Lag0036968 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036968
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr2: 2458199 .. 2458943 (+)
RNA-Seq ExpressionLag0036968
SyntenyLag0036968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCTTTACCGCCTCTGAGTTCGCGAATAGTCTGCAGATTTTCAACTTGTTTTATTTTGCGTCGAACAATTTGGAATCGGAGATTTGGTAGTGATGATGGCTTTGAGTCTGTTGTAGAACCCTTTAAGAAGGGGTTGGAAAAATCAGAGCTTGATTACTTTACGGATGAAAATTCAGATTCTTGTGAGTTTGGGAGTCGTAGATGGGATAATTTGTCGGTGAGAATGGGCTTTCTTGAGGATGCAAAAACTGATGCTGAAAAAGCTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTATTGGCTTCGGATGAACTGCAACTAAAGGTCTCAGGCGCTCTTGTTAGGGAAAATCTGAGGGGGATTTTGAGGTATAAATGTTCTAAACAAAACTCTGTGTGCAAAATTGGGGTACAAGTTTTTCGTGTGGTCTGGTAAGGTCGAGAATTACAGACACACGGCGAGCTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCGAGGCTATATGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTAACATGTACTTGTGGTGATGCAGGCTTCGCTAGGAAAGTTGTTGAGAGGTTTATCAAATGCCATTCTCCATGCACTTCTTGTTATAAAACAGTACAAGAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGAAAATTTTGCGTAG

mRNA sequence

ATGAAGTCTTTACCGCCTCTGAGTTCGCGAATAGTCTGCAGATTTTCAACTTGTTTTATTTTGCGTCGAACAATTTGGAATCGGAGATTTGGTAGTGATGATGGCTTTGAGTCTGTTGTAGAACCCTTTAAGAAGGGGTTGGAAAAATCAGAGCTTGATTACTTTACGGATGAAAATTCAGATTCTTGTGAGTTTGGGAGTCGTAGATGGGATAATTTGTCGGTGAGAATGGGCTTTCTTGAGGATGCAAAAACTGATGCTGAAAAAGCTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTATTGGCTTCGGATGAACTGCAACTAAAGGTCTCAGGCGCTCTTGTTAGGGAAAATCTGAGGGGGATTTTGAGACACACGGCGAGCTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCGAGGCTATATGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTAACATGTACTTGTGGTGATGCAGGCTTCGCTAGGAAAGTTGTTGAGAGGTTTATCAAATGCCATTCTCCATGCACTTCTTGTTATAAAACAGTACAAGAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGAAAATTTTGCGTAG

Coding sequence (CDS)

ATGAAGTCTTTACCGCCTCTGAGTTCGCGAATAGTCTGCAGATTTTCAACTTGTTTTATTTTGCGTCGAACAATTTGGAATCGGAGATTTGGTAGTGATGATGGCTTTGAGTCTGTTGTAGAACCCTTTAAGAAGGGGTTGGAAAAATCAGAGCTTGATTACTTTACGGATGAAAATTCAGATTCTTGTGAGTTTGGGAGTCGTAGATGGGATAATTTGTCGGTGAGAATGGGCTTTCTTGAGGATGCAAAAACTGATGCTGAAAAAGCTCTTGAGGTTCTCAAACAGGATGGTCCTGGATTTGACACATTATTGGCTTCGGATGAACTGCAACTAAAGGTCTCAGGCGCTCTTGTTAGGGAAAATCTGAGGGGGATTTTGAGACACACGGCGAGCTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGGAGTTCGAGGCTATATGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTAACATGTACTTGTGGTGATGCAGGCTTCGCTAGGAAAGTTGTTGAGAGGTTTATCAAATGCCATTCTCCATGCACTTCTTGTTATAAAACAGTACAAGAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGAAAATTTTGCGTAG

Protein sequence

MKSLPPLSSRIVCRFSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDENSDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALVRENLRGILRHTASSYHMIMKIFAECEEFEAIWRLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKCHSPCTSCYKTVQELIEWVYQQMLLENFA
Homology
BLAST of Lag0036968 vs. NCBI nr
Match: XP_022141309.1 (pentatricopeptide repeat-containing protein At1g55630-like [Momordica charantia])

HSP 1 Score: 307.0 bits (785), Expect = 1.3e-79
Identity = 163/258 (63.18%), Postives = 183/258 (70.93%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCRFSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDENS 60
           M S+  LSSRIVCRFST FI+R T+WNR F SDDGFE VVEPFK+  ++SEL  FTDENS
Sbjct: 1   MNSISLLSSRIVCRFSTSFIVRLTVWNRSFSSDDGFECVVEPFKRVCKRSELGCFTDENS 60

