Lag0037054 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037054
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMixed-linked glucan synthase
Locationchr2: 3042918 .. 3043256 (+)
RNA-Seq ExpressionLag0037054
SyntenyLag0037054
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCCATGGAGCCGAGAGTGAGAGCTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTAGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTTCCACGGCTGAGGACGATGGCGATGAGGCGAACGACGCCCCCTTGATCCCGAACGATGGAAATCTTCGACAGGACGGGGTTGCTGCTGGCCGGAGGAGGGCCAGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCTATCTGA

mRNA sequence

ATGGCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCCATGGAGCCGAGAGTGAGAGCTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTAGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTTCCACGGCTGAGGACGATGGCGATGAGGCGAACGACGCCCCCTTGATCCCGAACGATGGAAATCTTCGACAGGACGGGGTTGCTGCTGGCCGGAGGAGGGCCAGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCTATCTGA

Coding sequence (CDS)

ATGGCTGCCATTACTTCCACCTGCAGTAGCTTCTTCTCCATCAGATCAAATTCCATGGAGCCGAGAGTGAGAGCTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTAGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTTCCACGGCTGAGGACGATGGCGATGAGGCGAACGACGCCCCCTTGATCCCGAACGATGGAAATCTTCGACAGGACGGGGTTGCTGCTGGCCGGAGGAGGGCCAGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCTATCTGA

Protein sequence

MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERCSCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI
Homology
[Close]
BLAST of Lag0037054 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVR SSPSH SPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI 113
           SCIRI+TAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

[Close]
BLAST of Lag0037054 vs. NCBI nr
Match: KAG6591437.1 (hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.3 bits (534), Expect = 8.6e-51
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVR SSP+H SPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 63  MAAITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 122

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI 113
           SCIRI+TAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 123 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGTAAGRRRTVKGKKCQPLVDAI 174

[Close]
BLAST of Lag0037054 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MA+ITSTCSSFFSIRS+SMEPRVR SSP+H SPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MASITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKKCQPLVDAI 113
           SCIRI+TAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 61  SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 112

[Close]
BLAST of Lag0037054 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 7.5e-47
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVR SSPSHGSP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKK 105
           SCIRI+TAEDDGDE ND PLIPNDGNLRQDG AAGRRRA KGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

[Close]
BLAST of Lag0037054 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0 

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRASSPSHGSPACGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPR+R SS SHGSPACGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 27  MAAITSTCSSFFSIRSNSMEPRLRTSSSSHGSPACGKLDGVATWLINGFVTAFFGSLERC 86

Query: 61  SCIRISTAEDDGDEANDAPLIPNDGNLRQDGVAAGRRRARKGKK 105
           SCIRI+TAEDDGDEAND PLIPNDGNLRQDG AAGRRRA KGKK
Sbjct: 87  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGTAAGRRRAGKGKK 130

The following BLAST results are available for this feature:
BLAST of Lag0037054 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022977101.13.8e-5192.86uncharacterized protein LOC111477268 [Cucurbita maxima][more]
KAG6591437.18.6e-5191.96hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024315.11.9e-5091.07hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0064464.17.5e-4793.27hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK201... [more]
XP_038897734.11.7e-4693.27uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida][more]
BLAST of Lag0037054 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34061:SF2PROTEIN, PUTATIVE-RELATEDcoord: 4..104
NoneNo IPR availablePANTHERPTHR34061PROTEIN, PUTATIVE-RELATEDcoord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037054.1Lag0037054.1mRNA