Lag0036671 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036671
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr2: 300594 .. 301397 (+)
RNA-Seq Expression	Lag0036671
Synteny	Lag0036671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCCTGGAAAAAGAGAGCTCTTATTAAAAATCTTATATCCTCTCACAACCCAGCTTTGGTGATCCTCCAAGAGACTAAGATGGTTGGTATTGACAGAAAGATTATCAAATCCCTATGGAGTTCGGGGAATATTGCTTGGTCCTCTATAGATGTTGATGGTGCTTCTGGGGGTATTGTGATCCTTTGGAATGAATCTTTTTTTTATGTCAAGGAGATCGTGGAAGGTATGTTCTCTCTATCCCTACAACTATCATTAGCTGATGGCTTCACCTTCTGGATTACAGGAATTTATGGGCCTAATTCCTCCAAAGATAGGCGTTTATTTTGGGCAAAACTAATGGATCTCCAAGCTTTATGTCTTCCTAATTGGATATTGGGTGGTGATTTCAATGTTACACGATGGACATGGGAGAAATCATCATATTCGGCCCCAACTCGAGCCATGAGGAAATTCAATAGATTTATTGATGACAACGAGCTACTTGACATCCCTTTATCCAACGGAAAATTTTCTTGGTCCAGCTTCAGGCCTAATCCCACCATGACCCTTATCGACAGGTTCCTCATAACTGATGGCATAATCTCCAAATTTTCCACTGCAACAACCCGTAGATTGGAACGTGTTACTTCTGATCACTTCCCAATCTGTCTAAATCTGGGAAAAGAAAAATGGGGACCGGCCCCTTTCAAGCTCAATAATGCATGGCTCTCGCATCATACTTTCCTCACCACGGTTGAATCATGGTGGAAGAACACACTTTCTCAAGGATGGTCGGGACAGGATTCATTCATAAACTAA

mRNA sequence

ATGGGCTCCTGGAAAAAGAGAGCTCTTATTAAAAATCTTATATCCTCTCACAACCCAGCTTTGGTGATCCTCCAAGAGACTAAGATGGTTGGTATTGACAGAAAGATTATCAAATCCCTATGGAGTTCGGGGAATATTGCTTGGTCCTCTATAGATGTTGATGGTGCTTCTGGGGGTATTGTGATCCTTTGGAATGAATCTTTTTTTTATGTCAAGGAGATCGTGGAAGGTATGTTCTCTCTATCCCTACAACTATCATTAGCTGATGGCTTCACCTTCTGGATTACAGGAATTTATGGGCCTAATTCCTCCAAAGATAGGCGTTTATTTTGGGCAAAACTAATGGATCTCCAAGCTTTATGTCTTCCTAATTGGATATTGGGTGGTGATTTCAATGTTACACGATGGACATGGGAGAAATCATCATATTCGGCCCCAACTCGAGCCATGAGGAAATTCAATAGATTTATTGATGACAACGAGCTACTTGACATCCCTTTATCCAACGGAAAATTTTCTTGGTCCAGCTTCAGGCCTAATCCCACCATGACCCTTATCGACAGGTTCCTCATAACTGATGGCATAATCTCCAAATTTTCCACTGCAACAACCCGTAGATTGGAACGTGTTACTTCTGATCACTTCCCAATCTGTCTAAATCTGGGAAAAGAAAAATGGGGACCGGCCCCTTTCAAGCTCAATAATGCATGGCTCTCGCATCATACTTTCCTCACCACGGTTGAATCATGGTGGAAGAACACACTTTCTCAAGGATGGTCGGGACAGGATTCATTCATAAACTAA

Coding sequence (CDS)

ATGGGCTCCTGGAAAAAGAGAGCTCTTATTAAAAATCTTATATCCTCTCACAACCCAGCTTTGGTGATCCTCCAAGAGACTAAGATGGTTGGTATTGACAGAAAGATTATCAAATCCCTATGGAGTTCGGGGAATATTGCTTGGTCCTCTATAGATGTTGATGGTGCTTCTGGGGGTATTGTGATCCTTTGGAATGAATCTTTTTTTTATGTCAAGGAGATCGTGGAAGGTATGTTCTCTCTATCCCTACAACTATCATTAGCTGATGGCTTCACCTTCTGGATTACAGGAATTTATGGGCCTAATTCCTCCAAAGATAGGCGTTTATTTTGGGCAAAACTAATGGATCTCCAAGCTTTATGTCTTCCTAATTGGATATTGGGTGGTGATTTCAATGTTACACGATGGACATGGGAGAAATCATCATATTCGGCCCCAACTCGAGCCATGAGGAAATTCAATAGATTTATTGATGACAACGAGCTACTTGACATCCCTTTATCCAACGGAAAATTTTCTTGGTCCAGCTTCAGGCCTAATCCCACCATGACCCTTATCGACAGGTTCCTCATAACTGATGGCATAATCTCCAAATTTTCCACTGCAACAACCCGTAGATTGGAACGTGTTACTTCTGATCACTTCCCAATCTGTCTAAATCTGGGAAAAGAAAAATGGGGACCGGCCCCTTTCAAGCTCAATAATGCATGGCTCTCGCATCATACTTTCCTCACCACGGTTGAATCATGGTGGAAGAACACACTTTCTCAAGGATGGTCGGGACAGGATTCATTCATAAACTAA

Protein sequence

MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGIVILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQALCLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPNPTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSHHTFLTTVESWWKNTLSQGWSGQDSFIN

Homology

[Close]

BLAST of Lag0036671 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 292.7 bits (748), Expect = 3.1e-75
Identity = 131/261 (50.19%), Postives = 179/261 (68.58%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           + SWKK ALIK  IS  NP +VILQETK+  +D  I+KSLWS+  I WS++D  G + GI
Sbjct: 11  LDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSALDASGMASGI 70

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           +ILWN+      E++EG+FSL++   L+DGF FW++GIYGP++++   LFW +L+DL  L
Sbjct: 71  LILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLFWQELLDLSDL 130

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
           C  +WIL GDFNVTRW+WEKS+    T++M  FN FI+D+ L+D+PL+NG+ +WS    N
Sbjct: 131 CENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSR---N 190

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
            + +LID FL+T+G I K      +R+ R TSDHFPI L+ G+  WG  PF+  N WLSH
Sbjct: 191 TSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFRFENMWLSH 250

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
            TF   +E+WW N    GW G
Sbjct: 251 KTFKPFLETWWGNKPLHGWPG 268

[Close]

BLAST of Lag0036671 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-65
Identity = 122/261 (46.74%), Postives = 168/261 (64.37%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           +GS  KRA IK+ I+S  P +VIL ETK   I+ K IKSLWSS +IAW+S+D  GASGGI
Sbjct: 11  LGSASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGI 70

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           ++LW++      E++ G FS+S+   LAD FT+W+TG+Y P   K R+LFW +L DL  L
Sbjct: 71  ILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGL 130

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
           C P W+LG DFN+ RW+ E SS + P   M KFN FID   L+D  ++NG+++WS+ RP+
Sbjct: 131 CGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPH 190

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
             ++ I+RFL + G   KFS    +RL R  SDH+PI L    ++WG  PF+L N WL  
Sbjct: 191 IVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLENLWLQD 250

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
             F   +E+ W +  S G+ G
Sbjct: 251 KHFQQHIEAIWSSGSSDGYLG 271

[Close]

BLAST of Lag0036671 vs. NCBI nr
Match: RVW25035.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-56
Identity = 109/261 (41.76%), Postives = 152/261 (58.24%), Query Frame = 0


Query: 1    MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
            +GS KKR +++  +S+ NP +V+LQETK    DR+ + S+W+   + W ++   GASGGI
Sbjct: 1666 LGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWTGKRVEWVALPACGASGGI 1725

Query: 61   VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
            VILW+ S F   E V G FS++++ +  +  +FW+T +YGP +   R+ FW +L DL  L
Sbjct: 1726 VILWDSSKFECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGL 1785

Query: 121  CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
              P W +GGDFNV R   EK   S  T  MR F+ FI ++ LLD PL N  F+WS+ + +
Sbjct: 1786 TFPRWCVGGDFNVIRRISEKLGESRLTFNMRCFDEFIRESGLLDPPLRNAAFTWSNMQAD 1845

Query: 181  PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
            P    +DRFL +    + FS +    L R TSDH PICL     KWGP PF+  N WL H
Sbjct: 1846 PICKRLDRFLFSSEWDTFFSQSFQEALPRWTSDHSPICLETNPLKWGPTPFRFENMWLLH 1905

Query: 241  HTFLTTVESWWKNTLSQGWSG 262
              F      WW+    +GW G
Sbjct: 1906 PEFKEKFRVWWQECTGEGWEG 1926

[Close]

BLAST of Lag0036671 vs. NCBI nr
Match: RVX07754.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-56
Identity = 110/261 (42.15%), Postives = 151/261 (57.85%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           +GS KKR  ++  +S+ NP +V+LQETK    DR+++ S+W   ++ W ++   GASGGI
Sbjct: 132 LGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRLVSSIWKGKSLDWVALPACGASGGI 191

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           VILW+   F   E V G FS++++L+  +  +FW+T +YGPN +  R  FW +L DL  L
Sbjct: 192 VILWDSVKFNCSEKVLGSFSVTVKLNSDEEESFWLTSVYGPNKAVWREDFWLELQDLHGL 251

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
             P W +GGDFNV R   EK   S  T  MR+F+ FI ++ LLD PL N  F+WS+ + +
Sbjct: 252 TFPRWCVGGDFNVIRRISEKMGDSRLTVNMRRFDEFIRESGLLDPPLRNAAFTWSNMQVD 311

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
           P    +DRFL +    S FS      L R TSDH PICL      WGP PF+  N WL H
Sbjct: 312 PICKRLDRFLFSSEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENMWLLH 371

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
             F      WW+    +GW G
Sbjct: 372 PEFKEKFRDWWQECTVEGWEG 392

[Close]

BLAST of Lag0036671 vs. NCBI nr
Match: RVX15530.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-56
Identity = 108/261 (41.38%), Postives = 152/261 (58.24%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           +GS KKR +++  +S+ NP +V+LQETK    DR+ + S+W    + W+++   GASGGI
Sbjct: 402 LGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWKGKRVEWAALPACGASGGI 461

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           VILW+ S F   E V G FS++++ +  +  +FW+T +YGP +   R+ FW +L DL  L
Sbjct: 462 VILWDSSKFECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGL 521

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
             P W +GGDFNV R   EK   +  T  MR F+ FI ++ LLD PL N  F+WS+ + +
Sbjct: 522 TFPRWCVGGDFNVIRRISEKLGETRLTFNMRCFDEFIRESGLLDPPLRNAAFTWSNMQAD 581

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
           P    +DRFL +    + FS +    L R TSDH PICL     KWGP PF+  N WL H
Sbjct: 582 PICKRLDRFLFSSEWDTFFSQSFQEALPRWTSDHSPICLETNPLKWGPTPFRFENMWLIH 641

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
             F      WW+    +GW G
Sbjct: 642 PEFKEKFRVWWQECTGEGWEG 662

[Close]

BLAST of Lag0036671 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.5e-75
Identity = 131/261 (50.19%), Postives = 179/261 (68.58%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           + SWKK ALIK  IS  NP +VILQETK+  +D  I+KSLWS+  I WS++D  G + GI
Sbjct: 11  LDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSALDASGMASGI 70

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           +ILWN+      E++EG+FSL++   L+DGF FW++GIYGP++++   LFW +L+DL  L
Sbjct: 71  LILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLFWQELLDLSDL 130

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
           C  +WIL GDFNVTRW+WEKS+    T++M  FN FI+D+ L+D+PL+NG+ +WS    N
Sbjct: 131 CENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSR---N 190

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
            + +LID FL+T+G I K      +R+ R TSDHFPI L+ G+  WG  PF+  N WLSH
Sbjct: 191 TSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFRFENMWLSH 250

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
            TF   +E+WW N    GW G
Sbjct: 251 KTFKPFLETWWGNKPLHGWPG 268

[Close]

BLAST of Lag0036671 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 122/261 (46.74%), Postives = 168/261 (64.37%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           +GS  KRA IK+ I+S  P +VIL ETK   I+ K IKSLWSS +IAW+S+D  GASGGI
Sbjct: 11  LGSASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGI 70

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           ++LW++      E++ G FS+S+   LAD FT+W+TG+Y P   K R+LFW +L DL  L
Sbjct: 71  ILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGL 130

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
           C P W+LG DFN+ RW+ E SS + P   M KFN FID   L+D  ++NG+++WS+ RP+
Sbjct: 131 CGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPH 190

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
             ++ I+RFL + G   KFS    +RL R  SDH+PI L    ++WG  PF+L N WL  
Sbjct: 191 IVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLENLWLQD 250

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
             F   +E+ W +  S G+ G
Sbjct: 251 KHFQQHIEAIWSSGSSDGYLG 271

[Close]

BLAST of Lag0036671 vs. ExPASy TrEMBL
Match: A0A438CP96 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_30 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 5.4e-57
Identity = 109/261 (41.76%), Postives = 152/261 (58.24%), Query Frame = 0


Query: 1    MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
            +GS KKR +++  +S+ NP +V+LQETK    DR+ + S+W+   + W ++   GASGGI
Sbjct: 1666 LGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWTGKRVEWVALPACGASGGI 1725

Query: 61   VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
            VILW+ S F   E V G FS++++ +  +  +FW+T +YGP +   R+ FW +L DL  L
Sbjct: 1726 VILWDSSKFECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGL 1785

Query: 121  CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
              P W +GGDFNV R   EK   S  T  MR F+ FI ++ LLD PL N  F+WS+ + +
Sbjct: 1786 TFPRWCVGGDFNVIRRISEKLGESRLTFNMRCFDEFIRESGLLDPPLRNAAFTWSNMQAD 1845

Query: 181  PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
            P    +DRFL +    + FS +    L R TSDH PICL     KWGP PF+  N WL H
Sbjct: 1846 PICKRLDRFLFSSEWDTFFSQSFQEALPRWTSDHSPICLETNPLKWGPTPFRFENMWLLH 1905

Query: 241  HTFLTTVESWWKNTLSQGWSG 262
              F      WW+    +GW G
Sbjct: 1906 PEFKEKFRVWWQECTGEGWEG 1926

[Close]

BLAST of Lag0036671 vs. ExPASy TrEMBL
Match: A0A438JFM2 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_80 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 5.4e-57
Identity = 110/261 (42.15%), Postives = 151/261 (57.85%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           +GS KKR  ++  +S+ NP +V+LQETK    DR+++ S+W   ++ W ++   GASGGI
Sbjct: 132 LGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRLVSSIWKGKSLDWVALPACGASGGI 191

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           VILW+   F   E V G FS++++L+  +  +FW+T +YGPN +  R  FW +L DL  L
Sbjct: 192 VILWDSVKFNCSEKVLGSFSVTVKLNSDEEESFWLTSVYGPNKAVWREDFWLELQDLHGL 251

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
             P W +GGDFNV R   EK   S  T  MR+F+ FI ++ LLD PL N  F+WS+ + +
Sbjct: 252 TFPRWCVGGDFNVIRRISEKMGDSRLTVNMRRFDEFIRESGLLDPPLRNAAFTWSNMQVD 311

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
           P    +DRFL +    S FS      L R TSDH PICL      WGP PF+  N WL H
Sbjct: 312 PICKRLDRFLFSSEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENMWLLH 371

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
             F      WW+    +GW G
Sbjct: 372 PEFKEKFRDWWQECTVEGWEG 392

[Close]

BLAST of Lag0036671 vs. ExPASy TrEMBL
Match: A0A438K2W1 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_863 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 7.1e-57
Identity = 108/261 (41.38%), Postives = 152/261 (58.24%), Query Frame = 0


Query: 1   MGSWKKRALIKNLISSHNPALVILQETKMVGIDRKIIKSLWSSGNIAWSSIDVDGASGGI 60
           +GS KKR +++  +S+ NP +V+LQETK    DR+ + S+W    + W+++   GASGGI
Sbjct: 402 LGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWKGKRVEWAALPACGASGGI 461

Query: 61  VILWNESFFYVKEIVEGMFSLSLQLSLADGFTFWITGIYGPNSSKDRRLFWAKLMDLQAL 120
           VILW+ S F   E V G FS++++ +  +  +FW+T +YGP +   R+ FW +L DL  L
Sbjct: 462 VILWDSSKFECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFWLELQDLYGL 521

Query: 121 CLPNWILGGDFNVTRWTWEKSSYSAPTRAMRKFNRFIDDNELLDIPLSNGKFSWSSFRPN 180
             P W +GGDFNV R   EK   +  T  MR F+ FI ++ LLD PL N  F+WS+ + +
Sbjct: 522 TFPRWCVGGDFNVIRRISEKLGETRLTFNMRCFDEFIRESGLLDPPLRNAAFTWSNMQAD 581

Query: 181 PTMTLIDRFLITDGIISKFSTATTRRLERVTSDHFPICLNLGKEKWGPAPFKLNNAWLSH 240
           P    +DRFL +    + FS +    L R TSDH PICL     KWGP PF+  N WL H
Sbjct: 582 PICKRLDRFLFSSEWDTFFSQSFQEALPRWTSDHSPICLETNPLKWGPTPFRFENMWLIH 641

Query: 241 HTFLTTVESWWKNTLSQGWSG 262
             F      WW+    +GW G
Sbjct: 642 PEFKEKFRVWWQECTGEGWEG 662

The following BLAST results are available for this feature:

BLAST of Lag0036671 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158956.1	3.1e-75	50.19	uncharacterized protein LOC111025405 [Momordica charantia]	[more]
XP_022145142.1	2.9e-65	46.74	uncharacterized protein LOC111014657 [Momordica charantia]	[more]
RVW25035.1	1.1e-56	41.76	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVX07754.1	1.1e-56	42.15	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVX15530.1	1.5e-56	41.38	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of Lag0036671 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0036671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2G6	1.5e-75	50.19	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CVN2	1.4e-65	46.74	uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A438CP96	5.4e-57	41.76	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438JFM2	5.4e-57	42.15	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438K2W1	7.1e-57	41.38	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_863 P...	[more]

BLAST of Lag0036671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF14529	Exo_endo_phos_2	coord: 99..218 e-value: 2.7E-8 score: 33.7
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..221 e-value: 9.5E-34 score: 119.2
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 5..221
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 1..158
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036671.1	Lag0036671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003824	catalytic activity