Lag0037001 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037001
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	MFP1 attachment factor 1
Location	chr2: 2734827 .. 2735312 (-)
RNA-Seq Expression	Lag0037001
Synteny	Lag0037001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGCCTGAGATCGCCGCCGTCTCTCCCACCGAACACGATTCTACCTCCCCGCCGACGAAACCGGCAACCGACTCCCAAGGAGATCAGGCCAAGGAGTCAACCAAATCATCCAAATCGTTCAACGCCTCCTTCAGCATTTGGCCCCCTTCGCAACGCACTCGCGACGCTGTCATCAAACGTCTGATCGAGACTCTCTCGAACCCCTCTGTTCTCTCCAAGCGCTATGGCACTGTACCCCACGAAGAGGCCGCTGAAGCAGCGCGTCTTATAGAGGAGGAAGCATATTCTTTCGCCGCCGCTAAAGCCAGCGCTGACGACGACGGGATCGAGATCCTTCAGCTATATTCTAGGGAGATCAGCAAGCGCACGCTCGAGACTGTCAAGGCTAGAGCCGCGTCCGATTCTCCTGCTGAAAACGGTTCGTCTCCTGTTGCATCGACGACCACTAACGAGGAAACCCCATCTGTTGAAGAATCCTGA

mRNA sequence

ATGTCTGAGCCTGAGATCGCCGCCGTCTCTCCCACCGAACACGATTCTACCTCCCCGCCGACGAAACCGGCAACCGACTCCCAAGGAGATCAGGCCAAGGAGTCAACCAAATCATCCAAATCGTTCAACGCCTCCTTCAGCATTTGGCCCCCTTCGCAACGCACTCGCGACGCTGTCATCAAACGTCTGATCGAGACTCTCTCGAACCCCTCTGTTCTCTCCAAGCGCTATGGCACTGTACCCCACGAAGAGGCCGCTGAAGCAGCGCGTCTTATAGAGGAGGAAGCATATTCTTTCGCCGCCGCTAAAGCCAGCGCTGACGACGACGGGATCGAGATCCTTCAGCTATATTCTAGGGAGATCAGCAAGCGCACGCTCGAGACTGTCAAGGCTAGAGCCGCGTCCGATTCTCCTGCTGAAAACGGTTCGTCTCCTGTTGCATCGACGACCACTAACGAGGAAACCCCATCTGTTGAAGAATCCTGA

Coding sequence (CDS)

ATGTCTGAGCCTGAGATCGCCGCCGTCTCTCCCACCGAACACGATTCTACCTCCCCGCCGACGAAACCGGCAACCGACTCCCAAGGAGATCAGGCCAAGGAGTCAACCAAATCATCCAAATCGTTCAACGCCTCCTTCAGCATTTGGCCCCCTTCGCAACGCACTCGCGACGCTGTCATCAAACGTCTGATCGAGACTCTCTCGAACCCCTCTGTTCTCTCCAAGCGCTATGGCACTGTACCCCACGAAGAGGCCGCTGAAGCAGCGCGTCTTATAGAGGAGGAAGCATATTCTTTCGCCGCCGCTAAAGCCAGCGCTGACGACGACGGGATCGAGATCCTTCAGCTATATTCTAGGGAGATCAGCAAGCGCACGCTCGAGACTGTCAAGGCTAGAGCCGCGTCCGATTCTCCTGCTGAAAACGGTTCGTCTCCTGTTGCATCGACGACCACTAACGAGGAAACCCCATCTGTTGAAGAATCCTGA

Protein sequence

MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSREISKRTLETVKARAASDSPAENGSSPVASTTTNEETPSVEES

Homology

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BLAST of Lag0037001 vs. NCBI nr
Match: XP_004141279.1 (MFP1 attachment factor 1 [Cucumis sativus] >KGN55241.1 hypothetical protein Csa_012612 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MSEPEIAAVSPTEHDSTSPPTKPATDSQ-GDQAKESTKSSKSFNASFSIWPPSQRTRDAV 60
           MS+P+IAA +PTEHDS +PP    TDSQ GDQAKESTKS KSFN SFSIWPPSQRTRDAV
Sbjct: 1   MSDPQIAAGTPTEHDSPTPP----TDSQVGDQAKESTKSPKSFNTSFSIWPPSQRTRDAV 60

Query: 61  IKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSR 120
           IKRLIETLSNPSVLSKRYGTVP EEAAEAARLIEEEAYSFAA KASADDDGIEILQLYSR
Sbjct: 61  IKRLIETLSNPSVLSKRYGTVPQEEAAEAARLIEEEAYSFAAGKASADDDGIEILQLYSR 120

Query: 121 EISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEES 162
           EISKRTLETVKARAASDS AENGSS PV STTTNEETPSVEES
Sbjct: 121 EISKRTLETVKARAASDSTAENGSSPPVVSTTTNEETPSVEES 159

[Close]

BLAST of Lag0037001 vs. NCBI nr
Match: XP_008452611.1 (PREDICTED: MFP1 attachment factor 1-like [Cucumis melo] >KAA0064423.1 MFP1 attachment factor 1-like [Cucumis melo var. makuwa] >TYK20164.1 MFP1 attachment factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-61
Identity = 143/163 (87.73%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MSEPEIAAVSPTEHDSTSPPTKPATDSQ-GDQAKESTKSSKSFNASFSIWPPSQRTRDAV 60
           MS+P+IAA +PTEHDS +PP    TDSQ GDQAKESTKS KSFN SFSIWPPSQRTRDAV
Sbjct: 1   MSDPQIAAGTPTEHDSPTPP----TDSQVGDQAKESTKSPKSFNTSFSIWPPSQRTRDAV 60

Query: 61  IKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSR 120
           +KRLIETLSNPSVLSKRYGTVP EEAAEAARLIEEEAYSFAA KASADDDGIEILQLYSR
Sbjct: 61  VKRLIETLSNPSVLSKRYGTVPQEEAAEAARLIEEEAYSFAAGKASADDDGIEILQLYSR 120

Query: 121 EISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEES 162
           EISKRTLETVKARAASDS AENGSS PV STTTNEETPSVE+S
Sbjct: 121 EISKRTLETVKARAASDSTAENGSSPPVVSTTTNEETPSVEQS 159

[Close]

BLAST of Lag0037001 vs. NCBI nr
Match: XP_022143006.1 (MFP1 attachment factor 1-like [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-57
Identity = 136/162 (83.95%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 1   MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVI 60
           MSEPEIAAV       TSPP+K ATDS GDQAKE TKS KSF+ASFSIWPPSQRTRDAV+
Sbjct: 1   MSEPEIAAV------PTSPPSKAATDSPGDQAKELTKSPKSFSASFSIWPPSQRTRDAVV 60

Query: 61  KRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120
           KRLIETLSNPSVLSKRYGTVP +EAAEAARLIEEEAYSFAA+KA+ADDDGIEILQLYSRE
Sbjct: 61  KRLIETLSNPSVLSKRYGTVPQDEAAEAARLIEEEAYSFAASKANADDDGIEILQLYSRE 120

Query: 121 ISKRTLETVKARAASDSPAENG-SSPVASTTTNEETPSVEES 162
           ISKRTLETVKA+AA DS AENG SSP AS T  EETPSVEES
Sbjct: 121 ISKRTLETVKAKAAPDSTAENGSSSPAASATIKEETPSVEES 156

[Close]

BLAST of Lag0037001 vs. NCBI nr
Match: XP_038899942.1 (MFP1 attachment factor 1-like [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 4.0e-57
Identity = 138/163 (84.66%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MSEPEIAAVSPTEHDSTSPPTKPATDSQ-GDQAKESTKSSKSFNASFSIWPPSQRTRDAV 60
           MSEP+IAA+  TE DSTS    P TDSQ GD  KESTKS KSFN SFSIWPPSQRTRDAV
Sbjct: 1   MSEPQIAALPSTEQDSTS----PTTDSQAGDLPKESTKSPKSFNTSFSIWPPSQRTRDAV 60