Query: 61  DSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALVR 120
           DS EFG RRWD+ SVR GFLEDA++DAEK LEVLKQDGPGFDT+LA DELQ+KVSG LVR
Sbjct: 61  DSSEFGGRRWDDFSVRRGFLEDARSDAEKVLEVLKQDGPGFDTILALDELQIKVSGFLVR 120

Query: 121 ENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIWR 180
           E L  IL                            RHTASSYH+IMKIFA+CEEF+A+WR
Sbjct: 121 EVLMRILRSINFVDKTQCAKLGYKFFVWSGKVENYRHTASSYHIIMKIFAQCEEFKAMWR 180

Query: 181 LVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV----- 218
           LVDEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK     + P    Y  +     
Sbjct: 181 LVDEMTEKGYPVTARTFIILICTCGDAGLARKVVERFIKSKTFNYRPFKHAYNAILHGLL 240

BLAST of Lag0036968 vs. NCBI nr
Match: XP_023552266.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552267.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023552268.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.0 bits (759), Expect = 1.4e-76
Identity = 164/259 (63.32%), Postives = 181/259 (69.88%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCR-FSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M SL  +SSRIVCR FST FI+RRTI NR FG DD FE VVEP KK LE SE  YFTDEN
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTICNRSFGGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
           SDSCE GSRR D+LS+R GFLE AK  AEK +E+LKQDGPGFDTLLA DELQL+VSG LV
Sbjct: 61  SDSCEIGSRRGDDLSMRRGFLEGAKIGAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 RENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIW 180
           RE L+GIL                            RHTASSYHM+MKIFAECEEF+A+W
Sbjct: 121 REVLKGILRSINVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKCHS----PCTSCYKTV---- 218
           RL+DEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK  +    P    Y  +    
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

BLAST of Lag0036968 vs. NCBI nr
Match: XP_023552269.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.0 bits (759), Expect = 1.4e-76
Identity = 164/259 (63.32%), Postives = 181/259 (69.88%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCR-FSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M SL  +SSRIVCR FST FI+RRTI NR FG DD FE VVEP KK LE SE  YFTDEN
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTICNRSFGGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
           SDSCE GSRR D+LS+R GFLE AK  AEK +E+LKQDGPGFDTLLA DELQL+VSG LV
Sbjct: 61  SDSCEIGSRRGDDLSMRRGFLEGAKIGAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 RENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIW 180
           RE L+GIL                            RHTASSYHM+MKIFAECEEF+A+W
Sbjct: 121 REVLKGILRSVNVLNKTQCAKSGYKFFVWSGKVENYRHTASSYHMVMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKCHS----PCTSCYKTV---- 218
           RL+DEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK  +    P    Y  +    
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

BLAST of Lag0036968 vs. NCBI nr
Match: XP_022922468.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.7e-74
Identity = 161/259 (62.16%), Postives = 179/259 (69.11%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCR-FSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M SL  +SSRIVCR  ST FI+RR I NR F  DD FE VVEP KK LE SE  YFTDEN
Sbjct: 1   MNSLSLVSSRIVCRLLSTSFIVRRAICNRSFSGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
            DSCE GSRR D+LS+R  FLE+AKTDAEK +E+LKQDGPGFDTLLA DELQL+VSG LV
Sbjct: 61  LDSCEIGSRREDDLSMRKVFLENAKTDAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 RENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIW 180
           RE L+GIL                            RHTASSYHM+MKIFAECEEF+A+W
Sbjct: 121 REVLKGILRSVNVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKCHS----PCTSCYKTV---- 218
           RL+DEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK  +    P    Y  +    
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

BLAST of Lag0036968 vs. NCBI nr
Match: KAG6576727.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.3 bits (739), Expect = 2.9e-74
Identity = 161/259 (62.16%), Postives = 179/259 (69.11%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCR-FSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M SL  +SSRIV R  ST FI+RR I NR F  DD FE VVEP KK LE SE  YFTDEN
Sbjct: 1   MNSLSLVSSRIVYRLLSTSFIVRRAICNRSFSGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
            DSCE GSRR D+LS+R GFLE+AKTDAEK +E+LKQDGPGFDTLLA DELQL+VSG LV
Sbjct: 61  LDSCEIGSRREDDLSMRRGFLENAKTDAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 RENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIW 180
           RE L+GIL                            RHTASSYHM+MKIFAECEEF+A+W
Sbjct: 121 REVLKGILRSVNVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKCHS----PCTSCYKTV---- 218
           RL+DEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK  +    P    Y  +    
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

BLAST of Lag0036968 vs. ExPASy Swiss-Prot
Match: Q7X6A5 (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana OX=3702 GN=At1g55630 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.5e-38
Identity = 102/262 (38.93%), Postives = 134/262 (51.15%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCRFSTCFIL-RRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M S+   S+ +  R ++ F+   R   N   G D       EP K   E SE+D      
Sbjct: 1   MNSVIHYSTSVAVRKASRFLFTSRKFCNGSIGGDVTDNGTEEPLKITWESSEMD------ 60

Query: 61  SDSCEFG-SRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGAL 120
              CEF      + +SVR  F+E  K  A + L+ L+QD PGF+T  A DEL + +SG L
Sbjct: 61  ---CEFDQEENGEKISVRKRFMESTKLSASRVLDTLQQDCPGFNTKSALDELNVSISGLL 120

Query: 121 VRENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAI 180
           VRE L GIL                            RHTA+ YH++MKIFAEC E++A+
Sbjct: 121 VREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAM 180

Query: 181 WRLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV--- 220
            RL+DEM + GYP TA TF LL CTCG+AG AR VVE+FIK     + P    Y  +   
Sbjct: 181 CRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHS 240

BLAST of Lag0036968 vs. ExPASy Swiss-Prot
Match: Q9M1D8 (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana OX=3702 GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.0e-34
Identity = 95/258 (36.82%), Postives = 131/258 (50.78%), Query Frame = 0

Query: 7   LSSRIVCRFSTCFILRRTIWNRRFGS---DDGFESVVEPFKKGLEKSELDYFTDENSDSC 66
           L + +V +      + R   N  FG    D+GF              +LD   DE+S+  
Sbjct: 7   LGTNVVRKAYRFLFISRKFCNGNFGGNEIDNGF-------------PDLDCGFDEDSNIS 66

Query: 67  EFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALVRENL 126
           E  S   + +SVR  FLE A   A + L  L+ D  GF++    DEL ++VSG LVRE L
Sbjct: 67  ELRSIDREVISVRSRFLESANHSASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVL 126

Query: 127 RGIL----------------------------RHTASSYHMIMKIFAECEEFEAIWRLVD 186
            GIL                            RHT +SYH++MKIFAEC E++A+WRLVD
Sbjct: 127 VGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVD 186

Query: 187 EMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV-------- 221
           EM + G+P TARTF LL C+CG+AG A++ V +F+K     + P    Y  +        
Sbjct: 187 EMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVK 246

BLAST of Lag0036968 vs. ExPASy TrEMBL
Match: A0A6J1CI85 (pentatricopeptide repeat-containing protein At1g55630-like OS=Momordica charantia OX=3673 GN=LOC111011735 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 6.4e-80
Identity = 163/258 (63.18%), Postives = 183/258 (70.93%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCRFSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDENS 60
           M S+  LSSRIVCRFST FI+R T+WNR F SDDGFE VVEPFK+  ++SEL  FTDENS
Sbjct: 1   MNSISLLSSRIVCRFSTSFIVRLTVWNRSFSSDDGFECVVEPFKRVCKRSELGCFTDENS 60

Query: 61  DSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALVR 120
           DS EFG RRWD+ SVR GFLEDA++DAEK LEVLKQDGPGFDT+LA DELQ+KVSG LVR
Sbjct: 61  DSSEFGGRRWDDFSVRRGFLEDARSDAEKVLEVLKQDGPGFDTILALDELQIKVSGFLVR 120

Query: 121 ENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIWR 180
           E L  IL                            RHTASSYH+IMKIFA+CEEF+A+WR
Sbjct: 121 EVLMRILRSINFVDKTQCAKLGYKFFVWSGKVENYRHTASSYHIIMKIFAQCEEFKAMWR 180

Query: 181 LVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV----- 218
           LVDEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK     + P    Y  +     
Sbjct: 181 LVDEMTEKGYPVTARTFIILICTCGDAGLARKVVERFIKSKTFNYRPFKHAYNAILHGLL 240

BLAST of Lag0036968 vs. ExPASy TrEMBL
Match: A0A6J1E6P6 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata OX=3662 GN=LOC111430470 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 8.1e-75
Identity = 161/259 (62.16%), Postives = 179/259 (69.11%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCR-FSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M SL  +SSRIVCR  ST FI+RR I NR F  DD FE VVEP KK LE SE  YFTDEN
Sbjct: 1   MNSLSLVSSRIVCRLLSTSFIVRRAICNRSFSGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
            DSCE GSRR D+LS+R  FLE+AKTDAEK +E+LKQDGPGFDTLLA DELQL+VSG LV
Sbjct: 61  LDSCEIGSRREDDLSMRKVFLENAKTDAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 RENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIW 180
           RE L+GIL                            RHTASSYHM+MKIFAECEEF+A+W
Sbjct: 121 REVLKGILRSVNVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKCHS----PCTSCYKTV---- 218
           RL+DEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK  +    P    Y  +    
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

BLAST of Lag0036968 vs. ExPASy TrEMBL
Match: A0A6J1JDA6 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima OX=3661 GN=LOC111483452 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.8e-74
Identity = 161/259 (62.16%), Postives = 177/259 (68.34%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCR-FSTCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M SL  +SSRIVCR     FI+RR I NR FG DD FE VVEP KK LE SE  YFTDEN
Sbjct: 1   MNSLSLVSSRIVCRLLPPSFIVRRAICNRSFGGDDRFEFVVEPNKKRLEGSEFGYFTDEN 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
           SDSCE GSRR D+LS+R GF E AK DAEK +E+LKQDGPGFDTLLA DELQL+VSG LV
Sbjct: 61  SDSCEIGSRRGDDLSMRRGFPEGAKIDAEKVIEILKQDGPGFDTLLALDELQLQVSGVLV 120

Query: 121 RENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAIW 180
           RE L+GIL                            RHTASSYHMIMKIFAECEEF+A+W
Sbjct: 121 REVLKGILRSVNVLNKTQCAKLGYKFFLWSGKVENYRHTASSYHMIMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKCHS----PCTSCYKTV---- 218
           RL+DEMTEKGYPVTARTF +L CTCGDAG ARKVVERFIK  +    P    Y  +    
Sbjct: 181 RLLDEMTEKGYPVTARTFMILICTCGDAGLARKVVERFIKSKTFNFRPFKHSYNAILHGL 240

BLAST of Lag0036968 vs. ExPASy TrEMBL
Match: A0A6J1FZ63 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata OX=3662 GN=LOC111449239 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 5.2e-74
Identity = 162/259 (62.55%), Postives = 178/259 (68.73%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCRF-STCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M +L  LS+RIVCR  S+ FI+RRTIWNR FGSDD FE V+EP+KKGLE+SE        
Sbjct: 1   MNALSLLSARIVCRLVSSSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSE-------- 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
             SCEF S R D+LSVR GFLED+KTDA K LEVLKQDGPGFDTL+A DELQLKVSG LV
Sbjct: 61  --SCEFESLRCDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLV 120

Query: 121 RENLRGILR----------------------------HTASSYHMIMKIFAECEEFEAIW 180
           RE LRGILR                            HTA SYHMIMKIFAECEEF+A+W
Sbjct: 121 REVLRGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTAGSYHMIMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV---- 218
           RLVDEMTEKGYPVTARTFTLL CTCGDAG ARKVVERFIK     + P    Y  +    
Sbjct: 181 RLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVERFIKSKTFNYRPFKHSYNAILHAL 240

BLAST of Lag0036968 vs. ExPASy TrEMBL
Match: A0A6J1HY31 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima OX=3661 GN=LOC111467699 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.4e-73
Identity = 161/259 (62.16%), Postives = 178/259 (68.73%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCRF-STCFILRRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M +L  LS+RIV R  S  FI+RRTIWNR FGSDD FE V+EP+KKGLE+SE        
Sbjct: 1   MNALSLLSTRIVWRLVSNSFIVRRTIWNRSFGSDDRFEFVMEPYKKGLERSE-------- 60

Query: 61  SDSCEFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALV 120
             SCEF S R+D+LSVR GFLED+KTDA K LEVLKQDGPGFDTL+A DELQLKVSG LV
Sbjct: 61  --SCEFESLRYDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLV 120

Query: 121 RENLRGILR----------------------------HTASSYHMIMKIFAECEEFEAIW 180
           RE LRGILR                            HTASSYH+IMKIFAECEEF+A+W
Sbjct: 121 REVLRGILRSINVLDKTQCAKLGYKFFVWSGKVENFNHTASSYHLIMKIFAECEEFKAMW 180

