Lag0036915 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036915
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein NRT1/ PTR FAMILY 4.5-like
Locationchr2: 2073535 .. 2074173 (-)
RNA-Seq ExpressionLag0036915
SyntenyLag0036915
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACAGATTCGAGTTTTCTTGACTTTCACCTGCCCACCCCATCAATTCCAGTAATCCCTCTACTCTTCATGCTTGTTCTCATCCCATTATACGACCGGGTTTTTGTTCCAATCGCCCGGAGAATCACAGTAATCCCAACGGGAATTCGACACCTCCAATGTGTTGGGGTTGGACTGGTGCTCTCAGCCATTTCCATGGCAGTTGCTGGAAAAATGTTGCAATCCAACACAACAAGGTGATTCCATTGCCACCAAGCCCCTTACATTAAGCAAATTTCGGTTGGGGTTCCAATATGCAATATTTGGAGCAGCAGATATGTTCACTTCTGATTGGACTGCTAGAGTTCTTTTACGAAGAGAGTTCAGCTGACATGAAATCCCTCAGCAGTCAGCACAGCAATATGTTGATACTTCACCAGCTCAGTGGTGGAGGAAGTGGAGAACAAGGTATAGGGGGCTGGCTGGCTAGTAATAACCTGAACAGAGATCATCTCAACTATTTTTACTGGCTACTGTCACTAATATTATAAACTTTGGAGTCTACTTGGTCTGTGCATCTTGGTATAGATACAAGACAGTGGAGTGGTGGTGATCAAGCAAGTTGGTGAAGTGAGGCCTCATAGGGAGAGCGTGTAA

mRNA sequence

ATGACCACAGATTCGAGTTTTCTTGACTTTCACCTGCCCACCCCATCAATTCCAGTAATCCCTCTACTCTTCATGCTTGTTCTCATCCCATTATACGACCGGGTTTTTGTTCCAATCGCCCGGAGAATCACAGTAATCCCAACGGGAATTCGACACCTCCAATGTGTTGGGGTTGGACTGGTGCTCTCAGCCATTTCCATGGCAGTTGCTGGAAAAATGTTGCAATCCAACACAACAAGCTCAGTGGTGGAGGAAGTGGAGAACAAGATACAAGACAGTGGAGTGGTGGTGATCAAGCAAGTTGGTGAAGTGAGGCCTCATAGGGAGAGCGTGTAA

Coding sequence (CDS)

ATGACCACAGATTCGAGTTTTCTTGACTTTCACCTGCCCACCCCATCAATTCCAGTAATCCCTCTACTCTTCATGCTTGTTCTCATCCCATTATACGACCGGGTTTTTGTTCCAATCGCCCGGAGAATCACAGTAATCCCAACGGGAATTCGACACCTCCAATGTGTTGGGGTTGGACTGGTGCTCTCAGCCATTTCCATGGCAGTTGCTGGAAAAATGTTGCAATCCAACACAACAAGCTCAGTGGTGGAGGAAGTGGAGAACAAGATACAAGACAGTGGAGTGGTGGTGATCAAGCAAGTTGGTGAAGTGAGGCCTCATAGGGAGAGCGTGTAA

Protein sequence

MTTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLVLSAISMAVAGKMLQSNTTSSVVEEVENKIQDSGVVVIKQVGEVRPHRESV
Homology
BLAST of Lag0036915 vs. NCBI nr
Match: XP_021663430.1 (protein NRT1/ PTR FAMILY 4.5-like [Hevea brasiliensis])

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 0

Query: 2   TTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLV 61
           T D+SF+ FH+P PSIPVIPLLFM VLIP+YDR+FVP+AR+IT IPTGIR+LQ +GVGLV
Sbjct: 360 TMDTSFIGFHIPGPSIPVIPLLFMFVLIPIYDRIFVPLARKITGIPTGIRYLQRIGVGLV 419

Query: 62  LSAISMAVAG 72
           LSAISMAVAG
Sbjct: 420 LSAISMAVAG 429

BLAST of Lag0036915 vs. NCBI nr
Match: XP_021612342.1 (protein NRT1/ PTR FAMILY 4.5-like [Manihot esculenta] >KAG8654721.1 hypothetical protein MANES_05G169400v8 [Manihot esculenta])

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 2   TTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLV 61
           T D+SF+ FH+P PSIPVIPLLFM VLIP+YDR+FVP+AR+IT IPTG+R+LQ +GVGLV
Sbjct: 361 TMDTSFIGFHIPGPSIPVIPLLFMFVLIPIYDRIFVPLARKITGIPTGVRYLQRIGVGLV 420

Query: 62  LSAISMAVAGKMLQSNTTSSVVE 85
           LSAISM VAG  ++++  S  VE
Sbjct: 421 LSAISMTVAG-FVETHRKSVAVE 442

BLAST of Lag0036915 vs. NCBI nr
Match: XP_012071720.2 (protein NRT1/ PTR FAMILY 4.5 [Jatropha curcas])

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-19
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 2   TTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLV 61
           T D++F  FH+P PSIPVIPLLF+ VL+P+YDR+FVP+AR+IT IPTGIR+LQ +GVGLV
Sbjct: 359 TMDTNFFGFHIPAPSIPVIPLLFVFVLVPIYDRIFVPLARKITGIPTGIRYLQRIGVGLV 418

Query: 62  LSAISMAVAG 72
           LSAISMAVAG
Sbjct: 419 LSAISMAVAG 428

BLAST of Lag0036915 vs. NCBI nr
Match: KDP38407.1 (hypothetical protein JCGZ_04332 [Jatropha curcas])

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-19
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 2   TTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLV 61
           T D++F  FH+P PSIPVIPLLF+ VL+P+YDR+FVP+AR+IT IPTGIR+LQ +GVGLV
Sbjct: 910 TMDTNFFGFHIPAPSIPVIPLLFVFVLVPIYDRIFVPLARKITGIPTGIRYLQRIGVGLV 969

Query: 62  LSAISMAVAG 72
           LSAISMAVAG
Sbjct: 970 LSAISMAVAG 979

BLAST of Lag0036915 vs. NCBI nr
Match: XP_025013301.1 (protein NRT1/ PTR FAMILY 4.5 isoform X1 [Ricinus communis])

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-19
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 0

Query: 2   TTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLV 61
           T D++ L FH+P PSIPVIPLLFM  LIP+YDR+FVP+ARR+T IPTG+RHLQ +GVGLV
Sbjct: 349 TMDTNLLGFHIPGPSIPVIPLLFMFALIPIYDRIFVPLARRLTGIPTGVRHLQRIGVGLV 408

Query: 62  LSAISMAVAG 72
           LSAISMAV+G
Sbjct: 409 LSAISMAVSG 418

BLAST of Lag0036915 vs. ExPASy Swiss-Prot
Match: Q8VYE4 (Protein NRT1/ PTR FAMILY 4.5 OS=Arabidopsis thaliana OX=3702 GN=NPF4.5 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 2   TTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLV 61
           T +   ++F++P+ S+PV P++FML+L P YD + +P AR++T    GI HLQ +GVGLV
Sbjct: 357 TMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLV 416

Query: 62  LSAISMAVA 71
           LS ++MAVA
Sbjct: 417 LSIVAMAVA 425

BLAST of Lag0036915 vs. ExPASy Swiss-Prot
Match: Q8H157 (Protein NRT1/ PTR FAMILY 4.6 OS=Arabidopsis thaliana OX=3702 GN=NPF4.6 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 29/59 (49.15%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 12  LPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLVLSAISMAVA 71
           +P  S+P+ P++F+++L P+YD + +P AR+ T   TG+ HLQ +GVGLVLS ++MAVA
Sbjct: 384 IPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVA 442

BLAST of Lag0036915 vs. ExPASy Swiss-Prot
Match: Q9FM20 (Protein NRT1/ PTR FAMILY 4.7 OS=Arabidopsis thaliana OX=3702 GN=NPF4.7 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-09
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 2   TTDSSFLDFHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLV 61
           T ++    F +P  ++PV P++FM++L P Y+ + +P+AR+ T   TGI HLQ +G GLV
Sbjct: 375 TMNTKLGSFTVPPAALPVFPVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLV 434

Query: 62  LSAISMAVA 71
           LS ++MAVA
Sbjct: 435 LSIVAMAVA 443

BLAST of Lag0036915 vs. ExPASy Swiss-Prot
Match: Q93VV5 (Protein NRT1/ PTR FAMILY 4.3 OS=Arabidopsis thaliana OX=3702 GN=NPF4.3 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 10  FHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLVLSAISMAV 69
           FH+P  S+  IP + ++ L+PLYD   VP AR++T   +GI  L  +G+GL LS  SM  
Sbjct: 386 FHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVS 445

Query: 70  AGKMLQSNTTSSVVE 85
           A  + +    SSV++
Sbjct: 446 AAMLEKKRRDSSVLD 460

BLAST of Lag0036915 vs. ExPASy Swiss-Prot
Match: Q8RX77 (Protein NRT1/ PTR FAMILY 2.13 OS=Arabidopsis thaliana OX=3702 GN=NPF2.13 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 10  FHLPTPSIPVIPLLFMLVLIPLYDRVFVPIARRITVIPTGIRHLQCVGVGLVLSAISMAV 69
           F +P  S+ VI LL + + +P YDRVFVP  RRIT   +GI  LQ +G G+V +  SM V
Sbjct: 400 FEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIV 459

Query: 70  AG 72
           AG
Sbjct: 460 AG 461

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021663430.15.9e-2078.57protein NRT1/ PTR FAMILY 4.5-like [Hevea brasiliensis][more]
XP_021612342.12.9e-1967.47protein NRT1/ PTR FAMILY 4.5-like [Manihot esculenta] >KAG8654721.1 hypothetical... [more]
XP_012071720.25.0e-1974.29protein NRT1/ PTR FAMILY 4.5 [Jatropha curcas][more]
KDP38407.15.0e-1974.29hypothetical protein JCGZ_04332 [Jatropha curcas][more]
XP_025013301.15.0e-1974.29protein NRT1/ PTR FAMILY 4.5 isoform X1 [Ricinus communis][more]
Match NameE-valueIdentityDescription
Q8VYE41.4e-1149.28Protein NRT1/ PTR FAMILY 4.5 OS=Arabidopsis thaliana OX=3702 GN=NPF4.5 PE=2 SV=1[more]
Q8H1571.7e-0949.15Protein NRT1/ PTR FAMILY 4.6 OS=Arabidopsis thaliana OX=3702 GN=NPF4.6 PE=1 SV=1[more]
Q9FM203.7e-0944.93Protein NRT1/ PTR FAMILY 4.7 OS=Arabidopsis thaliana OX=3702 GN=NPF4.7 PE=2 SV=2[more]
Q93VV51.0e-0640.00Protein NRT1/ PTR FAMILY 4.3 OS=Arabidopsis thaliana OX=3702 GN=NPF4.3 PE=2 SV=1[more]
Q8RX771.3e-0650.00Protein NRT1/ PTR FAMILY 2.13 OS=Arabidopsis thaliana OX=3702 GN=NPF2.13 PE=1 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000109Proton-dependent oligopeptide transporter familyPFAMPF00854PTR2coord: 5..80
e-value: 1.8E-11
score: 43.5
IPR000109Proton-dependent oligopeptide transporter familyPANTHERPTHR11654OLIGOPEPTIDE TRANSPORTER-RELATEDcoord: 2..75
IPR036259MFS transporter superfamilyGENE3D1.20.1250.20MFS general substrate transporter like domainscoord: 1..101
e-value: 1.9E-16
score: 61.3
NoneNo IPR availablePANTHERPTHR11654:SF110PEPTIDE/NITRATE TRANSPORTERcoord: 2..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036915.1Lag0036915.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0022857 transmembrane transporter activity