Lag0037014 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037014
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc-binding protein
Locationchr2: 2791471 .. 2792359 (+)
RNA-Seq ExpressionLag0037014
SyntenyLag0037014
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGAGGCAATGGCCAGAAGTCTAGAATGGCTCGGGAGAGAAACCTGGAGAAACAAAAATCCGCAAGAGGTAATTAACCTGCCACCTAATTCTTTCTGTTTGGTTTCTGAGAAAATGATTTGCTGAGCCCATGCGATTGCTCTTGATTCCTCTTTCTGTACTCCTTGTCCTTCAGCCTTTAGCTTGAGTAATGGAAAGTATAGTTGGAAGGCCAATATTAGAAAACTCTATGCATAAATGACCACATCGACCAAATCTAGCTGCTTGCTAATTTAGTTATCAAGTATAATAACTGAAAAGACTATTACTGTAATCGTCATTGTTTTTCTTTTTTCTTTGTGAGTTTTTCGTGCGGTGGGAGGAAGATGATGATTTCCCTGTATAAAGATTAGAGTTAATTATGATCATAATAATTTCCACAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACCATACAGGTAAAAATCCGAGTCTTATGTACCTAATTTCTTTTGTATTGTTCGTAACTTGAAAGATTCAACCATACTATGAGCTGAAATTAAGCTCCCACGGGAGAGAATCTTTTGTAATTCTACTCGAGAGGGACAAAGATTGAATCAAAAGAAGTATTGTCTAAATTTTTGTTGGTCATTACCATTAGTCATTTATCTTGTTTCTTGAAACTTAGAGATAAACACAACATCCATAAGCATAGGAGATAGAATTGATTGAAAATTGTTATGAGTGTGTTTTGAAAGTGGGTTATTGTGGATTGTTGCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATATGCGTGTTTTCCCCATCTTAAGAAATGA

mRNA sequence

ATGGGTGGAGGCAATGGCCAGAAGTCTAGAATGGCTCGGGAGAGAAACCTGGAGAAACAAAAATCCGCAAGAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACCATACAGTGCAAGGTATGCATGCAGACATTCATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATATGCGTGTTTTCCCCATCTTAAGAAATGA

Coding sequence (CDS)

ATGGGTGGAGGCAATGGCCAGAAGTCTAGAATGGCTCGGGAGAGAAACCTGGAGAAACAAAAATCCGCAAGAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACCATACAGTGCAAGGTATGCATGCAGACATTCATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATATGCGTGTTTTCCCCATCTTAAGAAATGA

Protein sequence

MGGGNGQKSRMARERNLEKQKSARGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSDVYACFPHLKK
Homology
BLAST of Lag0037014 vs. NCBI nr
Match: XP_038897649.1 (uncharacterized protein At2g23090-like [Benincasa hispida])

HSP 1 Score: 154.1 bits (388), Expect = 5.0e-34
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MGGGNGQKSRMARERNLEKQKSARGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKS+MARERNLEKQKS+RGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKSKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

BLAST of Lag0037014 vs. NCBI nr
Match: XP_008452628.1 (PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 uncharacterized protein E6C27_scaffold255G001420 [Cucumis melo var. makuwa] >TYK20157.1 uncharacterized protein E5676_scaffold134G002860 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MGGGNGQKSRMARERNLEKQKSARGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK++MARERNLEKQKS+RGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

BLAST of Lag0037014 vs. NCBI nr
Match: XP_004141283.1 (uncharacterized protein At2g23090 [Cucumis sativus] >KGN55255.1 hypothetical protein Csa_012030 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.5e-33
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MGGGNGQKSRMARERNLEKQKSARGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK++MARERNLEKQK++RGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKSDVYACFPHLKK
Sbjct: 61 ARHPKSDVYACFPHLKK 77

BLAST of Lag0037014 vs. NCBI nr
Match: XP_022143957.1 (uncharacterized protein At2g23090-like isoform X2 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 5.5e-33
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MGGGNGQKSRMARERNLEKQKSARGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+RMARERN+EKQKS+RGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKARMARERNMEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVYACFPHLKK 78
          ARHPKS++YACFPHLKK
Sbjct: 61 ARHPKSELYACFPHLKK 77

BLAST of Lag0037014 vs. NCBI nr
Match: XP_015885066.1 (uncharacterized protein At2g23090-like isoform X1 [Ziziphus jujuba] >XP_015900560.1 uncharacterized protein At2g23090-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1   MGGGNGQKSRMARERNLEKQKSARGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
           MGGGNGQKS+MARERNLEKQK  RGSQLE+NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 65  MGGGNGQKSKMARERNLEKQKQNRGSQLESNKKAMTIQCKVCMQTFICTTTEVKCREHAE 124

Query: 61  ARHPKSDVYACFPHLKK 78
           A+HPKSDVYACFPHLKK
Sbjct: 125 AKHPKSDVYACFPHLKK 141

BLAST of Lag0037014 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-29
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 0

Query: 1  MGGGNGQKSRMARERNLEKQKSA-RGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QKS MAR +NLEK K+A +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVYACFPHLKK 78
          EA+HPK+DV ACFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897649.15.0e-3497.40uncharacterized protein At2g23090-like [Benincasa hispida][more]
XP_008452628.11.1e-3396.10PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 u... [more]
XP_004141283.12.5e-3394.81uncharacterized protein At2g23090 [Cucumis sativus] >KGN55255.1 hypothetical pro... [more]
XP_022143957.15.5e-3393.51uncharacterized protein At2g23090-like isoform X2 [Momordica charantia][more]
XP_015885066.12.1e-3293.51uncharacterized protein At2g23090-like isoform X1 [Ziziphus jujuba] >XP_01590056... [more]
Match NameE-valueIdentityDescription
O648183.0e-2982.05Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERF, N-terminalPFAMPF044194F5coord: 3..35
e-value: 1.3E-6
score: 29.2
IPR026939ZNF706/At2g23090 superfamilyGENE3D4.10.1050.10coord: 1..77
e-value: 8.6E-34
score: 117.8
IPR039438At2g23090-like, zinc-binding domainPFAMPF12907zf-met2coord: 38..75
e-value: 1.9E-20
score: 72.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..26
NoneNo IPR availablePANTHERPTHR33788:SF17SUBFAMILY NOT NAMEDcoord: 1..77
NoneNo IPR availableSUPERFAMILY118359Expressed protein At2g23090/F21P24.15coord: 1..76
IPR039713At2g23090-likePANTHERPTHR33788OS07G0114300 PROTEINcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037014.1Lag0037014.1mRNA