Lag0037059 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037059
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 3080678 .. 3081046 (-)
RNA-Seq ExpressionLag0037059
SyntenyLag0037059
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTGCAACAGCAGAACCCATTCACGAGGCAGAGTTGCTTTCTCGTGGGAGAACAAGCCAGGCGTGTGCAAAGCACCGCCACCGCCGCCGCACCTGATGCACAAGCAGCTCCGCCCGCCGCCGTGTACTTCGGCCAGAAAAGCCAACAGGAAGGCGCAGAAAGATGGGGGCGTTGAAGACCCGTTTCTTGCTGCGTACAGAGAGTGCACCAGTGGAGACGACGAGATGAATTGCAAGCTGAAGAAGAATAAAAATGGGTTTGGAGGACCGTGGAGGAACGTGTTTGGAAAATTGTCTTGCAAGCATCTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGGACAGTGTAG

mRNA sequence

ATGGCCTGCAACAGCAGAACCCATTCACGAGGCAGAGTTGCTTTCTCGTGGGAGAACAAGCCAGGCGTGTGCAAAGCACCGCCACCGCCGCCGCACCTGATGCACAAGCAGCTCCGCCCGCCGCCGTGTACTTCGGCCAGAAAAGCCAACAGGAAGGCGCAGAAAGATGGGGGCGTTGAAGACCCGTTTCTTGCTGCGTACAGAGAGTGCACCAGTGGAGACGACGAGATGAATTGCAAGCTGAAGAAGAATAAAAATGGGTTTGGAGGACCGTGGAGGAACGTGTTTGGAAAATTGTCTTGCAAGCATCTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGGACAGTGTAG

Coding sequence (CDS)

ATGGCCTGCAACAGCAGAACCCATTCACGAGGCAGAGTTGCTTTCTCGTGGGAGAACAAGCCAGGCGTGTGCAAAGCACCGCCACCGCCGCCGCACCTGATGCACAAGCAGCTCCGCCCGCCGCCGTGTACTTCGGCCAGAAAAGCCAACAGGAAGGCGCAGAAAGATGGGGGCGTTGAAGACCCGTTTCTTGCTGCGTACAGAGAGTGCACCAGTGGAGACGACGAGATGAATTGCAAGCTGAAGAAGAATAAAAATGGGTTTGGAGGACCGTGGAGGAACGTGTTTGGAAAATTGTCTTGCAAGCATCTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGGACAGTGTAG

Protein sequence

MACNSRTHSRGRVAFSWENKPGVCKAPPPPPHLMHKQLRPPPCTSARKANRKAQKDGGVEDPFLAAYRECTSGDDEMNCKLKKNKNGFGGPWRNVFGKLSCKHLTAVRDDSLISSPVSKRTV
Homology
BLAST of Lag0037059 vs. NCBI nr
Match: KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 97/134 (72.39%), Postives = 105/134 (78.36%), Query Frame = 0

Query: 1   MACNSRTHSRGRVAFSWENKPGVCKAPPPPPHL---------MHKQLRPPPCTSARKANR 60
           MACN++THSRGRVAFSWEN+PGVCKA   PP+          + K+L+PPPCT ARK N+
Sbjct: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61  K-AQKDGGVEDPFLAAYRECTSGDDEMNCKLKKNKNGFGGPW--RNVFGKLSCKHLTAVR 120
           K  QKDGG EDPFLAAYRECTS DDE NCKLKKNK GFGG W   N FG LSCK LTAVR
Sbjct: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG-WMTMNFFGNLSCKQLTAVR 120

Query: 121 DDSLISSPVSKRTV 123
           DDSLISSPVSKRTV
Sbjct: 121 DDSLISSPVSKRTV 133

BLAST of Lag0037059 vs. NCBI nr
Match: KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 1  MACNSRTHSRGRVAFSWENKPGVCKAPPPPP-------HLMHKQLRPPPCTSARKANRKA 60
          M C++R HSRGRVAFSWENKPG CKA   PP        L  K+LRPPPCTSARK  +K 
Sbjct: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61 QKDGGVEDPFLAAYRECTSGDDEMNCKLKKNKNGF 89
          QKDG  EDPFLAA+REC++G+DE NCKLK+NK GF
Sbjct: 61 QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

BLAST of Lag0037059 vs. NCBI nr
Match: KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 1  MACNSRTHSRGRVAFSWENKPGVCKAPPPPP-------HLMHKQLRPPPCTSARKANRKA 60
          M C++R HSRGRVAFSWENKPG CKA   PP        L  K+LRPPPCTSARK  +K 
Sbjct: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61 QKDGGVEDPFLAAYRECTSGDDEMNCKLKKNKNGF 89
          QKDG  EDPFLAA+REC++G+DE NCKLK+NK GF
Sbjct: 61 QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

BLAST of Lag0037059 vs. NCBI nr
Match: KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-27
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MACNSRTHSRGRVAFSWENKPGVCKAPPPPPH-------LMHKQLRPPPCTSARKANRKA 60
          MACN++THSRGRVAFSWENKPGVCKA   PPH        + KQL+PPPCT ARK N+K 
Sbjct: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61 QKDGGVEDPFLAAYRECTSGDDEMNCKL 82
          QKDGG EDPFLAAY+ECTS DDE  C L
Sbjct: 61 QKDGGAEDPFLAAYKECTSEDDEKTCPL 88

BLAST of Lag0037059 vs. NCBI nr
Match: CBI19366.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-12
Identity = 53/138 (38.41%), Postives = 67/138 (48.55%), Query Frame = 0

Query: 5   SRTHSRGRVAFSWENKPGVCKA------------------PPPP-------PHLMHKQLR 64
           S+ HS+G V F+WENKPGVCKA                   PPP       P +   Q+ 
Sbjct: 4   SKIHSQGNVPFAWENKPGVCKARRDDEDCPTDTGHFVIKLQPPPCPLEKGRPSVHGSQIP 63

Query: 65  PPPCTSARKANRKAQKDGGV---EDPFLAAYRECTSGDDEMNCKLKKNKNGFGGPWRNVF 115
            PPCT     +R + K G +   EDPFLAAY+ECT          +K  +G     R+  
Sbjct: 64  LPPCTFQGPPSRNSSKKGHLRKQEDPFLAAYKECTK-------NTRKGHDGKTHLGRSSM 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0064468.11.1e-4372.39hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201... [more]
KAG6591440.12.5e-2766.32Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7024319.12.5e-2766.32hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8649893.15.5e-2770.45hypothetical protein Csa_012691 [Cucumis sativus][more]
CBI19366.38.5e-1238.41unnamed protein product, partial [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..37
NoneNo IPR availablePANTHERPTHR33696:SF15SUBFAMILY NOT NAMEDcoord: 5..115
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 5..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037059.1Lag0037059.1mRNA