Lag0036780 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036780
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transmembrane protein
Location	chr2: 1097225 .. 1097602 (+)
RNA-Seq Expression	Lag0036780
Synteny	Lag0036780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGGGTTGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCCTCCATGTCTCTCCCGCCAATGCCGCTGCTCGCCTTTCTCGGCGTCGTCATTCTTCTGCTTGCGTTGCAATCGCAGCAGATGGTGTTAGACTTCAAGGTATTCCTTTTGGCTTTGCCATTTTTGCTGATCCTTGTTGCAAATTCCATTGCTGTGTCTGGTACAGTTGGGTCTACTGCCATGAGAACCAAGAGCAGGTCGGCTCAGGAGGCTGAAAAGACCTCACCTTGGGGTGCGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGCTCTTACTTTCGCTCCAAGTGGTCACCTCCATCTTAA

mRNA sequence

ATGAGTTGGGTTGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCCTCCATGTCTCTCCCGCCAATGCCGCTGCTCGCCTTTCTCGGCGTCGTCATTCTTCTGCTTGCGTTGCAATCGCAGCAGATGGTGTTAGACTTCAAGGTATTCCTTTTGGCTTTGCCATTTTTGCTGATCCTTGTTGCAAATTCCATTGCTGTGTCTGGTACAGTTGGGTCTACTGCCATGAGAACCAAGAGCAGGTCGGCTCAGGAGGCTGAAAAGACCTCACCTTGGGGTGCGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGCTCTTACTTTCGCTCCAAGTGGTCACCTCCATCTTAA

Coding sequence (CDS)

ATGAGTTGGGTTGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGGCTGAGAGAACAATGGCCTCCATGTCTCTCCCGCCAATGCCGCTGCTCGCCTTTCTCGGCGTCGTCATTCTTCTGCTTGCGTTGCAATCGCAGCAGATGGTGTTAGACTTCAAGGTATTCCTTTTGGCTTTGCCATTTTTGCTGATCCTTGTTGCAAATTCCATTGCTGTGTCTGGTACAGTTGGGTCTACTGCCATGAGAACCAAGAGCAGGTCGGCTCAGGAGGCTGAAAAGACCTCACCTTGGGGTGCGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTGTGGAACCGCTCTTACTTTCGCTCCAAGTGGTCACCTCCATCTTAA

Protein sequence

MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVILLLALQSQQMVLDFKVFLLALPFLLILVANSIAVSGTVGSTAMRTKSRSAQEAEKTSPWGAAVLLFLLLILLWNRSYFRSKWSPPS

Homology

[Close]

BLAST of Lag0036780 vs. NCBI nr
Match: KAA0063287.1 (hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.4e-54
Identity = 112/125 (89.60%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVILLLALQSQQMVLDFKVFLLAL 60
           MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVV+LLL+LQSQQMVLDFK+ LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLILVANSIAVSGTVGSTAMRTKSRSAQEAEKTSPWGAAVLLFLLLILLWNRSYFRSK 120
           PFL+I  ANS+AVSGTVGS AMRTKSRSAQEAE+TSPWGAAVLLFLLLILLWNR YFRSK
Sbjct: 61  PFLIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

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BLAST of Lag0036780 vs. NCBI nr
Match: KGN60038.1 (hypothetical protein Csa_001668 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 3.2e-54
Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVILLLALQSQQMVLDFKVFLLAL 60
           MSWVVEERGPEWKYGW ER M+SMSLPPMPLLAFLGVV+LLL+LQSQQMVLDFK+ LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLILVANSIAVSGTVGSTAMRTKSRSAQEAEKTSPWGAAVLLFLLLILLWNRSYFRSK 120
           PFL+I VANS+AVSGTVGS +MRTKSRSAQEAE+TSPWGAAVLLFLLLILLWNR YFRSK
Sbjct: 61  PFLMIFVANSVAVSGTVGSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lag0036780 vs. NCBI nr
Match: TYK31488.1 (hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 7.1e-54
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVILLLALQSQQMVLDFKVFLLAL 60
           MSWVVEERGPEWKYGW ER MASMSLPPMPLLAFLGVV+LLL+LQSQQMVLDFK+ LLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFLLILVANSIAVSGTVGSTAMRTKSRSAQEAEKTSPWGAAVLLFLLLILLWNRSYFRSK 120
           PF +I  ANS+AVSGTVGS AMRTKSRSAQEAE+TSPWGAAVLLFLLLILLWNR YFRSK
Sbjct: 61  PFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of Lag0036780 vs. NCBI nr
Match: XP_022940699.1 (uncharacterized protein LOC111446211 [Cucurbita moschata])

HSP 1 Score: 188.0 bits (476), Expect = 5.1e-44
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVILLLALQSQQMVLDFKVFLLAL 60
           MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLL+LQSQ+M LDFK+FLLAL
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMALDFKLFLLAL 60

Query: 61  PFLLILVANSIAVSGTVGSTAMRTKSRSAQEAEKTSPWGAAVLLFLLLILLWNR 115
           PFLLI +ANS+ VSG+V STAMRTK+RSAQEAEKTSPWGAAVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTAMRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

[Close]

BLAST of Lag0036780 vs. NCBI nr
Match: KAG7037914.1 (hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 96/114 (84.21%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MSWVVEERGPEWKYGWAERTMASMSLPPMPLLAFLGVVILLLALQSQQMVLDFKVFLLAL 60
           MSW  EER PEWKYGWAERT+ASMS PPMPLLAFLGVV+LLL+LQSQ+M  DFK+FLLAL
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMAFDFKLFLLAL 60

Query: 61  PFLLILVANSIAVSGTVGSTAMRTKSRSAQEAEKTSPWGAAVLLFLLLILLWNR 115
           PFLLI +ANS+ VSG+V STAMRTK+RSAQEAEKTSPWGAAVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTAMRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

The following BLAST results are available for this feature:

BLAST of Lag0036780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063287.1	2.4e-54	89.60	hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa]	[more]
KGN60038.1	3.2e-54	88.80	hypothetical protein Csa_001668 [Cucumis sativus]	[more]
TYK31488.1	7.1e-54	88.80	hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa]	[more]
XP_022940699.1	5.1e-44	85.09	uncharacterized protein LOC111446211 [Cucurbita moschata]	[more]
KAG7037914.1	1.5e-43	84.21	hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0036780 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF26	PROTEIN, PUTATIVE-RELATED	coord: 1..124
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036780.1	Lag0036780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane