Lag0036994 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036994
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptioncyclic dof factor 3-like
Locationchr2: 2692582 .. 2693250 (+)
RNA-Seq ExpressionLag0036994
SyntenyLag0036994
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTCGGTGAGGTCGTCGTCGACGTGGGAGTGGTGGTCGTTGAGGTCGAGGTTGTGCATGTGGGCGGCCTTGGCGGCGGCGGCTTGGACGTCGCGAGGGGCGAGGGAGACGGGGCGGGGGAGGAGGTGGAGGAGGTCGGGGAAATTGAGGGTGGCGGAGGACCGAGTTGCCCAATGCCAGCGGAGACTCACAATATCCAATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCTCTCTTTCTATTTTCCTTCTGCTAATTTTCTCGCGCTCTTTTTCCTTTTCATTTCGTCTGCAAAAATGCTGGAAATTATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCTGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCCAGTTCCGACAAAGAAACACCAGATGGAGCAGTGGCAAAGGTACAGTTCAGTCAATCAAGAATTTTGTGTGCTCTGTTAATGAAACCTGAATTCGACCTGCTTGTTTTAGCGAATTTCGTACTAGTGTTACTCGGTTGGTTTTTTTTTTTACTGTTTCCCTCTCTCTATTCCTCTCTGGCAACTGCGATACTCTGGCCCGGCGGTTGGTGTGTTGACCCTTTTAGATGTTCTTCAGATTTTGTTGTTTCCGGTTTTTGA

mRNA sequence

ATGATCTCGGTGAGGTCGTCGTCGACGTGGGAGTGGTGGTCGTTGAGGTCGAGGTTGTGCATGTGGGCGGCCTTGGCGGCGGCGGCTTGGACGTCGCGAGGGGCGAGGGAGACGGGGCGGGGGAGGAGGTGGAGGAGGTCGGGGAAATTGAGGGTGGCGGAGGACCGAGTTGCCCAATGCCAGCGGAGACTCACAATATCCAATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCTCTCTTTCTATTTTCCTTCTGCTAATTTTCTCGCGCTCTTTTTCCTTTTCATTTCGTCTGCAAAAATGCTGGAAATTATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCTGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCCAGTTCCGACAAAGAAACACCAGATGGAGCAGTGGCAAAGGTACAGTTCAGTCAATCAAGAATTTTGTGTGCTCTGTTAATGAAACCTGAATTCGACCTGCTTGTTTTAGCGAATTTCGTACTAGTGTTACTCGGTTGGTTTTTTTTTTTACTGTTTCCCTCTCTCTATTCCTCTCTGGCAACTGCGATACTCTGGCCCGGCGGTTGGTGTGTTGACCCTTTTAGATGTTCTTCAGATTTTGTTGTTTCCGGTTTTTGA

Coding sequence (CDS)

ATGATCTCGGTGAGGTCGTCGTCGACGTGGGAGTGGTGGTCGTTGAGGTCGAGGTTGTGCATGTGGGCGGCCTTGGCGGCGGCGGCTTGGACGTCGCGAGGGGCGAGGGAGACGGGGCGGGGGAGGAGGTGGAGGAGGTCGGGGAAATTGAGGGTGGCGGAGGACCGAGTTGCCCAATGCCAGCGGAGACTCACAATATCCAATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCTCTCTTTCTATTTTCCTTCTGCTAATTTTCTCGCGCTCTTTTTCCTTTTCATTTCGTCTGCAAAAATGCTGGAAATTATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCTGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCCAGTTCCGACAAAGAAACACCAGATGGAGCAGTGGCAAAGGTACAGTTCAGTCAATCAAGAATTTTGTGTGCTCTGTTAATGAAACCTGAATTCGACCTGCTTGTTTTAGCGAATTTCGTACTAGTGTTACTCGGTTGGTTTTTTTTTTTACTGTTTCCCTCTCTCTATTCCTCTCTGGCAACTGCGATACTCTGGCCCGGCGGTTGGTGTGTTGACCCTTTTAGATGTTCTTCAGATTTTGTTGTTTCCGGTTTTTGA

Protein sequence

MISVRSSSTWEWWSLRSRLCMWAALAAAAWTSRGARETGRGRRWRRSGKLRVAEDRVAQCQRRLTISNSSSSSSSSSSSSLSFYFPSANFLALFFLFISSAKMLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAKVQFSQSRILCALLMKPEFDLLVLANFVLVLLGWFFFLLFPSLYSSLATAILWPGGWCVDPFRCSSDFVVSGF
Homology
[Close]
BLAST of Lag0036994 vs. NCBI nr
Match: XP_038879380.1 (cyclic dof factor 3 [Benincasa hispida] >XP_038879381.1 cyclic dof factor 3 [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-09
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE IKDPAIKIFGKEIPLPAD EV LI++DDSDS+SDKET DGA+ K
Sbjct: 1   MLE-IKDPAIKIFGKEIPLPADCEVSLIKSDDSDSASDKETGDGALQK 47

[Close]
BLAST of Lag0036994 vs. NCBI nr
Match: XP_023531924.1 (cyclic dof factor 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-08
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 107 IKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           IKD AI+IFGKEIPLPADSE PL+E+DDSDSSS+KE  DGAV K
Sbjct: 4   IKDSAIRIFGKEIPLPADSEAPLMESDDSDSSSEKENRDGAVEK 47

[Close]
BLAST of Lag0036994 vs. NCBI nr
Match: XP_022987186.1 (cyclic dof factor 3-like [Cucurbita maxima])

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-08
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE IKDPAIKIFGKEI LPAD EVPLIE+DDSDSSS KE  D AV K
Sbjct: 1   MLE-IKDPAIKIFGKEIQLPADCEVPLIESDDSDSSSQKENRDEAVEK 47

[Close]
BLAST of Lag0036994 vs. NCBI nr
Match: KAG6589512.1 (Cyclic dof factor 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-08
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE IKDPAIKIFGKEI LPAD EVPLIE+DDSDSSS KE  D AV K
Sbjct: 1   MLE-IKDPAIKIFGKEIQLPADCEVPLIESDDSDSSSQKENRDEAVEK 47

[Close]
BLAST of Lag0036994 vs. NCBI nr
Match: XP_023516313.1 (cyclic dof factor 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-08
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE IKDPAIKIFGKEI LPAD EVPLIE+DDSDSSS KE  D AV K
Sbjct: 1   MLE-IKDPAIKIFGKEIQLPADCEVPLIESDDSDSSSQKENRDEAVEK 47

[Close]
BLAST of Lag0036994 vs. ExPASy TrEMBL
Match: A0A6J1JDF4 (cyclic dof factor 3-like OS=Cucurbita maxima OX=3661 GN=LOC111484811 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE IKDPAIKIFGKEI LPAD EVPLIE+DDSDSSS KE  D AV K
Sbjct: 1   MLE-IKDPAIKIFGKEIQLPADCEVPLIESDDSDSSSQKENRDEAVEK 47

[Close]
BLAST of Lag0036994 vs. ExPASy TrEMBL
Match: A0A6J1E146 (cyclic dof factor 3-like OS=Cucurbita moschata OX=3662 GN=LOC111429843 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE IKDPAIKIFGKEI LPAD EVPLIE+DDSDSSS KE  D AV K
Sbjct: 1   MLE-IKDPAIKIFGKEIQLPADCEVPLIESDDSDSSSQKENRDEAVEK 47

[Close]
BLAST of Lag0036994 vs. ExPASy TrEMBL
Match: A0A6J1IC93 (cyclic dof factor 3-like OS=Cucurbita maxima OX=3661 GN=LOC111471198 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-08
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 107 IKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           IKD AI+IFGK+IPLPADSE PL+E+DDSDSSS+KE  DGAV K
Sbjct: 4   IKDSAIRIFGKKIPLPADSEAPLMESDDSDSSSEKENRDGAVEK 47

[Close]
BLAST of Lag0036994 vs. ExPASy TrEMBL
Match: A0A6J1BZY6 (cyclic dof factor 3-like OS=Momordica charantia OX=3673 GN=LOC111006802 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE IKDPAIKIFGKEIPLPAD E+PLIE+DDSDSSS+K+   GA  K
Sbjct: 1   MLE-IKDPAIKIFGKEIPLPADCELPLIESDDSDSSSEKDGEYGAGEK 47

[Close]
BLAST of Lag0036994 vs. ExPASy TrEMBL
Match: A0A6J1F026 (cyclic dof factor 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440945 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 103 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSDKETPDGAVAK 151
           MLE +KD AI+IFGK+IPLPAD E PL+++DD DSSS+KE  DGAV K
Sbjct: 1   MLE-MKDSAIRIFGKKIPLPADFEAPLMQSDDLDSSSEKENRDGAVEK 47

The following BLAST results are available for this feature:
BLAST of Lag0036994 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879380.15.5e-0981.25cyclic dof factor 3 [Benincasa hispida] >XP_038879381.1 cyclic dof factor 3 [Ben... [more]
XP_023531924.12.7e-0879.55cyclic dof factor 3-like [Cucurbita pepo subsp. pepo][more]
XP_022987186.16.1e-0881.25cyclic dof factor 3-like [Cucurbita maxima][more]
KAG6589512.16.1e-0881.25Cyclic dof factor 3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023516313.16.1e-0881.25cyclic dof factor 3-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0036994 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0036994 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JDF43.0e-0881.25cyclic dof factor 3-like OS=Cucurbita maxima OX=3661 GN=LOC111484811 PE=4 SV=1[more]
A0A6J1E1463.0e-0881.25cyclic dof factor 3-like OS=Cucurbita moschata OX=3662 GN=LOC111429843 PE=4 SV=1[more]
A0A6J1IC933.9e-0877.27cyclic dof factor 3-like OS=Cucurbita maxima OX=3661 GN=LOC111471198 PE=4 SV=1[more]
A0A6J1BZY61.1e-0777.08cyclic dof factor 3-like OS=Momordica charantia OX=3673 GN=LOC111006802 PE=4 SV=... [more]
A0A6J1F0262.8e-0668.75cyclic dof factor 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11144094... [more]
BLAST of Lag0036994 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036994.1Lag0036994.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity