Lag0037073 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037073
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr2: 3202899 .. 3203522 (+)
RNA-Seq Expression	Lag0037073
Synteny	Lag0037073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAACTAGCATATTCAATATTTCACCTCGTACTATGGGAAAGCACATGTCATGTCAAGCCTAGTACGTTTATCTCACCTTACATTAAGGTATGGATGACCCCAATTGGTCCTATGGCTTTATCTTGTGTTTTTGCATTGATATGCATACATTATGTACACAAAAAACAAACTCACATCTTCGGACGCTTCTTGGAACGCAAGGAGAACAAGGGAGGCATGGGTTGGACCCTGCGTGACTTCAGCGGGTCTCTCATCTGTGCAGGATCGAAAGTGGTTAAGGAGCAATGGACGATTAATATCCTTGAAGCAAAGGCGATGTGGGAAGGTTTGCATTTCACCCTTTCTCTACCTGATAAACCTCCGATGATTGAGGTTGAATCTGATTGCCTAGAGCTCGTCTCCAATGTGATCGATGAAGATGCTACCCTATCTGAACTGAAGGTGTGCGCAGAAGCCATTCGTGTTTTGGATAAAGATCAGGGCGTGCTTCAATTCAAGCACTGTCCTCGATCGCAGAACCACGCGGAAAATGTCATTGCTAGAGCAAGTGTTGGCTTGATCCGTCGTCGGGAGTTTTTTTGTTTTCGTTCAGGGGTCTCCTTCTGTACTAGAAGGTAG

mRNA sequence

ATGTTAAAACTAGCATATTCAATATTTCACCTCGTACTATGGGAAAGCACATGTCATGTCAAGCCTAGTACGTTTATCTCACCTTACATTAAGGTATGGATGACCCCAATTGGTCCTATGGCTTTATCTTGTGTTTTTGCATTGATATGCATACATTATGTACACAAAAAACAAACTCACATCTTCGGACGCTTCTTGGAACGCAAGGAGAACAAGGGAGGCATGGGTTGGACCCTGCGTGACTTCAGCGGGTCTCTCATCTGTGCAGGATCGAAAGTGGTTAAGGAGCAATGGACGATTAATATCCTTGAAGCAAAGGCGATGTGGGAAGGTTTGCATTTCACCCTTTCTCTACCTGATAAACCTCCGATGATTGAGGTTGAATCTGATTGCCTAGAGCTCGTCTCCAATGTGATCGATGAAGATGCTACCCTATCTGAACTGAAGGTGTGCGCAGAAGCCATTCGTGTTTTGGATAAAGATCAGGGCGTGCTTCAATTCAAGCACTGTCCTCGATCGCAGAACCACGCGGAAAATGTCATTGCTAGAGCAAGTGTTGGCTTGATCCGTCGTCGGGAGTTTTTTTGTTTTCGTTCAGGGGTCTCCTTCTGTACTAGAAGGTAG

Coding sequence (CDS)

ATGTTAAAACTAGCATATTCAATATTTCACCTCGTACTATGGGAAAGCACATGTCATGTCAAGCCTAGTACGTTTATCTCACCTTACATTAAGGTATGGATGACCCCAATTGGTCCTATGGCTTTATCTTGTGTTTTTGCATTGATATGCATACATTATGTACACAAAAAACAAACTCACATCTTCGGACGCTTCTTGGAACGCAAGGAGAACAAGGGAGGCATGGGTTGGACCCTGCGTGACTTCAGCGGGTCTCTCATCTGTGCAGGATCGAAAGTGGTTAAGGAGCAATGGACGATTAATATCCTTGAAGCAAAGGCGATGTGGGAAGGTTTGCATTTCACCCTTTCTCTACCTGATAAACCTCCGATGATTGAGGTTGAATCTGATTGCCTAGAGCTCGTCTCCAATGTGATCGATGAAGATGCTACCCTATCTGAACTGAAGGTGTGCGCAGAAGCCATTCGTGTTTTGGATAAAGATCAGGGCGTGCTTCAATTCAAGCACTGTCCTCGATCGCAGAACCACGCGGAAAATGTCATTGCTAGAGCAAGTGTTGGCTTGATCCGTCGTCGGGAGTTTTTTTGTTTTCGTTCAGGGGTCTCCTTCTGTACTAGAAGGTAG

Protein sequence

MLKLAYSIFHLVLWESTCHVKPSTFISPYIKVWMTPIGPMALSCVFALICIHYVHKKQTHIFGRFLERKENKGGMGWTLRDFSGSLICAGSKVVKEQWTINILEAKAMWEGLHFTLSLPDKPPMIEVESDCLELVSNVIDEDATLSELKVCAEAIRVLDKDQGVLQFKHCPRSQNHAENVIARASVGLIRRREFFCFRSGVSFCTRR

Homology

[Close]

BLAST of Lag0037073 vs. NCBI nr
Match: XP_018852850.1 (uncharacterized protein LOC109014810 [Juglans regia] >KAF5481541.1 hypothetical protein F2P56_002182 [Juglans regia])

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-06
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 70  ENKGGMGWTLRDFSGSLICAGSKVVKEQWTINILEAKAMWEGLHFTLSLPDKPPMIEVES 129
           +NK G+G  LRD  G L  A S+  +E   + I+EA A+  GL F L++  +   +E+ES
Sbjct: 370 QNKTGIGAILRDSHGFLFMALSRGEEEFIELEIVEATAVLRGLQFYLNIGIQ--NLEIES 429

Query: 130 DCLELVSNVIDEDATLSELKVCAEAIRVLDKDQGVLQFKHCPRSQNHAENVIAR 184
           DC  LV  V +E  +   ++     IR L K  G  +F+HC R  N  E+ +A+
Sbjct: 430 DCQYLVEEVNNETISYIAMRKIIIEIRRLMKSFGDCKFQHCGRLSNATEHHLAQ 481

[Close]

BLAST of Lag0037073 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-05
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 74  GMGWTLRDFSGSLICAGSKVVKEQWTINILEAKAMWEGLHFTLSLPDKPPMIEVESDCLE 133
           G+GW   D    +  AG K V     +NILEA A+  GL    S+      I VESDCLE
Sbjct: 93  GLGWVFLDHLYRVCMAGLKFVLRCQKVNILEAIAICFGLEILSSIDIS--NIMVESDCLE 152

Query: 134 LVSNVIDEDAT-LSELKVCAEAIRVLDKDQGVLQFKHCPRSQN 176
            V N++++D   LSE+  C+E  +    + GV+ F H  R +N
Sbjct: 153 EVINLLNDDVVDLSEVSFCSEEAKDRGGNLGVISFSHVRRYRN 193

[Close]

BLAST of Lag0037073 vs. NCBI nr
Match: XP_042985441.1 (uncharacterized protein LOC122314103 [Carya illinoinensis])

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-05
Identity = 38/114 (33.33%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 70  ENKGGMGWTLRDFSGSLICAGSKVVKEQWTINILEAKAMWEGLHFTLSLPDKPPMIEVES 129
           + K G+G  LRD  G ++ A SK+ KE  +   +EA AM  GLHF          + +ES
Sbjct: 48  QQKAGVGVILRDDKGEVLVACSKLEKEMISSEFIEATAMLRGLHFCAQW--GVSKLILES 107

Query: 130 DCLELVSNVIDEDATLSELKVCAEAIRVLDKDQGVLQFKHCPRSQNHAENVIAR 184
           DCL LV++++ E    +EL V  + IR +      ++  H  R  N A + +A+
Sbjct: 108 DCLVLVNDLLSESENFTELGVLMQDIRRMLNGFQEVKVSHVNRLGNEAVHRLAK 159

[Close]

BLAST of Lag0037073 vs. NCBI nr
Match: CAA7018987.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 55.1 bits (131), Expect = 8.5e-04
Identity = 40/136 (29.41%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 57  KQTHIFGRFLE---RKENKGGMGWTLRDFSGSLICAGSKVVKEQWTINILEAKAMWEGLH 116
           KQ H+F   +    +K   GGMGW L D +GS +  G    +   +  + EA A+   L+
Sbjct: 26  KQNHLFDHLVGSWCKKTKTGGMGWILLDGAGSEVSRGHATERRITSALMAEALAIRSALN 85

Query: 117 FTLSLPDKPPMIEVESDCLELVSNVIDEDATLSELKVCAEAIRVLDKDQGVLQFKHCPRS 176
             L L      +++ SD L+L+  VI     L E+      I  L      + F + PRS
Sbjct: 86  HALELGITD--LQINSDALDLI-RVISTQEQLKEIYEILFDIHALASMFSSISFSYIPRS 145

Query: 177 QNHAENVIARASVGLI 190
           +N   + IA+++  LI
Sbjct: 146 ENKIADEIAKSANRLI 158

[Close]

BLAST of Lag0037073 vs. ExPASy TrEMBL
Match: A0A2I4H9M5 (uncharacterized protein LOC109014810 OS=Juglans regia OX=51240 GN=LOC109014810 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 70  ENKGGMGWTLRDFSGSLICAGSKVVKEQWTINILEAKAMWEGLHFTLSLPDKPPMIEVES 129
           +NK G+G  LRD  G L  A S+  +E   + I+EA A+  GL F L++  +   +E+ES
Sbjct: 370 QNKTGIGAILRDSHGFLFMALSRGEEEFIELEIVEATAVLRGLQFYLNIGIQ--NLEIES 429

Query: 130 DCLELVSNVIDEDATLSELKVCAEAIRVLDKDQGVLQFKHCPRSQNHAENVIAR 184
           DC  LV  V +E  +   ++     IR L K  G  +F+HC R  N  E+ +A+
Sbjct: 430 DCQYLVEEVNNETISYIAMRKIIIEIRRLMKSFGDCKFQHCGRLSNATEHHLAQ 481

[Close]

BLAST of Lag0037073 vs. ExPASy TrEMBL
Match: A0A6D2I187 (RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS6222 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 40/136 (29.41%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 57  KQTHIFGRFLE---RKENKGGMGWTLRDFSGSLICAGSKVVKEQWTINILEAKAMWEGLH 116
           KQ H+F   +    +K   GGMGW L D +GS +  G    +   +  + EA A+   L+
Sbjct: 26  KQNHLFDHLVGSWCKKTKTGGMGWILLDGAGSEVSRGHATERRITSALMAEALAIRSALN 85

Query: 117 FTLSLPDKPPMIEVESDCLELVSNVIDEDATLSELKVCAEAIRVLDKDQGVLQFKHCPRS 176
             L L      +++ SD L+L+  VI     L E+      I  L      + F + PRS
Sbjct: 86  HALELGITD--LQINSDALDLI-RVISTQEQLKEIYEILFDIHALASMFSSISFSYIPRS 145

Query: 177 QNHAENVIARASVGLI 190
           +N   + IA+++  LI
Sbjct: 146 ENKIADEIAKSANRLI 158

The following BLAST results are available for this feature:

BLAST of Lag0037073 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018852850.1	5.3e-06	35.96	uncharacterized protein LOC109014810 [Juglans regia] >KAF5481541.1 hypothetical ...	[more]
XP_038886170.1	2.0e-05	37.86	uncharacterized protein LOC120076417 [Benincasa hispida]	[more]
XP_042985441.1	4.5e-05	33.33	uncharacterized protein LOC122314103 [Carya illinoinensis]	[more]
CAA7018987.1	8.5e-04	29.41	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of Lag0037073 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0037073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I4H9M5	2.6e-06	35.96	uncharacterized protein LOC109014810 OS=Juglans regia OX=51240 GN=LOC109014810 P...	[more]
A0A6D2I187	4.1e-04	29.41	RNase H domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_L...	[more]

BLAST of Lag0037073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 64..187 e-value: 4.1E-7 score: 32.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 68..179 e-value: 1.4E-14 score: 54.0
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 72..175 e-value: 2.23673E-13 score: 62.3316
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 71..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037073.1	Lag0037073.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity