCGCCACCATCGGCGTCCACCCCACCGTTATCGAATTGGACGACCACGAGATCGACGCCCTCGCCTCCTGCTCCGCCACCGCCCCCGCCGCCGCCCCCTCCGTCTTCATCGGCGGCGCCTTCGTCGGCGGCCTCGAATCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTACCTAAGCTCGTCGAAGTCGGCGCTCTCTGGGTATGA

Coding sequence (CDS)

ATGCAAGGCCTACGCCGCTGCTCCAACGACCTCCTCCACCTCGACCTATCTCCACCGCCCGCCACCCCCTCCGCCGCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGAATCCGCCGCCTCATCTCCGAACACCCCGTCATCATCTTCAGCCGCACTTCCTGCTGCATGTGCCACGTCATGAAGAACCTCCTCGCCACCATCGGCGTCCACCCCACCGTTATCGAATTGGACGACCACGAGATCGACGCCCTCGCCTCCTGCTCCGCCACCGCCCCCGCCGCCGCCCCCTCCGTCTTCATCGGCGGCGCCTTCGTCGGCGGCCTCGAATCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTACCTAAGCTCGTCGAAGTCGGCGCTCTCTGGGTATGA

Protein sequence

MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGALWV

Homology

[Close]

BLAST of Lag0037100 vs. NCBI nr
Match: XP_038899998.1 (glutaredoxin-C6-like [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 7.1e-60
Identity = 126/137 (91.97%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MQGLRRCSNDLLHLDLS-PPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCM 60
           MQGLRRCSNDLLHLDLS PPP TPS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCM
Sbjct: 1   MQGLRRCSNDLLHLDLSPPPPTTPSPASLSIDVAESAETRIRRLISEHPVIIFSRTSCCM 60

Query: 61  CHVMKNLLATIGVHPTVIELDDHEIDALASCSA-TAPAAAPSVFIGGAFVGGLESLVALH 120
           CHVMK LLATIGVHPTVIELDD EIDAL+SCS+ T PAA P+VFIGGAFVGGLESLVALH
Sbjct: 61  CHVMKKLLATIGVHPTVIELDDDEIDALSSCSSTTVPAATPAVFIGGAFVGGLESLVALH 120

Query: 121 LSGHLVPKLVEVGALWV 136
           LSGHLVPKLVEVGALWV
Sbjct: 121 LSGHLVPKLVEVGALWV 137

[Close]

BLAST of Lag0037100 vs. NCBI nr
Match: KAG6608371.1 (Glutaredoxin-C6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 122/135 (90.37%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAAAP+VFIGG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAAAPAVFIGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

[Close]

BLAST of Lag0037100 vs. NCBI nr
Match: XP_022941086.1 (glutaredoxin-C6-like [Cucurbita moschata])

HSP 1 Score: 238.4 bits (607), Expect = 3.5e-59
Identity = 121/135 (89.63%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAAAP+VF+GG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAAAPAVFMGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

[Close]

BLAST of Lag0037100 vs. NCBI nr
Match: XP_023524422.1 (glutaredoxin-C6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 4.6e-59
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAA P+VFIGG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAATPAVFIGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

[Close]

BLAST of Lag0037100 vs. NCBI nr
Match: XP_022982422.1 (glutaredoxin-C6 [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.0e-58
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSID AESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDDAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAAAP+VFIGG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAAAPAVFIGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

[Close]

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q8L9S3 (Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-42
Identity = 95/140 (67.86%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 3   GLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHV 62
           GL+R SND++ LDL+PP  T S+ SLSID  ES E +IRRLISEHPVIIFSR+SCCMCHV
Sbjct: 6   GLQRFSNDVVRLDLTPPSQT-SSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHV 65

Query: 63  MKNLLATIGVHPTVIELDDHEIDALA-------SCSATAPAAAPSVFIGGAFVGGLESLV 122
           MK LLATIGV PTVIELDDHE+ +L        S   +     P+VFIG   VGGLESLV
Sbjct: 66  MKRLLATIGVIPTVIELDDHEVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLV 125

Query: 123 ALHLSGHLVPKLVEVGALWV 136
           ALHLSG LVPKLV+VGALWV
Sbjct: 126 ALHLSGQLVPKLVQVGALWV 144

[Close]

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q29PZ1 (Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-38
Identity = 91/150 (60.67%), Postives = 106/150 (70.67%), Query Frame = 0


Query: 1   MQGLRRCSNDLLHLDLS-----PPPATPSA----------ASLSIDVAESAETRIRRLIS 60
           M+GLR CSND + LDL+     PPP  P A           SLS D  E++E++I RLIS
Sbjct: 4   MRGLRNCSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLIS 63

Query: 61  EHPVIIFSR-TSCCMCHVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIG 120
           EHPVIIF+R +SCCMCHVMK LL+T+GVHPTVIE+DD EI  L      A  AAP +FIG
Sbjct: 64  EHPVIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDDGEIAYL------AVEAAPVLFIG 123

Query: 121 GAFVGGLESLVALHLSGHLVPKLVEVGALW 135
           G  VGG ESLVALHLSG L+P+LVEVGALW
Sbjct: 124 GTCVGGFESLVALHLSGQLIPRLVEVGALW 147

[Close]

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q0DK35 (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 34  ESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELDDHEIDALASCSAT 93
           E    RI RL+ E PV+IF+R  CCMCHVM+ LLA +G H TVIELD+   +A A  SA 
Sbjct: 39  EQPAERIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIELDEAAEEAAA--SAA 98

Query: 94  APAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGAL 134
           A AA P++F+GGA VGGL+ L+ LHLSG LVP+L EVGAL
Sbjct: 99  AAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136

[Close]

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q0JDM4 (Glutaredoxin-C5 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC5 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 6.8e-21
Identity = 54/121 (44.63%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 23  PSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELD-- 82
           P+AA +    AE+A  R+ RL SE  V++FS +SCCMCH +K L   +GVHP V ELD  
Sbjct: 15  PAAAMVVAAAAETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLD 74

Query: 83  ------DHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGALW 136
                 +  +  L      A AA P VFIGG  VG ++ ++A H++G LVP L E GALW
Sbjct: 75  PRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALW 134

[Close]

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q6K609 (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 26  ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELD----D 85
           A+    + ESA  R+ RL SE  V++FS +SCCMCH +K L   +GVHPTV ELD     
Sbjct: 15  AAAPAPMVESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRG 74

Query: 86  HEID-ALASC------SATAPAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGALW 136
            E++ ALA        +A +P   P VFIGG  VG ++ ++A H++G LVP L E GALW
Sbjct: 75  RELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALW 134

The following BLAST results are available for this feature:

BLAST of Lag0037100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899998.1	7.1e-60	91.97	glutaredoxin-C6-like [Benincasa hispida]	[more]
KAG6608371.1	1.6e-59	90.37	Glutaredoxin-C6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022941086.1	3.5e-59	89.63	glutaredoxin-C6-like [Cucurbita moschata]	[more]
XP_023524422.1	4.6e-59	89.63	glutaredoxin-C6 [Cucurbita pepo subsp. pepo]	[more]
XP_022982422.1	1.0e-58	89.63	glutaredoxin-C6 [Cucurbita maxima]	[more]

BLAST of Lag0037100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S3	5.3e-42	67.86	Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2	[more]
Q29PZ1	3.6e-38	60.67	Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1	[more]
Q0DK35	1.0e-24	60.00	Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1	[more]
Q0JDM4	6.8e-21	44.63	Glutaredoxin-C5 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC5 PE=2 SV=2	[more]
Q6K609	2.8e-19	45.45	Glutaredoxin-C3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC3 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 105..118 score: 31.55 coord: 49..67 score: 35.09 coord: 91..104 score: 30.36
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 49..108 e-value: 9.5E-9 score: 35.4
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 40..135 e-value: 2.2E-35 score: 118.6
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 6..134
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 30..134 e-value: 9.6E-26 score: 91.6
None	No IPR available	PANTHER	PTHR10168:SF56	GLUTAREDOXIN-C6	coord: 6..134
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 37..134 score: 20.233185
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 36..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037100.1	Lag0037100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0097573	glutathione oxidoreductase activity