Query: 181 RLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV---- 218
           RLVDEMTEKGYPVTARTFTLL CTCGDAG ARKVVERFIK     + P    Y  +    
Sbjct: 181 RLVDEMTEKGYPVTARTFTLLICTCGDAGLARKVVERFIKSKTFNYRPFKHSYNAILHAL 240

BLAST of Lag0036968 vs. TAIR 10
Match: AT1G55630.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-39
Identity = 102/262 (38.93%), Postives = 134/262 (51.15%), Query Frame = 0

Query: 1   MKSLPPLSSRIVCRFSTCFIL-RRTIWNRRFGSDDGFESVVEPFKKGLEKSELDYFTDEN 60
           M S+   S+ +  R ++ F+   R   N   G D       EP K   E SE+D      
Sbjct: 1   MNSVIHYSTSVAVRKASRFLFTSRKFCNGSIGGDVTDNGTEEPLKITWESSEMD------ 60

Query: 61  SDSCEFG-SRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGAL 120
              CEF      + +SVR  F+E  K  A + L+ L+QD PGF+T  A DEL + +SG L
Sbjct: 61  ---CEFDQEENGEKISVRKRFMESTKLSASRVLDTLQQDCPGFNTKSALDELNVSISGLL 120

Query: 121 VRENLRGIL----------------------------RHTASSYHMIMKIFAECEEFEAI 180
           VRE L GIL                            RHTA+ YH++MKIFAEC E++A+
Sbjct: 121 VREVLVGILRTLSFDNKTRCAKLAYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAM 180

Query: 181 WRLVDEMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV--- 220
            RL+DEM + GYP TA TF LL CTCG+AG AR VVE+FIK     + P    Y  +   
Sbjct: 181 CRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHS 240

BLAST of Lag0036968 vs. TAIR 10
Match: AT3G60050.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-35
Identity = 95/258 (36.82%), Postives = 131/258 (50.78%), Query Frame = 0

Query: 7   LSSRIVCRFSTCFILRRTIWNRRFGS---DDGFESVVEPFKKGLEKSELDYFTDENSDSC 66
           L + +V +      + R   N  FG    D+GF              +LD   DE+S+  
Sbjct: 7   LGTNVVRKAYRFLFISRKFCNGNFGGNEIDNGF-------------PDLDCGFDEDSNIS 66

Query: 67  EFGSRRWDNLSVRMGFLEDAKTDAEKALEVLKQDGPGFDTLLASDELQLKVSGALVRENL 126
           E  S   + +SVR  FLE A   A + L  L+ D  GF++    DEL ++VSG LVRE L
Sbjct: 67  ELRSIDREVISVRSRFLESANHSASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVL 126

Query: 127 RGIL----------------------------RHTASSYHMIMKIFAECEEFEAIWRLVD 186
            GIL                            RHT +SYH++MKIFAEC E++A+WRLVD
Sbjct: 127 VGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVD 186

Query: 187 EMTEKGYPVTARTFTLLTCTCGDAGFARKVVERFIKC----HSPCTSCYKTV-------- 221
           EM + G+P TARTF LL C+CG+AG A++ V +F+K     + P    Y  +        
Sbjct: 187 EMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVK 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141309.11.3e-7963.18pentatricopeptide repeat-containing protein At1g55630-like [Momordica charantia][more]
XP_023552266.11.4e-7663.32pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cucurbita... [more]
XP_023552269.11.4e-7663.32pentatricopeptide repeat-containing protein At1g55630-like isoform X4 [Cucurbita... [more]
XP_022922468.11.7e-7462.16pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita moschata][more]
KAG6576727.12.9e-7462.16Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
Q7X6A54.5e-3838.93Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana OX... [more]
Q9M1D83.0e-3436.82Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1CI856.4e-8063.18pentatricopeptide repeat-containing protein At1g55630-like OS=Momordica charanti... [more]
A0A6J1E6P68.1e-7562.16pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata... [more]
A0A6J1JDA61.8e-7462.16pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima O... [more]
A0A6J1FZ635.2e-7462.55pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata... [more]
A0A6J1HY313.4e-7362.16pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima O... [more]
Match NameE-valueIdentityDescription
AT1G55630.13.2e-3938.93Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G60050.12.1e-3536.82Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..97
NoneNo IPR availablePANTHERPTHR47942:SF3OS10G0506000 PROTEINcoord: 130..218
coord: 1..130
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 130..218
coord: 1..130
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 76..218
e-value: 3.6E-8
score: 35.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 133..165
e-value: 0.0018
score: 16.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..164
score: 8.900633

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036968.1Lag0036968.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding