Lag0036829 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036829
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	HMA domain-containing protein
Location	chr2: 1451836 .. 1453637 (-)
RNA-Seq Expression	Lag0036829
Synteny	Lag0036829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCCACCGGAATCTCATACACACTGACAAACTGCAGTACTTCTACTTTCGTTTGCTTCTGTACAACTTCCATCGCCCTCGATCCACCAAAAAACACGGTCACTGTCGTCGGCGAAGCTGATCCTGTTAAGGTCATCAAGAAGGTAAGAAAATTCAGGAAGTGTACTGCAATTTTGCGCGTAGGGCCTGCAAAAGAGGAGAAGATAAAGGTGAGAAGAGGGATGGTAATTAAGAACGAGAGCAAAGATATCATAAGTCATCTGCCCAAGACATGCCACGTGCGATATCTGGTATGTTATCACTGAAGATGCTTATAGTTACTGTTCCATTATGTGATTAGGAAATGTGTTTAATGAATAATTCTGTCCTTGTAAAAGTAATTTCCAAAGGTGTGATCGGTCCTTTATTTGGATAAGTTTGAGAAAAATAACTTTGAATCTCTTGTCAATTACCATTAAGTTTTTGACAAGTAGGAGAATTGATGCAAAAAAAATAGAGTGAAAAAAATATACTTTTTTTTTCTTTTAAATAACAAATAGCTACCAAACCTGATGAGTAGAAACATTCATATTGACTAGTGTGAGAATAGAAGTATTGGTCTAATTAATTAAGGCTCATTGCTACTAGCTAAGCTATTAAGGATTTATGAGCTCCCAAAATAAATAGTTATATATTCATAGTTTGTCATGACTTTTTTGGGGCACTTTCCATGTCATACAATGCCTTACTCTATAACTTTGGTTTGAATCTTATACTTCTATGAAATATATAATTATATCTATTTTTCATTGAAGTGTTTCAAACATCCAAACTACTAATCGAAATATAATAGAAATCCAAAATAAATTATTAATTTTACAATCTTAGAAACTACAAAATCCAGTTAATATTTCGGGTTGCACCCAGAATTAGTCTTAAACTTCTCTCTATTCTTCAACCAAAAGAATGACTCAAAAGTCAATCAAAACAAACTCATGGCTCAATAATATCACAAGGCTAATTTATCATATTTATAAATAATTTAAACTTTGGATTTCTATATTTATTGATGAAAAAGATGCTTAACAAACACTATAAAAAAAAAAAAGAAAGATGCTTAACAAGCTTTAATAATAAACAGACATTGAAAAAAGAAACATCAGAAAGTATAGGAACAAAATCAATATAAAAGTGAAGTATAAAGATTAAGAATGTATTTAATCTATCTATTTATCGAATAATCTTAATTTTCAAAATGAACAAAACTTGCCTGCATACCGGTACGTAGAGATCTCCCTACATACCCCATTAAAATCCCCATTAAAATCTTGACAAGTAAGAAAGAGGAAGGGAGAAAATGAGAATTTTTTGTTGTCTCTCTTAGTTGTCAATGTTTGAATGGTAGTATGTAGGAGATCCCTGCATACCGACATACCGGCATGCAGACAAGTTTTTTCATTTCAACATATGCTCAACGAACAGTCCAGATATTTTTTTTTTCAAAAAAAAAAATCCAGATTTTTGTTTTTCAAGAACGATGTGGGGCCATCTCCCTCATCACTTCAGATATAGTGAAATGGGCCCTCAAATAAATGGGCTTGGACGGTTCAATGCAGAAATCCCTTCCATAACGATCTCAGTCAAAAGGTTGGTTTGGTAACCTCGAGTCACCCTACATATTATTGAACTAAAAAAAAAACCCCACAACCAAAAGGTTTGTCCATTCGCATAGGGCTCTGTTCTTGTACGCCGCGGGGTTCCAATGCGTGGGCTCTTCAATCGTAACACAATTTCTAACAGCTCCGCGCCGAGCCACTGA

mRNA sequence

ATGAGATCCACCGGAATCTCATACACACTGACAAACTGCAGTACTTCTACTTTCGTTTGCTTCTGTACAACTTCCATCGCCCTCGATCCACCAAAAAACACGGTCACTGTCGTCGGCGAAGCTGATCCTGTTAAGGTCATCAAGAAGGTAAGAAAATTCAGGAAGTGTACTGCAATTTTGCGCGTAGGGCCTGCAAAAGAGGAGAAGATAAAGGTGAGAAGAGGGATGGTAATTAAGAACGAGAGCAAAGATATCATAAGTCATCTGCCCAAGACATGCCACGTGCGATATCTGGGCTCTGTTCTTGTACGCCGCGGGGTTCCAATGCGTGGGCTCTTCAATCGTAACACAATTTCTAACAGCTCCGCGCCGAGCCACTGA

Coding sequence (CDS)

ATGAGATCCACCGGAATCTCATACACACTGACAAACTGCAGTACTTCTACTTTCGTTTGCTTCTGTACAACTTCCATCGCCCTCGATCCACCAAAAAACACGGTCACTGTCGTCGGCGAAGCTGATCCTGTTAAGGTCATCAAGAAGGTAAGAAAATTCAGGAAGTGTACTGCAATTTTGCGCGTAGGGCCTGCAAAAGAGGAGAAGATAAAGGTGAGAAGAGGGATGGTAATTAAGAACGAGAGCAAAGATATCATAAGTCATCTGCCCAAGACATGCCACGTGCGATATCTGGGCTCTGTTCTTGTACGCCGCGGGGTTCCAATGCGTGGGCTCTTCAATCGTAACACAATTTCTAACAGCTCCGCGCCGAGCCACTGA

