Lag0036692 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0036692
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionshort-chain dehydrogenase/reductase family 42E member 1-like
Locationchr2: 421431 .. 422127 (-)
RNA-Seq ExpressionLag0036692
SyntenyLag0036692
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCTGCTGAGATTTACAAGGTTTGTTTATTGTTTTCTTTTTTAATGGTCGTATCTGCAAACATGCAAATGGTCTTACGGAATGTTTGGACATCCAGTTGCAACCAAATTTTGACCAACGATTTCACAACCAAGAATTCTCTCCTTGGCCATCCCAATAATGTTCCTTGATAATATGGAGAATGCTCCATGCTGAATAAATATACCTTAATCAATTCCTCTCCAAATCCTAATTAGTTGTTTGTATATATTGATGCAGGTCGGCGTCAACAATAATTTCTCGTATCTTAAAGCCAAGGAGGAGCTTGGCTATGTTCCAATGGTGAGTCCAAAGGAGGGCATGGCTGCGACCATCTCATATTGGCAGGAGAGGAAGAGGAAGAGTCTTGATGGGCCAACAATATATGTCTGGCTTTTTTGTGTTGTCGGAATGAACATCCTGTTTTGTGCTGCCTTCCTTCCAGACGTTGGACCTGTTCCATTTTTCAAAGCTATCAGCCTTTTCTTCTTCAGGTCAATTCAAGTGGTGAGAATGGTGTTTCTTATAGCCTTTCTACTGCATGTTGGTGAGGGTATTTATGCATGGTTCTTAGCAAGAAAGGTGGATCCTGCTAACTCAAGGGGATGGTTTTGGCAGACTTTTGCTCTAGGCTTCTTTTCCTTGCGCTTCTTGTTGAAAAGAGCAAGGAGTTAA

mRNA sequence

ATGCTTCCTGCTGAGATTTACAAGGTCGGCGTCAACAATAATTTCTCGTATCTTAAAGCCAAGGAGGAGCTTGGCTATGTTCCAATGGTGAGTCCAAAGGAGGGCATGGCTGCGACCATCTCATATTGGCAGGAGAGGAAGAGGAAGAGTCTTGATGGGCCAACAATATATGTCTGGCTTTTTTGTGTTGTCGGAATGAACATCCTGTTTTGTGCTGCCTTCCTTCCAGACGTTGGACCTGTTCCATTTTTCAAAGCTATCAGCCTTTTCTTCTTCAGGTCAATTCAAGTGGTGAGAATGGTGTTTCTTATAGCCTTTCTACTGCATGTTGGTGAGGGTATTTATGCATGGTTCTTAGCAAGAAAGGTGGATCCTGCTAACTCAAGGGGATGGTTTTGGCAGACTTTTGCTCTAGGCTTCTTTTCCTTGCGCTTCTTGTTGAAAAGAGCAAGGAGTTAA

Coding sequence (CDS)

ATGCTTCCTGCTGAGATTTACAAGGTCGGCGTCAACAATAATTTCTCGTATCTTAAAGCCAAGGAGGAGCTTGGCTATGTTCCAATGGTGAGTCCAAAGGAGGGCATGGCTGCGACCATCTCATATTGGCAGGAGAGGAAGAGGAAGAGTCTTGATGGGCCAACAATATATGTCTGGCTTTTTTGTGTTGTCGGAATGAACATCCTGTTTTGTGCTGCCTTCCTTCCAGACGTTGGACCTGTTCCATTTTTCAAAGCTATCAGCCTTTTCTTCTTCAGGTCAATTCAAGTGGTGAGAATGGTGTTTCTTATAGCCTTTCTACTGCATGTTGGTGAGGGTATTTATGCATGGTTCTTAGCAAGAAAGGTGGATCCTGCTAACTCAAGGGGATGGTTTTGGCAGACTTTTGCTCTAGGCTTCTTTTCCTTGCGCTTCTTGTTGAAAAGAGCAAGGAGTTAA

Protein sequence

MLPAEIYKVGVNNNFSYLKAKEELGYVPMVSPKEGMAATISYWQERKRKSLDGPTIYVWLFCVVGMNILFCAAFLPDVGPVPFFKAISLFFFRSIQVVRMVFLIAFLLHVGEGIYAWFLARKVDPANSRGWFWQTFALGFFSLRFLLKRARS
Homology
[Close]
BLAST of Lag0036692 vs. NCBI nr
Match: XP_022937306.1 (short-chain dehydrogenase/reductase family 42E member 1-like [Cucurbita moschata])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 141/152 (92.76%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MLPAEIYKVGVNNNFSYLKAKEELGYVPMVSPKEGMAATISYWQERKRKSLDGPTIYVWL 60
           MLP EIYKVGV+N FSYLKA+EELGYVPMV+PKEGMAATISYWQERKRKSLDGPTIY WL
Sbjct: 327 MLPPEIYKVGVSNYFSYLKAREELGYVPMVTPKEGMAATISYWQERKRKSLDGPTIYAWL 386

Query: 61  FCVVGMNILFCAAFLPDVGPVPFFKAISLFFFRSIQVVRMVFLIAFLLHVGEGIYAWFLA 120
           FCVVGM+I+FCAAFLPDVGPVPFFK ISLFFFRSIQVVRMVFLIAFLLHVGEG YAWFLA
Sbjct: 387 FCVVGMSIMFCAAFLPDVGPVPFFKGISLFFFRSIQVVRMVFLIAFLLHVGEGTYAWFLA 446

Query: 121 RKVDPANSRGWFWQTFALGFFSLRFLLKRARS 153
           RKVDPANSRGWFWQTFALGFFSLR LLKRARS
Sbjct: 447 RKVDPANSRGWFWQTFALGFFSLRLLLKRARS 478

[Close]
BLAST of Lag0036692 vs. NCBI nr
Match: XP_023536108.1 (short-chain dehydrogenase/reductase family 42E member 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 141/152 (92.76%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MLPAEIYKVGVNNNFSYLKAKEELGYVPMVSPKEGMAATISYWQERKRKSLDGPTIYVWL 60
           MLP EIYKVGV+N FSYLKA+EELGYVPMV+PKEGMAATISYWQERKRKSLDGPTIY WL
Sbjct: 327 MLPPEIYKVGVSNYFSYLKAREELGYVPMVTPKEGMAATISYWQERKRKSLDGPTIYAWL 386

Query: 61  FCVVGMNILFCAAFLPDVGPVPFFKAISLFFFRSIQVVRMVFLIAFLLHVGEGIYAWFLA 120
           FCVVGM+I+FCAAFLPDVGPVPFFK ISLFFFRSIQVVRMVFLIAFLLHVGEG YAWFLA
Sbjct: 387 FCVVGMSIMFCAAFLPDVGPVPFFKGISLFFFRSIQVVRMVFLIAFLLHVGEGTYAWFLA 446

Query: 121 RKVDPANSRGWFWQTFALGFFSLRFLLKRARS 153
           RKVDPANSRGWFWQTFALGFFSLR LLKRARS
Sbjct: 447 RKVDPANSRGWFWQTFALGFFSLRLLLKRARS 478

[Close]
BLAST of Lag0036692 vs. NCBI nr
Match: KAG7024083.1 (Short-chain dehydrogenase/reductase family 42E member 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 3.0e-75
Identity = 140/152 (92.11%), Postives = 145/152 (95.39%), Query Frame = 0 

Query: 1   MLPAEIYKVGVNNNFSYLKAKEELGYVPMVSPKEGMAATISYWQERKRKSLDGPTIYVWL 60
           MLP EIYKVGV+N FSYLKA+EELGYVPMV+PKEGMAATISYWQERKRKSLDGPTIY WL
Sbjct: 340 MLPPEIYKVGVSNYFSYLKAREELGYVPMVTPKEGMAATISYWQERKRKSLDGPTIYAWL 399

Query: 61  FCVVGMNILFCAAFLPDVGPVPFFKAISLFFFRSIQVVRMVFLIAFLLHVGEGIYAWFLA 120
           FCVVGM+I+FC AFLPDVGPVPFFK ISLFFFRSIQVVRMVFLIAFLLHVGEG YAWFLA
Sbjct: 400 FCVVGMSIMFCGAFLPDVGPVPFFKGISLFFFRSIQVVRMVFLIAFLLHVGEGTYAWFLA 459

Query: 121 RKVDPANSRGWFWQTFALGFFSLRFLLKRARS 153
           RKVDPANSRGWFWQTFALGFFSLR LLKRARS
Sbjct: 460 RKVDPANSRGWFWQTFALGFFSLRLLLKRARS 491

[Close]
BLAST of Lag0036692 vs. NCBI nr
Match: XP_022975358.1 (short-chain dehydrogenase/reductase family 42E member 1-like [Cucurbita maxima])

HSP 1 Score: 292.0 bits (746), Expect = 3.0e-75
Identity = 140/152 (92.11%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MLPAEIYKVGVNNNFSYLKAKEELGYVPMVSPKEGMAATISYWQERKRKSLDGPTIYVWL 60
           MLP EIYKVGV+N FSYLKA+EELGYVPMV+PKEGMAATISYWQ+RKRKSLDGPTIY WL
Sbjct: 327 MLPPEIYKVGVSNYFSYLKAREELGYVPMVTPKEGMAATISYWQKRKRKSLDGPTIYAWL 386

Query: 61  FCVVGMNILFCAAFLPDVGPVPFFKAISLFFFRSIQVVRMVFLIAFLLHVGEGIYAWFLA 120
           FCVVGM+I+FCAAFLPDVGPVPFFK ISLFFFRSIQVVRMVFLIAFLLHVGEG YAWFLA
Sbjct: 387 FCVVGMSIMFCAAFLPDVGPVPFFKGISLFFFRSIQVVRMVFLIAFLLHVGEGTYAWFLA 446

Query: 121 RKVDPANSRGWFWQTFALGFFSLRFLLKRARS 153
           RKVDPANSRGWFWQTFALGFFSLR LLKRARS
Sbjct: 447 RKVDPANSRGWFWQTFALGFFSLRLLLKRARS 478

[Close]
BLAST of Lag0036692 vs. NCBI nr
Match: XP_004145560.1 (short-chain dehydrogenase/reductase family 42E member 1 [Cucumis sativus] >KGN55539.1 hypothetical protein Csa_012827 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 138/152 (90.79%), Postives = 148/152 (97.37%), Query Frame = 0 

Query: 1   MLPAEIYKVGVNNNFSYLKAKEELGYVPMVSPKEGMAATISYWQERKRKSLDGPTIYVWL 60
           MLPAEIYKVGV+N FSYLKAKEELGY P+V+PKEGMAATISYWQER+RKSLDGPTIYVWL
Sbjct: 327 MLPAEIYKVGVSNYFSYLKAKEELGYAPIVTPKEGMAATISYWQERERKSLDGPTIYVWL 386

Query: 61  FCVVGMNILFCAAFLPDVGPVPFFKAISLFFFRSIQVVRMVFLIAFLLHVGEGIYAWFLA 120
           FC+VGM+ILFCAAFLPDVGPVPFFKAISLFFFRSI+V+RMVFL+A LLHVGE IYAWFLA
Sbjct: 387 FCLVGMSILFCAAFLPDVGPVPFFKAISLFFFRSIKVLRMVFLVALLLHVGEAIYAWFLA 446

Query: 121 RKVDPANSRGWFWQTFALGFFSLRFLLKRARS 153
           RKVDPANSRGWFWQTFALGFFSLRFLLKRAR+
Sbjct: 447 RKVDPANSRGWFWQTFALGFFSLRFLLKRARN 478

The following BLAST results are available for this feature:
BLAST of Lag0036692 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937306.11.0e-7592.76short-chain dehydrogenase/reductase family 42E member 1-like [Cucurbita moschata... [more]
XP_023536108.11.0e-7592.76short-chain dehydrogenase/reductase family 42E member 1-like [Cucurbita pepo sub... [more]
KAG7024083.13.0e-7592.11Short-chain dehydrogenase/reductase family 42E member 1 [Cucurbita argyrosperma ... [more]
XP_022975358.13.0e-7592.11short-chain dehydrogenase/reductase family 42E member 1-like [Cucurbita maxima][more]
XP_004145560.11.2e-7490.79short-chain dehydrogenase/reductase family 42E member 1 [Cucumis sativus] >KGN55... [more]
BLAST of Lag0036692 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028110Transmembrane protein 254PFAMPF14934DUF4499coord: 61..147
e-value: 7.5E-28
score: 96.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0036692.1Lag0036692.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006694 steroid biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity