Lag0037054 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037054
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Mixed-linked glucan synthase
Location	chr2: 3042918 .. 3043256 (+)
RNA-Seq Expression	Lag0037054
Synteny	Lag0037054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCCATGGAGCCGAGAGTGAGAGCTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTAGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTTCCACGGCTGAGGACGATGGCGATGAGGCGAACGACGCCCCCTTGATCCCGAACGATGGAAATCTTCGACAGGACGGGGTTGCTGCTGGCCGGAGGAGGGCCAGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCTATCTGA

mRNA sequence

ATGGCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCCATGGAGCCGAGAGTGAGAGCTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTAGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTTCCACGGCTGAGGACGATGGCGATGAGGCGAACGACGCCCCCTTGATCCCGAACGATGGAAATCTTCGACAGGACGGGGTTGCTGCTGGCCGGAGGAGGGCCAGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCTATCTGA

Coding sequence (CDS)

ATGGCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCCATGGAGCCGAGAGTGAGAGCTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTAGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTTCCACGGCTGAGGACGATGGCGATGAGGCGAACGACGCCCCCTTGATCCCGAACGATGGAAATCTTCGACAGGACGGGGTTGCTGCTGGCCGGAGGAGGGCCAGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCTATCTGA

Protein sequence

MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERCSCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI

Homology

[Close]

BLAST of Lag0037054 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVR SSPSH SPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI 113
           SCIRI+TAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

[Close]

BLAST of Lag0037054 vs. NCBI nr
Match: KAG6591437.1 (hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.3 bits (534), Expect = 8.6e-51
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVR SSP+H SPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 63  MAAITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 122

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI 113
           SCIRI+TAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 123 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGTAAGRRRTVKGKKCQPLVDAI 174

[Close]

BLAST of Lag0037054 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MA+ITSTCSSFFSIRS+SMEPRVR SSP+H SPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MASITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI 113
           SCIRI+TAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 61  SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 112

[Close]

BLAST of Lag0037054 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 7.5e-47
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVR SSPSHGSP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKK 105
           SCIRI+TAEDDGDE ND PLIPNDGNLRQDG AAGRRRA KGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

[Close]

BLAST of Lag0037054 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPR+R SS SHGSPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 27  MAAITSTCSSFFSIRSNSMEPRLRTSSSSHGSPACGKLDGVATWLINGFVTAFFGSLERC 86

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKK 105
           SCIRI+TAEDDGDEAND PLIPNDGNLRQDG AAGRRRA KGKK
Sbjct: 87  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGTAAGRRRAGKGKK 130

The following BLAST results are available for this feature:

BLAST of Lag0037054 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977101.1	3.8e-51	92.86	uncharacterized protein LOC111477268 [Cucurbita maxima]	[more]
KAG6591437.1	8.6e-51	91.96	hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024315.1	1.9e-50	91.07	hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0064464.1	7.5e-47	93.27	hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK201...	[more]
XP_038897734.1	1.7e-46	93.27	uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida]	[more]

BLAST of Lag0037054 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34061:SF2	PROTEIN, PUTATIVE-RELATED	coord: 4..104
None	No IPR available	PANTHER	PTHR34061	PROTEIN, PUTATIVE-RELATED	coord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037054.1	Lag0037054.1	mRNA