Protein sequence

MRSTGISYTLTNCSTSTFVCFCTTSIALDPPKNTVTVVGEADPVKVIKKVRKFRKCTAILRVGPAKEEKIKVRRGMVIKNESKDIISHLPKTCHVRYLGSVLVRRGVPMRGLFNRNTISNSSAPSH

Homology

[Close]

BLAST of Lag0036829 vs. NCBI nr
Match: XP_022142242.1 (heavy metal-associated isoprenylated plant protein 43-like [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 24 TSIALDPPKNTVTVVGEADPVKVIKKVRKFRKCTAILRVGPAKEEKIKVRRGMVIKNESK 83
          TSIALDPPKNTVTV+GEADPVKVIKKVRKFRK  AIL VGPAKEEK   +     K+ESK
Sbjct: 31 TSIALDPPKNTVTVIGEADPVKVIKKVRKFRKSAAILSVGPAKEEKKDEK-----KSESK 90

Query: 84 DIISHLPKTCH 95
          D+I H PKTCH
Sbjct: 91 DVICHFPKTCH 96

[Close]

BLAST of Lag0036829 vs. NCBI nr
Match: KAG7024186.1 (hypothetical protein SDJN02_13000, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 30 PPKNTVTVVGEADPVKVIKKVRKFRKCTAILRVGPAKEEKIKVRRGMVIKNESKDIISHL 89
          PPKNT+TV+GEADPVKVIKKVRKFRK  AIL VGPAKEEK   + G   K ESKD+ISHL
Sbjct: 30 PPKNTITVIGEADPVKVIKKVRKFRKYAAILSVGPAKEEK---KDG---KKESKDVISHL 87

Query: 90 PKTC 94
          PKTC
Sbjct: 90 PKTC 87

[Close]

BLAST of Lag0036829 vs. NCBI nr
Match: XP_030932987.1 (heavy metal-associated isoprenylated plant protein 43-like [Quercus lobata])

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-13
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 24  TSIALDPPKNTVTVVGEADPVKVIKKVRKFRKCTAILRVGPAKEEKIKVRRGMVIKNESK 83
           TSI LDP KNTVTV+GEADPVK+I KVRK+R+  A++ VGPAKEEK         K+E K
Sbjct: 82  TSIVLDPSKNTVTVIGEADPVKIINKVRKYRQSAAVVSVGPAKEEK---------KDEKK 141

Query: 84  DIISHLPKTC 94
           D++S  PKTC
Sbjct: 142 DVVSFTPKTC 142

[Close]

BLAST of Lag0036829 vs. NCBI nr
Match: XP_017981658.1 (PREDICTED: uncharacterized protein LOC108663126 [Theobroma cacao])

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-12
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 24  TSIALDPPKNTVTVVGEADPVKVIKKVRKFRKCTAILRVGPAKEEKIKVRRGMVIKNESK 83
           TSI LDP KNTVTV GEADPVK+IKKVRKFRK  +I+ V  AK+EK K  + +  K++ +
Sbjct: 31  TSIVLDPSKNTVTVTGEADPVKIIKKVRKFRKHASIVSVAAAKDEK-KDEKKVEKKDDRR 90

Query: 84  DIISHLPKTCH 95
           D++ + PKTCH
Sbjct: 91  DLVVYTPKTCH 100

[Close]

BLAST of Lag0036829 vs. NCBI nr
Match: XP_042991482.1 (heavy metal-associated isoprenylated plant protein 2-like isoform X1 [Carya illinoinensis])

HSP 1 Score: 81.6 bits (200), Expect = 5.2e-12
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 24  TSIALDPPKNTVTVVGEADPVKVIKKVRKFRKCTAILRVGPAKEEKIKVRRGMVIKNESK 83
           TSI LDP KNTVTV+GEADPV++IK+VRKFRK   ++ VGPAKEEK   ++  V+K   +
Sbjct: 66  TSIVLDPSKNTVTVIGEADPVRIIKQVRKFRKTATVVSVGPAKEEKKDEKKDSVVK---E 125

Query: 84  DIISHLPKTC 94
            +++ +PKTC
Sbjct: 126 SVVTCVPKTC 132

[Close]

BLAST of Lag0036829 vs. ExPASy Swiss-Prot
Match: O03982 (Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX=3702 GN=HIPP39 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.4e-04
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 25 SIALDPPKNTVTVVGEADPVKVIKKVRKFRKCTAILRVGPAKE 68
          SIA+D  +  +TV+G  DPV V+ K+RK+   T I+ VGPAKE
Sbjct: 31 SIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKE 73

The following BLAST results are available for this feature:

BLAST of Lag0036829 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142242.1	1.3e-18	76.06	heavy metal-associated isoprenylated plant protein 43-like [Momordica charantia]	[more]
KAG7024186.1	2.9e-15	76.56	hypothetical protein SDJN02_13000, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_030932987.1	2.7e-13	61.43	heavy metal-associated isoprenylated plant protein 43-like [Quercus lobata]	[more]
XP_017981658.1	4.0e-12	59.15	PREDICTED: uncharacterized protein LOC108663126 [Theobroma cacao]	[more]
XP_042991482.1	5.2e-12	57.14	heavy metal-associated isoprenylated plant protein 2-like isoform X1 [Carya illi...	[more]

BLAST of Lag0036829 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O03982	5.4e-04	51.16	Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 19..68 e-value: 1.5E-8 score: 36.7
None	No IPR available	PANTHER	PTHR45811:SF27	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3-LIKE	coord: 23..95
None	No IPR available	PANTHER	PTHR45811	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 23..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036829.1	Lag0036829.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding