Lag0036670 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036670
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 299023 .. 300567 (+)
RNA-Seq Expression	Lag0036670
Synteny	Lag0036670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAAGCGTGAATTCTATCCAAGATCAGAGGATGGTATAAAGTGGGGAAATACTTGGTTCGATTTCATCCTTGGAGCGTCGAAGCTATGCTTGGAGAACCTAAGGTTCCCTTTTAGGGAGGATGGATAAAGATCATAAATCTTCCGCGGGATAAATGGAACATTGATAATTTCAGGAAAATTGAATGGAAGAACTCCGTTCACTACCGAAAAATAAATCAAAAAGATTTATCGTATCCTTTTATTGTGTATCAAATTTATGGTTTCTATTGGTGCAAATCCAATCACCTCAATTTTCAATTTTAGATGAGAAGGAATTCCTCATTGGTAACAAATGCTTATCCATTAAGCAGAGGAAATCCTATTTAACAGAAAGATTATGGCCTTAGTGACATTTGTGGAGGATATATAGAGACCGCCAATAAGACCCTTGCTCGCATGGATATGATGGAAATCTGTATTAAAGTTAAGGAAAACAGTTATGGCTTCATCCCTGCAGAAGTTCATCTCCCATCTACTTCCTCCAGCCCCACGATTGTAAAAATCGATCCCTTCTATATGGAAGAATACAGTATTGGTTACATTGTCGGAGTTCATGGCAAAATCCCTTCCCAAAAGGCTGCTTGTGTAGAAGTTTTGGAAGATGAAGTTAGCCCACGCGCCGCCCCTGCGATGATGGAAACAAATGAGCATAATTCTCTTTGTTCGTACAAATGGGAACCCCTCGGAGCCCCAAATGATGAAATGTTATCTGTCACCGAATTGACCCCAGCTGTAAACACTGAGAGGGCCCCACTGATAACCAAGTCTCCCAAGAAATCCCAATCCCAAAAATCCCACCGCATCAGTCAAAGTGGGACCCATCCTCCCAAAGCCCCCAATAAACCCTCTCCTCATGACCCAATCCGTAGAAGCCCAAGCCCAACACCACAACCTACAAAACCTAACTGCTCTTCCCTAGAAAACCCTGCCACGAACTCTGATTACCAACCCAGCAGAAAAAAGCCTATCACCATTAATGATAAGGAAACTTTTCTTCTTACGGAGACAAAATTCTCTACACACACAGAGCTTCCCTTATTAGATTCGGAAGGTGGGGCCTCCTCTCCCTGTTCCACCTCTATCCAGCCGAAGGATCTCCCAGGTTGAATCGCCCCCGACAATCAGCAAGCTTTGTGAAGACAACCACGAATATCAGCTCCAAATAAAGAACACTCTCCCTCTCTGCATTGAAGAACCAGTGTACAACGGGTCTATTCTTCCCGATAACAAGGAAGACAAAGCTCTTATTGATATACAAGTAGAGGAAGAAGATACCGATGACTTAGAAACTGATCCAGCGGTTTATCTCCCTATTATTTTTCCTTGGCTAGCCGAGCATGGCATGTGCATCATGCCAATGCCAAGTAGGCATAAGCTATCCAATGCCACCAAGAAGAAAGTTAAATGGGTCAAAGAATTAGAGAATCTCCACACCAATGTGAATTATAATAAATCGACAGCTGAATGTCTAATGGACGGGTCGCCTACACCAACATGA

mRNA sequence

ATGAAGAACAAGCGTGAATTCTATCCAAGATCAGAGGATGGTATAAAGTGGGGAAATACTTGGTTCGATTTCATCCTTGGAGCGTCGAAGCTATGCTTGGAGAACCTAAGTGACATTTGTGGAGGATATATAGAGACCGCCAATAAGACCCTTGCTCGCATGGATATGATGGAAATCTGTATTAAAGTTAAGGAAAACAGTTATGGCTTCATCCCTGCAGAAGTTCATCTCCCATCTACTTCCTCCAGCCCCACGATTGTAAAAATCGATCCCTTCTATATGGAAGAATACAGTATTGGTTACATTGTCGGAGTTCATGGCAAAATCCCTTCCCAAAAGGCTGCTTGTGTAGAAGTTTTGGAAGATGAAGTTAGCCCACGCGCCGCCCCTGCGATGATGGAAACAAATGAGCATAATTCTCTTTGTTCGTACAAATGGGAACCCCTCGGAGCCCCAAATGATGAAATGTTATCTGTCACCGAATTGACCCCAGCTGTAAACACTGAGAGGGCCCCACTGATAACCAAGTCTCCCAAGAAATCCCAATCCCAAAAATCCCACCGCATCAGTCAAAGTGGGACCCATCCTCCCAAAGCCCCCAATAAACCCTCTCCTCATGACCCAATCCGTAGAAGCCCAAGCCCAACACCACAACCTACAAAACCTAACTGCTCTTCCCTAGAAAACCCTGCCACGAACTCTGATTACCAACCCAGCAGAAAAAAGCCTATCACCATTAATGATAAGGAAACTTTTCTTCTTACGGAGACAAAATTCTCTACACACACAGAGCTTCCCTTATTAGATTCGGAAGGTGGGGCCTCCTCTCCCTGTTCCACCTCTATCCAGCCGAAGGATCTCCCAGAACCAGTGTACAACGGGTCTATTCTTCCCGATAACAAGGAAGACAAAGCTCTTATTGATATACAAGTAGAGGAAGAAGATACCGATGACTTAGAAACTGATCCAGCGGTTTATCTCCCTATTATTTTTCCTTGGCTAGCCGAGCATGGCATGTGCATCATGCCAATGCCAAGTAGGCATAAGCTATCCAATGCCACCAAGAAGAAAGTTAAATGGGTCAAAGAATTAGAGAATCTCCACACCAATGTGAATTATAATAAATCGACAGCTGAATGTCTAATGGACGGGTCGCCTACACCAACATGA

Coding sequence (CDS)

ATGAAGAACAAGCGTGAATTCTATCCAAGATCAGAGGATGGTATAAAGTGGGGAAATACTTGGTTCGATTTCATCCTTGGAGCGTCGAAGCTATGCTTGGAGAACCTAAGTGACATTTGTGGAGGATATATAGAGACCGCCAATAAGACCCTTGCTCGCATGGATATGATGGAAATCTGTATTAAAGTTAAGGAAAACAGTTATGGCTTCATCCCTGCAGAAGTTCATCTCCCATCTACTTCCTCCAGCCCCACGATTGTAAAAATCGATCCCTTCTATATGGAAGAATACAGTATTGGTTACATTGTCGGAGTTCATGGCAAAATCCCTTCCCAAAAGGCTGCTTGTGTAGAAGTTTTGGAAGATGAAGTTAGCCCACGCGCCGCCCCTGCGATGATGGAAACAAATGAGCATAATTCTCTTTGTTCGTACAAATGGGAACCCCTCGGAGCCCCAAATGATGAAATGTTATCTGTCACCGAATTGACCCCAGCTGTAAACACTGAGAGGGCCCCACTGATAACCAAGTCTCCCAAGAAATCCCAATCCCAAAAATCCCACCGCATCAGTCAAAGTGGGACCCATCCTCCCAAAGCCCCCAATAAACCCTCTCCTCATGACCCAATCCGTAGAAGCCCAAGCCCAACACCACAACCTACAAAACCTAACTGCTCTTCCCTAGAAAACCCTGCCACGAACTCTGATTACCAACCCAGCAGAAAAAAGCCTATCACCATTAATGATAAGGAAACTTTTCTTCTTACGGAGACAAAATTCTCTACACACACAGAGCTTCCCTTATTAGATTCGGAAGGTGGGGCCTCCTCTCCCTGTTCCACCTCTATCCAGCCGAAGGATCTCCCAGAACCAGTGTACAACGGGTCTATTCTTCCCGATAACAAGGAAGACAAAGCTCTTATTGATATACAAGTAGAGGAAGAAGATACCGATGACTTAGAAACTGATCCAGCGGTTTATCTCCCTATTATTTTTCCTTGGCTAGCCGAGCATGGCATGTGCATCATGCCAATGCCAAGTAGGCATAAGCTATCCAATGCCACCAAGAAGAAAGTTAAATGGGTCAAAGAATTAGAGAATCTCCACACCAATGTGAATTATAATAAATCGACAGCTGAATGTCTAATGGACGGGTCGCCTACACCAACATGA

Protein sequence

MKNKREFYPRSEDGIKWGNTWFDFILGASKLCLENLSDICGGYIETANKTLARMDMMEICIKVKENSYGFIPAEVHLPSTSSSPTIVKIDPFYMEEYSIGYIVGVHGKIPSQKAACVEVLEDEVSPRAAPAMMETNEHNSLCSYKWEPLGAPNDEMLSVTELTPAVNTERAPLITKSPKKSQSQKSHRISQSGTHPPKAPNKPSPHDPIRRSPSPTPQPTKPNCSSLENPATNSDYQPSRKKPITINDKETFLLTETKFSTHTELPLLDSEGGASSPCSTSIQPKDLPEPVYNGSILPDNKEDKALIDIQVEEEDTDDLETDPAVYLPIIFPWLAEHGMCIMPMPSRHKLSNATKKKVKWVKELENLHTNVNYNKSTAECLMDGSPTPT

Homology

[Close]

BLAST of Lag0036670 vs. NCBI nr
Match: QWT43305.1 (kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-12
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 36  LSDICGGYIETANKTLARMDMMEICIKVKENSYGFIPAEVHLPSTSSSPTIVKIDPFYME 95
           + ++CGGYIET+ KTLARMDMME  +KVK N  GF+PA + L STS+    V++DPF+  
Sbjct: 265 IGELCGGYIETSKKTLARMDMMEASLKVKMNKNGFLPAIIQLLSTSAFSMAVQMDPFFDL 324

Query: 96  EYSIGYIVGVHG 108
           +  IGYI  V G
Sbjct: 325 DLHIGYIAAVMG 336

The following BLAST results are available for this feature:

BLAST of Lag0036670 vs. NCBI nr


Match Name	E-value	Identity	Description
QWT43305.1	7.2e-12	54.17	kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris]	[more]

BLAST of Lag0036670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0036670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0036670 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036670.1	Lag0036670.1	mRNA