Lag0037100 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037100
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglutaredoxin-C6-like
Locationchr2: 3393885 .. 3394292 (-)
RNA-Seq ExpressionLag0037100
SyntenyLag0037100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGCCTACGCCGCTGCTCCAACGACCTCCTCCACCTCGACCTATCTCCACCGCCCGCCACCCCCTCCGCCGCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGAATCCGCCGCCTCATCTCCGAACACCCCGTCATCATCTTCAGCCGCACTTCCTGCTGCATGTGCCACGTCATGAAGAACCTCCTCGCCACCATCGGCGTCCACCCCACCGTTATCGAATTGGACGACCACGAGATCGACGCCCTCGCCTCCTGCTCCGCCACCGCCCCCGCCGCCGCCCCCTCCGTCTTCATCGGCGGCGCCTTCGTCGGCGGCCTCGAATCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTACCTAAGCTCGTCGAAGTCGGCGCTCTCTGGGTATGA

mRNA sequence

ATGCAAGGCCTACGCCGCTGCTCCAACGACCTCCTCCACCTCGACCTATCTCCACCGCCCGCCACCCCCTCCGCCGCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGAATCCGCCGCCTCATCTCCGAACACCCCGTCATCATCTTCAGCCGCACTTCCTGCTGCATGTGCCACGTCATGAAGAACCTCCTCGCCACCATCGGCGTCCACCCCACCGTTATCGAATTGGACGACCACGAGATCGACGCCCTCGCCTCCTGCTCCGCCACCGCCCCCGCCGCCGCCCCCTCCGTCTTCATCGGCGGCGCCTTCGTCGGCGGCCTCGAATCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTACCTAAGCTCGTCGAAGTCGGCGCTCTCTGGGTATGA

Coding sequence (CDS)

ATGCAAGGCCTACGCCGCTGCTCCAACGACCTCCTCCACCTCGACCTATCTCCACCGCCCGCCACCCCCTCCGCCGCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGAATCCGCCGCCTCATCTCCGAACACCCCGTCATCATCTTCAGCCGCACTTCCTGCTGCATGTGCCACGTCATGAAGAACCTCCTCGCCACCATCGGCGTCCACCCCACCGTTATCGAATTGGACGACCACGAGATCGACGCCCTCGCCTCCTGCTCCGCCACCGCCCCCGCCGCCGCCCCCTCCGTCTTCATCGGCGGCGCCTTCGTCGGCGGCCTCGAATCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTACCTAAGCTCGTCGAAGTCGGCGCTCTCTGGGTATGA

Protein sequence

MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGALWV
Homology
BLAST of Lag0037100 vs. NCBI nr
Match: XP_038899998.1 (glutaredoxin-C6-like [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 7.1e-60
Identity = 126/137 (91.97%), Postives = 129/137 (94.16%), Query Frame = 0

Query: 1   MQGLRRCSNDLLHLDLS-PPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCM 60
           MQGLRRCSNDLLHLDLS PPP TPS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCM
Sbjct: 1   MQGLRRCSNDLLHLDLSPPPPTTPSPASLSIDVAESAETRIRRLISEHPVIIFSRTSCCM 60

Query: 61  CHVMKNLLATIGVHPTVIELDDHEIDALASCSA-TAPAAAPSVFIGGAFVGGLESLVALH 120
           CHVMK LLATIGVHPTVIELDD EIDAL+SCS+ T PAA P+VFIGGAFVGGLESLVALH
Sbjct: 61  CHVMKKLLATIGVHPTVIELDDDEIDALSSCSSTTVPAATPAVFIGGAFVGGLESLVALH 120

Query: 121 LSGHLVPKLVEVGALWV 136
           LSGHLVPKLVEVGALWV
Sbjct: 121 LSGHLVPKLVEVGALWV 137

BLAST of Lag0037100 vs. NCBI nr
Match: KAG6608371.1 (Glutaredoxin-C6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 122/135 (90.37%), Postives = 128/135 (94.81%), Query Frame = 0

Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAAAP+VFIGG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAAAPAVFIGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

BLAST of Lag0037100 vs. NCBI nr
Match: XP_022941086.1 (glutaredoxin-C6-like [Cucurbita moschata])

HSP 1 Score: 238.4 bits (607), Expect = 3.5e-59
Identity = 121/135 (89.63%), Postives = 128/135 (94.81%), Query Frame = 0

Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAAAP+VF+GG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAAAPAVFMGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

BLAST of Lag0037100 vs. NCBI nr
Match: XP_023524422.1 (glutaredoxin-C6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 4.6e-59
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0

Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAA P+VFIGG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAATPAVFIGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

BLAST of Lag0037100 vs. NCBI nr
Match: XP_022982422.1 (glutaredoxin-C6 [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.0e-58
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0

Query: 1   MQGLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMC 60
           MQGLRRCSNDLL LDLSPP + PS ASLSID AESAETRIRRLISEHPVIIFSRTSCCMC
Sbjct: 1   MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDDAESAETRIRRLISEHPVIIFSRTSCCMC 60

Query: 61  HVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLS 120
           HVMK LLA+IGVHPTVIELDDHEIDALAS S+T PAAAP+VFIGG++VGGLESLVALHLS
Sbjct: 61  HVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAAAPAVFIGGSYVGGLESLVALHLS 120

Query: 121 GHLVPKLVEVGALWV 136
           GHLVPKLVEVGALWV
Sbjct: 121 GHLVPKLVEVGALWV 135

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q8L9S3 (Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-42
Identity = 95/140 (67.86%), Postives = 107/140 (76.43%), Query Frame = 0

Query: 3   GLRRCSNDLLHLDLSPPPATPSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHV 62
           GL+R SND++ LDL+PP  T S+ SLSID  ES E +IRRLISEHPVIIFSR+SCCMCHV
Sbjct: 6   GLQRFSNDVVRLDLTPPSQT-SSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHV 65

Query: 63  MKNLLATIGVHPTVIELDDHEIDALA-------SCSATAPAAAPSVFIGGAFVGGLESLV 122
           MK LLATIGV PTVIELDDHE+ +L        S   +     P+VFIG   VGGLESLV
Sbjct: 66  MKRLLATIGVIPTVIELDDHEVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLV 125

Query: 123 ALHLSGHLVPKLVEVGALWV 136
           ALHLSG LVPKLV+VGALWV
Sbjct: 126 ALHLSGQLVPKLVQVGALWV 144

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q29PZ1 (Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-38
Identity = 91/150 (60.67%), Postives = 106/150 (70.67%), Query Frame = 0

Query: 1   MQGLRRCSNDLLHLDLS-----PPPATPSA----------ASLSIDVAESAETRIRRLIS 60
           M+GLR CSND + LDL+     PPP  P A           SLS D  E++E++I RLIS
Sbjct: 4   MRGLRNCSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLIS 63

Query: 61  EHPVIIFSR-TSCCMCHVMKNLLATIGVHPTVIELDDHEIDALASCSATAPAAAPSVFIG 120
           EHPVIIF+R +SCCMCHVMK LL+T+GVHPTVIE+DD EI  L      A  AAP +FIG
Sbjct: 64  EHPVIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDDGEIAYL------AVEAAPVLFIG 123

Query: 121 GAFVGGLESLVALHLSGHLVPKLVEVGALW 135
           G  VGG ESLVALHLSG L+P+LVEVGALW
Sbjct: 124 GTCVGGFESLVALHLSGQLIPRLVEVGALW 147

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q0DK35 (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query: 34  ESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELDDHEIDALASCSAT 93
           E    RI RL+ E PV+IF+R  CCMCHVM+ LLA +G H TVIELD+   +A A  SA 
Sbjct: 39  EQPAERIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIELDEAAEEAAA--SAA 98

Query: 94  APAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGAL 134
           A AA P++F+GGA VGGL+ L+ LHLSG LVP+L EVGAL
Sbjct: 99  AAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q0JDM4 (Glutaredoxin-C5 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC5 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 6.8e-21
Identity = 54/121 (44.63%), Postives = 72/121 (59.50%), Query Frame = 0

Query: 23  PSAASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELD-- 82
           P+AA +    AE+A  R+ RL SE  V++FS +SCCMCH +K L   +GVHP V ELD  
Sbjct: 15  PAAAMVVAAAAETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLD 74

Query: 83  ------DHEIDALASCSATAPAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGALW 136
                 +  +  L      A AA P VFIGG  VG ++ ++A H++G LVP L E GALW
Sbjct: 75  PRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALW 134

BLAST of Lag0037100 vs. ExPASy Swiss-Prot
Match: Q6K609 (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 0

Query: 26  ASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHVMKNLLATIGVHPTVIELD----D 85
           A+    + ESA  R+ RL SE  V++FS +SCCMCH +K L   +GVHPTV ELD     
Sbjct: 15  AAAPAPMVESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRG 74

Query: 86  HEID-ALASC------SATAPAAAPSVFIGGAFVGGLESLVALHLSGHLVPKLVEVGALW 136
            E++ ALA        +A +P   P VFIGG  VG ++ ++A H++G LVP L E GALW
Sbjct: 75  RELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALW 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899998.17.1e-6091.97glutaredoxin-C6-like [Benincasa hispida][more]
KAG6608371.11.6e-5990.37Glutaredoxin-C6, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022941086.13.5e-5989.63glutaredoxin-C6-like [Cucurbita moschata][more]
XP_023524422.14.6e-5989.63glutaredoxin-C6 [Cucurbita pepo subsp. pepo][more]
XP_022982422.11.0e-5889.63glutaredoxin-C6 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q8L9S35.3e-4267.86Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2[more]
Q29PZ13.6e-3860.67Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1[more]
Q0DK351.0e-2460.00Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1[more]
Q0JDM46.8e-2144.63Glutaredoxin-C5 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC5 PE=2 SV=2[more]
Q6K6092.8e-1945.45Glutaredoxin-C3 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC3 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014025Glutaredoxin subgroupPRINTSPR00160GLUTAREDOXINcoord: 105..118
score: 31.55
coord: 49..67
score: 35.09
coord: 91..104
score: 30.36
IPR002109GlutaredoxinPFAMPF00462Glutaredoxincoord: 49..108
e-value: 9.5E-9
score: 35.4
IPR011905Glutaredoxin-like, plant IITIGRFAMTIGR02189TIGR02189coord: 40..135
e-value: 2.2E-35
score: 118.6
IPR011905Glutaredoxin-like, plant IIPANTHERPTHR10168GLUTAREDOXINcoord: 6..134
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 30..134
e-value: 9.6E-26
score: 91.6
NoneNo IPR availablePANTHERPTHR10168:SF56GLUTAREDOXIN-C6coord: 6..134
NoneNo IPR availablePROSITEPS51354GLUTAREDOXIN_2coord: 37..134
score: 20.233185
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 36..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037100.1Lag0037100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0097573 glutathione oxidoreductase activity