Query: 61  IKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSR 120
           IKRLIETLSNPSVLSKRYGTVP +EA+EAARLIEEEAYSFAA KA+ADDDGIEILQLYSR
Sbjct: 61  IKRLIETLSNPSVLSKRYGTVPQDEASEAARLIEEEAYSFAAGKATADDDGIEILQLYSR 120

Query: 121 EISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEES 162
           EISKRTLETVKARAASDS  ENGSS PV STTTN ETPSVEES
Sbjct: 121 EISKRTLETVKARAASDSTTENGSSPPVVSTTTNAETPSVEES 159

[Close]

BLAST of Lag0037001 vs. NCBI nr
Match: KAG6591406.1 (MFP1 attachment factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-55
Identity = 133/161 (82.61%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1   MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVI 60
           MSEPEIA V  TE            DS GDQAKES KSSKSF+ SFSIWPPSQRTRDAVI
Sbjct: 1   MSEPEIATVPTTEQ-----------DSPGDQAKESPKSSKSFSTSFSIWPPSQRTRDAVI 60

Query: 61  KRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120
           KRLIETLSNPSVLSKRYGTVPHEEA +AARLIEEEAYSFAAAKASADDDGIEILQLYSRE
Sbjct: 61  KRLIETLSNPSVLSKRYGTVPHEEATDAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120

Query: 121 ISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEE 161
           ISKRTL+TVKARAASDS AENGSS PV STT  EETPSV+E
Sbjct: 121 ISKRTLDTVKARAASDSTAENGSSAPVVSTTDKEETPSVQE 150

[Close]

BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match: Q9M7N6 (MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 27  SQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLSKRYGTVPHEEAA 86
           +Q  +       +K    SFSIWPP+QRTRDAVI RLIE+LS PS+LSKRYGT+P +EA+
Sbjct: 7   AQSQETVTQETQNKPMTTSFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEAS 66

Query: 87  EAARLIEEEAYSFAAAKASADDDGIEILQLYSREISKRTLETVKARAASDSPAENGSSP 146
           E ARLIEEEA++ A + AS  DDGIEILQ+YS+EISKR ++TVK+R+A  + +E  S P
Sbjct: 67  ETARLIEEEAFAAAGSTASDADDGIEILQVYSKEISKRMIDTVKSRSAPAAASEGESKP 125

[Close]

BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match: Q9C500 (WPP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=WPP2 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 76/152 (50.00%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 2   SEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIK 61
           S P  +  S T    T P ++ A     D  KE+    K    S  IWPP+Q+TRDAV+ 
Sbjct: 14  SPPPESESSTTISAMTDPTSQEAASKDTDLTKEAESEKKPGGISLRIWPPTQKTRDAVLN 73

Query: 62  RLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSREI 121
           RLIETLS  S+LSKRYGT+  ++A   A+LIEEEAY  A+   S+DDDGI+IL+LYS+EI
Sbjct: 74  RLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEI 133

Query: 122 SKRTLETVKARAASDSPAENGSSPVASTTTNE 154
           SKR LE+VKAR  S++   NGS   A+T  +E
Sbjct: 134 SKRMLESVKAR--SNASVGNGSVEDANTDASE 163

[Close]

BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match: Q9FMH6 (WPP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=WPP1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 68/153 (44.44%), Postives = 95/153 (62.09%), Query Frame = 0


Query: 1   MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVI 60
           M+E E  +++     S+ PP     +S      E+ K+      S  IWPP+Q+TRDAVI
Sbjct: 1   MAETETESIT----TSSPPPISETENSTTLPTTETEKNPNPVTISLRIWPPTQKTRDAVI 60

Query: 61  KRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120
            RLIETLS  S+LSKR+G++  EEA+  A+ IE+EAY+ A+A    DDDGIEIL+ YS+E
Sbjct: 61  NRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIEILKAYSKE 120

Query: 121 ISKRTLETVKARAASDSPAENGSSPVASTTTNE 154
           ISKR LE+VKA++   SP       + S   ++
Sbjct: 121 ISKRMLESVKAKSNVASPPPKDGDGIESAVDSK 149

[Close]

BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match: Q0WQ91 (WPP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=WPP3 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 15  DSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLS 74
           +S S  T      + D   E TK  KS    FS+WPP Q++RD V+  +I+TLS  S+LS
Sbjct: 20  ESRSDETSCLQKHRSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILS 79

Query: 75  KRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSREISKRTLETVKARAA 134
            +YGT+  EEA+  A+ IEE+AY  A+   S+  DGI+ L++Y  E S+R +E+ + R  
Sbjct: 80  YKYGTIKPEEASAVAKSIEEKAYDIASRFVSS--DGIKNLEVYGIETSERMIESAEVRFK 139

Query: 135 SDSPAE 141
           ++   E
Sbjct: 140 ANGSME 143

[Close]

BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match: Q9LE82 (RAN GTPase-activating protein 1 OS=Arabidopsis thaliana OX=3702 GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 34/108 (31.48%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 35  STKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEE 94
           S K++++   S  +WPPS+ TR  +++R+ + ++ PS+ S++YG +  EEA + A+ IE+
Sbjct: 4   SAKTTQNRVLSVKMWPPSKSTRLMLVERMTKNITTPSIFSRKYGLLSVEEAEQDAKRIED 63

Query: 95  EAYSFAAA--KASADDDGIEILQLYSREISKRTLETVKARAASDSPAE 141
            A++ A    +   D DG   + +Y++E SK  L+ +K     +S  E
Sbjct: 64  LAFATANKHFQNEPDGDGTSAVHVYAKESSKLMLDVIKRGPQEESEVE 111

The following BLAST results are available for this feature:

BLAST of Lag0037001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141279.1	1.2e-61	88.96	MFP1 attachment factor 1 [Cucumis sativus] >KGN55241.1 hypothetical protein Csa_...	[more]
XP_008452611.1	3.5e-61	87.73	PREDICTED: MFP1 attachment factor 1-like [Cucumis melo] >KAA0064423.1 MFP1 attac...	[more]
XP_022143006.1	3.0e-57	83.95	MFP1 attachment factor 1-like [Momordica charantia]	[more]
XP_038899942.1	4.0e-57	84.66	MFP1 attachment factor 1-like [Benincasa hispida]	[more]
KAG6591406.1	2.2e-55	82.61	MFP1 attachment factor 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0037001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M7N6	1.2e-29	58.82	MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1	[more]
Q9C500	2.2e-26	50.00	WPP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=WPP2 PE=1 SV=...	[more]
Q9FMH6	5.1e-23	44.44	WPP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=WPP1 PE=1 SV=...	[more]
Q0WQ91	1.5e-14	39.68	WPP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=WPP3 PE=2 SV=...	[more]
Q9LE82	4.6e-08	31.48	RAN GTPase-activating protein 1 OS=Arabidopsis thaliana OX=3702 GN=RANGAP1 PE=1 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038214	WPP domain superfamily	GENE3D	1.10.246.200	WPP domain	coord: 45..139 e-value: 1.5E-39 score: 136.3
IPR025265	WPP domain	PFAM	PF13943	WPP	coord: 45..136 e-value: 1.1E-38 score: 131.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..155
None	No IPR available	PANTHER	PTHR34362:SF1	WPP DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 1..157
IPR044692	WPP domain-containing protein 1/2/3	PANTHER	PTHR34362	WPP DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037001.1	Lag0037001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048527	lateral root development
biological_process	GO:0000278	mitotic cell cycle
cellular_component	GO:0005634	nucleus